Wall clock time and date at job start Sat Apr 11 2020 06:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00212 * 2 1 4 4 H 1.48497 * 109.47813 * 240.00107 * 3 2 1 5 5 H 1.48507 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46993 * 120.00096 * 3 2 1 7 7 C 1.38813 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00219 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47182 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46764 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47047 * 179.97438 * 12 11 10 14 14 C 1.46501 * 119.99559 * 278.61753 * 13 12 11 15 15 C 1.50699 * 109.46963 * 264.03950 * 14 13 12 16 16 C 1.38241 * 119.99974 * 264.27962 * 15 14 13 17 17 C 1.38239 * 119.99688 * 179.76551 * 16 15 14 18 18 C 1.38235 * 119.99795 * 0.51530 * 17 16 15 19 19 C 1.38228 * 120.00359 * 359.73753 * 18 17 16 20 20 C 1.38235 * 120.00159 * 0.02562 * 19 18 17 21 21 C 1.34774 * 120.00287 * 98.61214 * 13 12 11 22 22 O 1.21551 * 119.99954 * 186.29955 * 21 13 12 23 23 C 1.47838 * 119.99792 * 6.30843 * 21 13 12 24 24 C 1.39948 * 120.93615 * 150.29628 * 23 21 13 25 25 N 1.32145 * 118.91702 * 179.72614 * 24 23 21 26 26 C 1.31864 * 120.97592 * 0.25482 * 25 24 23 27 27 N 1.31876 * 122.08916 * 0.02562 * 26 25 24 28 28 C 1.32142 * 120.97000 * 359.97091 * 27 26 25 29 29 H 0.96999 * 119.99636 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00163 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47338 * 59.99609 * 10 9 7 32 32 H 1.09007 * 109.46848 * 299.99571 * 10 9 7 33 33 H 1.08995 * 109.47026 * 59.99574 * 11 10 9 34 34 H 1.08998 * 109.46750 * 299.99764 * 11 10 9 35 35 H 1.09002 * 109.47401 * 59.99714 * 12 11 10 36 36 H 1.08998 * 109.47440 * 299.99520 * 12 11 10 37 37 H 1.08999 * 109.47546 * 24.04638 * 14 13 12 38 38 H 1.09005 * 109.46887 * 144.04488 * 14 13 12 39 39 H 1.07997 * 120.00283 * 0.02562 * 16 15 14 40 40 H 1.07995 * 119.99609 * 180.22860 * 17 16 15 41 41 H 1.07998 * 119.99896 * 179.72707 * 18 17 16 42 42 H 1.07999 * 120.00341 * 179.97438 * 19 18 17 43 43 H 1.07995 * 120.00632 * 179.97438 * 20 19 18 44 44 H 1.07997 * 120.53971 * 0.02562 * 24 23 21 45 45 H 1.07997 * 118.95707 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.54002 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 6 1.8287 -6.1447 -0.0018 13 7 0.8766 -7.2583 -0.0018 14 6 0.2566 -7.6918 1.2527 15 6 1.0314 -8.8527 1.8210 16 6 0.6191 -10.1481 1.5700 17 6 1.3326 -11.2130 2.0874 18 6 2.4524 -10.9824 2.8645 19 6 2.8617 -9.6870 3.1198 20 6 2.1510 -8.6221 2.5985 21 6 0.5712 -7.8838 -1.1559 22 8 -0.3016 -8.7295 -1.1762 23 6 1.2977 -7.5413 -2.3970 24 6 1.4864 -8.4925 -3.4060 25 7 2.1371 -8.1416 -4.5014 26 6 2.6090 -6.9191 -4.6482 27 7 2.4584 -5.9939 -3.7206 28 6 1.8207 -6.2581 -2.5939 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.6847 -3.7146 0.8894 32 1 2.6846 -3.7146 -0.8906 33 1 0.4373 -4.7617 -0.8913 34 1 0.4367 -4.7621 0.8886 35 1 2.4553 -6.2029 0.8881 36 1 2.4553 -6.2021 -0.8918 37 1 0.2630 -6.8670 1.9653 38 1 -0.7716 -7.9996 1.0625 39 1 -0.2581 -10.3281 0.9663 40 1 1.0126 -12.2251 1.8882 41 1 3.0073 -11.8143 3.2723 42 1 3.7363 -9.5069 3.7273 43 1 2.4705 -7.6100 2.7982 44 1 1.1023 -9.4955 -3.2934 45 1 3.1361 -6.6677 -5.5567 46 1 1.7011 -5.4951 -1.8390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571337076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:33 Heat of formation + Delta-G solvation = 63.953873 kcal Electronic energy + Delta-G solvation = -28899.951091 eV Core-core repulsion = 24983.530657 eV Total energy + Delta-G solvation = -3916.420434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.59796 -40.96045 -39.73650 -38.12296 -36.47121 -35.00071 -34.33646 -33.62880 -32.34761 -31.76895 -31.20478 -27.90337 -27.22077 -25.76627 -25.60098 -24.56524 -23.41784 -22.59381 -22.53994 -20.83522 -19.37869 -19.13416 -18.77632 -18.27555 -17.78653 -17.02801 -16.65831 -16.60784 -16.34028 -16.02050 -15.90274 -15.60132 -15.33056 -15.20409 -14.76339 -14.71047 -14.51537 -14.28154 -14.06580 -13.60934 -13.46907 -13.22677 -12.91650 -12.84727 -12.81065 -12.73123 -12.36675 -12.24924 -12.12738 -12.04235 -11.85290 -11.78034 -11.73477 -11.19911 -10.90541 -10.76176 -10.42372 -9.92615 -9.80524 -9.69001 -8.97537 -7.92798 -5.21339 -0.67836 -0.15563 0.34200 0.51687 1.49954 1.52568 1.53608 1.58423 1.79396 2.58003 2.60161 2.92400 3.01499 3.02342 3.20248 3.30881 3.41757 3.69619 3.71414 3.79671 3.89997 3.94158 4.16284 4.21968 4.25279 4.30951 4.31978 4.45510 4.47010 4.54701 4.57205 4.61412 4.72300 4.77918 4.85115 5.10104 5.12642 5.17569 5.20718 5.32533 5.35293 5.53321 5.57706 5.63191 5.65519 5.70317 6.11597 6.11993 6.29517 6.84374 6.86802 7.36243 8.12299 8.33295 9.30579 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009356 B = 0.003137 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.037404 B = 8924.862157 C =11028.128275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.139 4.139 12 C 0.090 3.910 13 N -0.588 5.588 14 C 0.154 3.846 15 C -0.117 4.117 16 C -0.111 4.111 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.111 4.111 21 C 0.573 3.427 22 O -0.552 6.552 23 C -0.250 4.250 24 C 0.204 3.796 25 N -0.530 5.530 26 C 0.311 3.689 27 N -0.536 5.536 28 C 0.154 3.846 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.036 0.964 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.190 0.810 45 H 0.234 0.766 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -23.868 1.704 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.390 5.390 10 C 0.025 3.975 11 C -0.178 4.178 12 C -0.033 4.033 13 N -0.318 5.318 14 C 0.032 3.968 15 C -0.118 4.118 16 C -0.130 4.130 17 C -0.151 4.151 18 C -0.140 4.140 19 C -0.148 4.148 20 C -0.130 4.130 21 C 0.360 3.640 22 O -0.431 6.431 23 C -0.258 4.258 24 C 0.037 3.963 25 N -0.243 5.243 26 C 0.025 3.975 27 N -0.250 5.250 28 C -0.011 4.011 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.153 0.847 44 H 0.207 0.793 45 H 0.250 0.750 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.608 -23.968 0.849 24.877 hybrid contribution -0.746 0.978 0.632 1.383 sum 5.862 -22.990 1.482 23.772 Atomic orbital electron populations 1.69804 1.06628 1.26072 1.59619 1.25543 0.96331 1.01094 1.03828 0.85253 0.77220 0.79302 0.78260 1.20452 1.22470 1.20198 1.19606 0.91609 0.85266 1.40996 0.90334 1.42546 1.05645 1.01256 1.89522 1.20766 0.93798 0.84244 0.98741 1.22099 0.99117 0.93466 1.03131 1.22351 0.91255 0.83611 1.06050 1.47821 1.44452 1.32883 1.06608 1.20495 0.96173 0.95815 0.84287 1.20220 0.97520 0.94749 0.99287 1.21263 1.00086 0.92667 0.98975 1.21408 0.96057 0.99442 0.98221 1.21495 0.96679 0.97773 0.98006 1.21458 1.00478 0.92659 1.00217 1.21314 0.94483 1.00268 0.96900 1.17933 0.82059 0.80952 0.83046 1.90752 1.32045 1.34361 1.85932 1.21735 1.06498 0.98444 0.99094 1.23659 0.87158 0.99882 0.85567 1.68639 1.11783 1.20752 1.23167 1.26002 0.90251 0.83502 0.97707 1.68693 1.17071 1.36636 1.02557 1.24940 0.86681 0.95375 0.94078 0.94105 0.79509 0.94644 0.95582 0.92261 0.90114 0.87185 0.88261 0.87171 0.89788 0.86583 0.84748 0.84075 0.84090 0.84657 0.79299 0.75032 0.78305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.62 13.06 21.65 0.28 -58.33 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.24 -13.09 9.99 84.03 0.84 -12.25 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.75 -35.84 5.60 -343.44 -1.92 -37.76 16 10 C 0.15 5.20 6.18 86.38 0.53 5.74 16 11 C -0.14 -3.66 4.68 30.60 0.14 -3.51 16 12 C 0.09 1.79 4.84 86.38 0.42 2.21 16 13 N -0.59 -12.57 2.48 -829.57 -2.06 -14.62 16 14 C 0.15 3.02 5.54 85.63 0.47 3.49 16 15 C -0.12 -2.27 5.41 -19.86 -0.11 -2.38 16 16 C -0.11 -2.27 9.68 22.27 0.22 -2.05 16 17 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 18 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 19 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 20 C -0.11 -1.89 9.72 22.27 0.22 -1.67 16 21 C 0.57 14.40 7.44 86.78 0.65 15.05 16 22 O -0.55 -16.26 16.24 -3.88 -0.06 -16.32 16 23 C -0.25 -5.98 5.61 -19.91 -0.11 -6.09 16 24 C 0.20 4.51 10.90 85.06 0.93 5.44 16 25 N -0.53 -11.63 10.42 -198.98 -2.07 -13.71 16 26 C 0.31 6.48 12.27 180.84 2.22 8.69 16 27 N -0.54 -13.63 10.42 -199.01 -2.07 -15.70 16 28 C 0.15 3.85 8.80 85.06 0.75 4.60 16 29 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.37 19.28 7.67 -92.70 -0.71 18.57 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.03 0.90 7.82 -2.38 -0.02 0.88 16 33 H 0.06 1.71 7.11 -2.39 -0.02 1.69 16 34 H 0.08 2.12 8.03 -2.39 -0.02 2.10 16 35 H 0.11 1.75 8.03 -2.39 -0.02 1.73 16 36 H 0.10 2.01 4.00 -2.40 -0.01 2.00 16 37 H 0.11 1.81 7.89 -2.39 -0.02 1.79 16 38 H 0.08 1.82 7.43 -2.38 -0.02 1.81 16 39 H 0.12 2.55 7.86 -2.91 -0.02 2.53 16 40 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.88 7.95 -2.91 -0.02 1.85 16 44 H 0.19 3.53 7.99 -2.91 -0.02 3.51 16 45 H 0.23 3.01 8.06 -2.91 -0.02 2.98 16 46 H 0.20 5.02 2.33 -2.91 -0.01 5.02 16 Total: -1.00 -70.42 386.41 2.72 -67.70 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.31 Total: 33.44 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 8.30 Total: 8.01 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -7.85 Total: -140.12 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.06 Total: -16.32 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.42 2.72 -67.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571337076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.653 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds