Wall clock time and date at job start Sat Apr 11 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00165 * 2 1 4 4 H 1.48500 * 109.47376 * 270.00374 * 3 2 1 5 5 H 1.48503 * 109.46923 * 30.00496 * 3 2 1 6 6 H 1.48498 * 109.47389 * 150.00018 * 3 2 1 7 7 C 1.37876 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99933 * 185.18653 * 7 2 1 9 9 C 1.50696 * 120.00515 * 5.19011 * 7 2 1 10 10 H 1.09000 * 109.46885 * 24.87920 * 9 7 2 11 11 C 1.50695 * 109.47566 * 144.87819 * 9 7 2 12 12 O 1.21281 * 120.00011 * 119.99883 * 11 9 7 13 13 N 1.34778 * 120.00021 * 300.00572 * 11 9 7 14 14 C 1.46505 * 119.99615 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.46682 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47177 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47349 * 180.02562 * 16 15 14 18 18 C 1.38407 * 119.99875 * 179.97438 * 17 16 15 19 19 N 1.32487 * 119.21936 * 359.73600 * 18 17 16 20 20 C 1.32270 * 120.74217 * 179.71435 * 19 18 17 21 21 C 1.38610 * 119.19453 * 0.54551 * 20 19 18 22 22 C 1.38601 * 118.55898 * 359.72581 * 21 20 19 23 23 N 1.32275 * 119.19496 * 0.02562 * 22 21 20 24 24 C 1.50698 * 109.46984 * 264.88148 * 9 7 2 25 25 C 1.38228 * 120.00402 * 306.01070 * 24 9 7 26 26 C 1.38234 * 120.00537 * 179.79227 * 25 24 9 27 27 C 1.38236 * 119.99621 * 0.43453 * 26 25 24 28 28 C 1.38238 * 120.00011 * 359.81804 * 27 26 25 29 29 C 1.38226 * 119.99855 * 359.97231 * 28 27 26 30 30 H 0.97006 * 119.99952 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00366 * 359.97438 * 13 11 9 32 32 H 1.09003 * 109.46941 * 60.00138 * 14 13 11 33 33 H 1.09000 * 109.47497 * 299.99747 * 14 13 11 34 34 H 1.09000 * 109.47333 * 300.00319 * 15 14 13 35 35 H 1.09003 * 109.46935 * 60.00605 * 15 14 13 36 36 H 1.09000 * 109.47262 * 300.00378 * 16 15 14 37 37 H 1.09003 * 109.46682 * 60.00466 * 16 15 14 38 38 H 0.97004 * 119.99960 * 0.02562 * 17 16 15 39 39 H 1.08000 * 120.40389 * 180.29807 * 20 19 18 40 40 H 1.08000 * 120.72098 * 179.74949 * 21 20 19 41 41 H 1.08000 * 120.39969 * 180.02562 * 22 21 20 42 42 H 1.08007 * 119.99608 * 359.97438 * 25 24 9 43 43 H 1.08000 * 120.00551 * 180.27428 * 26 25 24 44 44 H 1.08002 * 119.99976 * 179.83839 * 27 26 25 45 45 H 1.08006 * 119.99651 * 180.02562 * 28 27 26 46 46 H 1.08003 * 119.99925 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0812 -1.1961 0.0840 9 6 1.2556 -2.4964 -0.1192 10 1 0.3032 -2.3236 -0.6203 11 6 2.0744 -3.4755 -0.9204 12 8 2.4201 -4.5264 -0.4234 13 7 2.4224 -3.1833 -2.1892 14 6 3.2189 -4.1350 -2.9679 15 6 3.4730 -3.5644 -4.3646 16 6 4.3053 -4.5580 -5.1778 17 7 4.5492 -4.0114 -6.5149 18 6 5.2859 -4.7367 -7.4352 19 7 5.7676 -5.9213 -7.0886 20 6 6.4708 -6.6424 -7.9460 21 6 6.7106 -6.1395 -9.2152 22 6 6.1967 -4.8947 -9.5428 23 7 5.4974 -4.2274 -8.6399 24 6 1.0047 -3.0587 1.2563 25 6 2.0594 -3.2435 2.1304 26 6 1.8288 -3.7552 3.3937 27 6 0.5444 -4.0905 3.7796 28 6 -0.5097 -3.9106 2.9036 29 6 -0.2795 -3.3948 1.6420 30 1 -0.4850 0.8401 0.0004 31 1 2.1457 -2.3430 -2.5868 32 1 2.6775 -5.0772 -3.0537 33 1 4.1713 -4.3075 -2.4667 34 1 2.5204 -3.3922 -4.8657 35 1 4.0142 -2.6221 -4.2792 36 1 5.2579 -4.7298 -4.6766 37 1 3.7645 -5.5005 -5.2632 38 1 4.1950 -3.1409 -6.7551 39 1 6.8569 -7.6094 -7.6593 40 1 7.2852 -6.7056 -9.9335 41 1 6.3652 -4.4747 -10.5234 42 1 3.0635 -2.9854 1.8275 43 1 2.6522 -3.8955 4.0783 44 1 0.3645 -4.4928 4.7656 45 1 -1.5132 -4.1722 3.2053 46 1 -1.1030 -3.2546 0.9574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583694880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:50 Heat of formation + Delta-G solvation = 15.955006 kcal Electronic energy + Delta-G solvation = -27532.903620 eV Core-core repulsion = 23614.401798 eV Total energy + Delta-G solvation = -3918.501821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.76987 -40.83999 -39.37762 -37.83263 -35.83087 -35.50277 -34.54974 -33.08957 -32.74981 -31.52640 -30.81716 -29.09796 -26.70350 -25.64890 -25.21795 -23.75553 -23.20284 -22.73949 -22.31473 -20.88255 -19.08614 -18.64009 -18.36608 -17.67482 -17.54748 -16.94515 -16.83859 -16.50384 -16.28062 -16.05842 -15.78352 -15.60762 -15.35195 -15.17545 -15.04799 -14.45954 -14.20872 -14.12038 -13.92104 -13.86284 -13.40804 -13.30067 -12.98226 -12.81802 -12.75298 -12.60510 -12.24539 -12.18908 -11.93985 -11.84370 -11.79572 -11.66004 -11.28160 -11.26271 -10.67986 -10.44019 -10.04637 -9.88298 -9.54919 -9.24766 -9.05369 -8.20612 -6.32454 0.29750 0.31358 0.76665 0.81451 1.42797 1.45681 1.54238 1.85359 1.96569 2.43234 2.58216 3.00790 3.08568 3.27618 3.35337 3.75364 3.93505 3.97193 4.00419 4.05524 4.23335 4.30861 4.41501 4.43316 4.50217 4.53268 4.55374 4.55845 4.60195 4.79664 4.88563 4.95418 4.98385 5.09229 5.12353 5.12999 5.38058 5.44541 5.45869 5.65321 5.68839 5.79349 5.83578 5.85143 5.95968 6.18211 6.24594 6.41644 6.51313 6.71679 6.80747 7.34844 7.39748 7.56032 8.87332 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.002144 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.475110 B =13056.034997 C =14611.785768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.034 3.966 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.053 3.947 10 H 0.067 0.933 11 C 0.525 3.475 12 O -0.594 6.594 13 N -0.719 5.719 14 C 0.128 3.872 15 C -0.127 4.127 16 C 0.154 3.846 17 N -0.698 5.698 18 C 0.541 3.459 19 N -0.595 5.595 20 C 0.176 3.824 21 C -0.284 4.284 22 C 0.178 3.822 23 N -0.598 5.598 24 C -0.038 4.038 25 C -0.111 4.111 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.130 4.130 29 C -0.142 4.142 30 H 0.267 0.733 31 H 0.411 0.589 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.418 0.582 39 H 0.194 0.806 40 H 0.178 0.822 41 H 0.197 0.803 42 H 0.094 0.906 43 H 0.135 0.865 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 -9.028 -14.922 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.169 4.169 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.031 3.969 10 H 0.085 0.915 11 C 0.314 3.686 12 O -0.475 6.475 13 N -0.370 5.370 14 C 0.003 3.997 15 C -0.165 4.165 16 C 0.029 3.971 17 N -0.336 5.336 18 C 0.184 3.816 19 N -0.319 5.319 20 C 0.010 3.990 21 C -0.309 4.309 22 C 0.012 3.988 23 N -0.321 5.321 24 C -0.039 4.039 25 C -0.130 4.130 26 C -0.154 4.154 27 C -0.162 4.162 28 C -0.147 4.147 29 C -0.160 4.160 30 H 0.076 0.924 31 H 0.246 0.754 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.256 0.744 39 H 0.210 0.790 40 H 0.195 0.805 41 H 0.213 0.787 42 H 0.112 0.888 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.157 0.843 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.547 -9.197 -13.730 18.605 hybrid contribution 0.467 1.308 -0.794 1.600 sum 9.014 -7.889 -14.524 18.826 Atomic orbital electron populations 1.70024 1.07123 1.27969 1.49056 1.25607 0.95517 1.02083 0.93645 0.85594 0.78408 0.79146 0.78761 1.18899 1.21372 1.20000 1.20735 0.92697 0.89242 1.52607 0.92921 1.18003 0.96896 0.92348 0.89617 0.91534 1.21412 0.79050 0.86241 0.81947 1.90553 1.57849 1.27712 1.71424 1.45805 1.55268 1.22749 1.13215 1.21099 0.95237 0.92442 0.90887 1.21807 1.01717 0.99546 0.93441 1.20987 0.99453 0.96260 0.80408 1.44121 1.56110 1.21557 1.11784 1.19582 0.88591 0.86828 0.86593 1.67977 1.17644 1.07600 1.38716 1.23580 0.87990 0.98388 0.89059 1.22902 1.08201 0.99721 1.00124 1.23576 0.86684 0.90669 0.97916 1.67933 1.22822 1.38659 1.02710 1.20146 0.93278 0.93249 0.97261 1.20845 0.98094 0.99596 0.94437 1.21324 0.98115 1.00052 0.95867 1.21269 0.92339 1.02100 1.00458 1.21303 0.99982 0.99955 0.93508 1.21135 0.96262 1.00884 0.97744 0.92383 0.75358 0.92191 0.92628 0.89349 0.89674 0.91906 0.91680 0.74408 0.78971 0.80459 0.78655 0.88762 0.84702 0.83547 0.84257 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.30 12.84 21.45 0.28 -48.03 16 2 C 0.03 1.70 5.45 84.65 0.46 2.16 16 3 Si 0.96 40.64 29.54 68.60 2.03 42.66 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.52 -26.14 7.47 25.60 0.19 -25.95 16 8 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 9 C 0.05 2.58 2.38 -13.04 -0.03 2.55 16 10 H 0.07 3.49 7.13 -2.39 -0.02 3.47 16 11 C 0.52 23.81 7.04 87.66 0.62 24.42 16 12 O -0.59 -29.70 15.42 -3.03 -0.05 -29.74 16 13 N -0.72 -25.90 5.46 -463.05 -2.53 -28.42 16 14 C 0.13 3.68 5.67 86.38 0.49 4.17 16 15 C -0.13 -2.63 5.44 30.60 0.17 -2.46 16 16 C 0.15 3.21 5.65 86.38 0.49 3.69 16 17 N -0.70 -14.84 5.70 -351.04 -2.00 -16.84 16 18 C 0.54 12.81 8.42 261.49 2.20 15.01 16 19 N -0.60 -13.49 9.59 -197.99 -1.90 -15.39 16 20 C 0.18 2.68 11.30 84.72 0.96 3.64 16 21 C -0.28 -3.23 10.16 22.45 0.23 -3.00 16 22 C 0.18 2.57 11.30 84.71 0.96 3.53 16 23 N -0.60 -13.02 10.46 -197.99 -2.07 -15.09 16 24 C -0.04 -1.86 4.30 -19.87 -0.09 -1.95 16 25 C -0.11 -5.16 8.30 22.27 0.18 -4.97 16 26 C -0.14 -5.24 10.05 22.27 0.22 -5.01 16 27 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16 28 C -0.13 -4.85 10.05 22.27 0.22 -4.62 16 29 C -0.14 -6.35 9.67 22.27 0.22 -6.14 16 30 H 0.27 13.60 8.31 -92.70 -0.77 12.82 16 31 H 0.41 13.85 8.36 -92.71 -0.77 13.08 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.42 7.83 8.59 -92.71 -0.80 7.04 16 39 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.09 4.52 7.90 -2.91 -0.02 4.50 16 43 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 44 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 45 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 46 H 0.11 4.70 7.96 -2.91 -0.02 4.68 16 Total: -1.00 -70.39 396.28 0.91 -69.48 By element: Atomic # 1 Polarization: 41.68 SS G_CDS: -0.56 Total: 41.11 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 7.72 Total: 0.26 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -8.22 Total: -123.78 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.74 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -70.39 0.91 -69.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583694880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.436 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds