Wall clock time and date at job start Sat Apr 11 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47153 * 269.99821 * 3 2 1 5 5 H 1.48497 * 109.46894 * 30.00011 * 3 2 1 6 6 H 1.48497 * 109.47139 * 149.99984 * 3 2 1 7 7 C 1.38813 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99349 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00459 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00162 * 184.99515 * 9 7 2 11 11 H 1.09002 * 109.46745 * 329.81263 * 10 9 7 12 12 C 1.52999 * 109.47141 * 209.81373 * 10 9 7 13 13 N 1.46497 * 109.47408 * 54.90128 * 12 10 9 14 14 C 1.34777 * 120.00110 * 185.01957 * 13 12 10 15 15 O 1.21632 * 119.99772 * 5.00757 * 14 13 12 16 16 C 1.47079 * 119.99878 * 185.01525 * 14 13 12 17 17 C 1.38067 * 126.49655 * 354.13999 * 16 14 13 18 18 C 1.39254 * 107.69686 * 180.28101 * 17 16 14 19 19 N 1.31015 * 108.82444 * 359.58966 * 18 17 16 20 20 N 1.36949 * 126.49489 * 174.18956 * 16 14 13 21 21 C 1.40023 * 126.16463 * 359.93881 * 20 16 14 22 22 C 1.38880 * 120.07270 * 315.25949 * 21 20 16 23 23 C 1.38106 * 119.93067 * 179.74902 * 22 21 20 24 24 C 1.38291 * 120.06893 * 0.54893 * 23 22 21 25 25 C 1.38291 * 120.14246 * 359.70354 * 24 23 22 26 26 C 1.38113 * 120.06790 * 0.02562 * 25 24 23 27 27 C 1.52994 * 109.47053 * 89.81229 * 10 9 7 28 28 C 1.53006 * 117.49932 * 8.74522 * 27 10 9 29 29 C 1.53002 * 117.49711 * 300.08777 * 27 10 9 30 30 H 0.96999 * 120.00155 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99902 * 5.00200 * 9 7 2 32 32 H 1.08999 * 109.46775 * 294.89799 * 12 10 9 33 33 H 1.08997 * 109.47066 * 174.89977 * 12 10 9 34 34 H 0.96999 * 119.99763 * 5.01476 * 13 12 10 35 35 H 1.08000 * 126.15337 * 0.02562 * 17 16 14 36 36 H 1.08004 * 125.58738 * 179.76122 * 18 17 16 37 37 H 1.08004 * 120.03655 * 0.02562 * 22 21 20 38 38 H 1.07999 * 119.96721 * 180.27566 * 23 22 21 39 39 H 1.08000 * 119.92958 * 179.72313 * 24 23 22 40 40 H 1.07992 * 119.96478 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.03342 * 180.02562 * 26 25 24 42 42 H 1.08995 * 115.55599 * 154.41823 * 27 10 9 43 43 H 1.09000 * 117.49919 * 0.02562 * 28 27 10 44 44 H 1.08999 * 117.49483 * 145.02108 * 28 27 10 45 45 H 1.09007 * 117.50155 * 214.97832 * 29 27 10 46 46 H 1.08995 * 117.50200 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4660 -0.1121 11 1 3.5246 -3.2670 0.3367 12 6 5.4513 -2.3452 0.6179 13 7 5.2172 -1.9232 2.0011 14 6 6.2615 -1.6523 2.8089 15 8 7.3939 -1.6695 2.3654 16 6 6.0317 -1.3361 4.2268 17 6 4.8075 -1.1687 4.8429 18 6 5.0448 -0.8752 6.1833 19 7 6.3381 -0.8692 6.3922 20 7 6.9915 -1.1510 5.1860 21 6 8.3764 -1.2297 4.9951 22 6 8.9188 -2.2729 4.2560 23 6 10.2848 -2.3448 4.0652 24 6 11.1132 -1.3857 4.6187 25 6 10.5767 -0.3486 5.3596 26 6 9.2110 -0.2680 5.5494 27 6 4.3625 -2.7824 -1.5879 28 6 4.0230 -1.6963 -2.6107 29 6 3.1396 -2.9409 -2.4937 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3653 0.0722 32 1 6.0748 -1.6071 0.1134 33 1 5.9561 -3.3112 0.6133 34 1 4.3106 -1.8387 2.3355 35 1 3.8399 -1.2469 4.3695 36 1 4.2867 -0.6865 6.9292 37 1 8.2728 -3.0246 3.8271 38 1 10.7068 -3.1533 3.4868 39 1 12.1814 -1.4467 4.4718 40 1 11.2262 0.3990 5.7903 41 1 8.7926 0.5425 6.1278 42 1 5.2261 -3.4147 -1.7933 43 1 3.6217 -0.7562 -2.2322 44 1 4.6632 -1.6144 -3.4891 45 1 3.1989 -3.6773 -3.2952 46 1 2.1568 -2.8202 -2.0381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661141555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:08 Heat of formation + Delta-G solvation = 124.174784 kcal Electronic energy + Delta-G solvation = -29179.742596 eV Core-core repulsion = 25265.933536 eV Total energy + Delta-G solvation = -3913.809060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.67043 -39.27686 -39.03264 -37.75373 -34.83836 -33.59988 -33.30733 -31.55570 -31.20348 -30.50832 -29.09366 -28.46215 -24.56462 -23.50081 -23.07719 -22.85373 -22.04770 -21.50759 -20.78612 -20.03010 -19.31413 -18.59411 -17.60238 -16.72282 -16.26875 -15.90205 -15.71234 -15.28522 -15.08047 -14.79068 -14.68116 -14.35326 -14.10419 -13.89851 -13.73540 -13.58696 -13.28149 -13.17249 -12.89899 -12.67015 -12.52789 -11.83713 -11.64328 -11.37123 -11.31754 -11.03467 -11.03168 -10.84298 -10.65844 -10.28134 -10.25142 -10.02928 -9.66581 -9.62266 -9.29890 -9.27711 -9.11275 -9.04926 -8.87164 -8.38383 -7.44558 -5.89433 -3.27068 0.59107 1.21800 1.43301 2.06308 2.43257 3.20521 3.26488 3.29075 3.33296 3.39681 3.55876 4.44350 4.47428 4.48084 4.57097 4.73693 4.76701 4.92509 5.06716 5.12799 5.19350 5.21586 5.34065 5.37188 5.42824 5.48919 5.60081 5.67315 5.70365 5.76209 5.80248 5.86596 5.87907 6.13505 6.15557 6.17734 6.30195 6.30789 6.41535 6.44531 6.51696 6.52705 6.64627 6.93714 6.97362 7.05018 7.35713 7.60749 7.86131 8.16846 8.28771 9.06268 9.78518 9.97360 11.28017 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.003299 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.161128 B = 8486.338250 C = 9668.656976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.876 3.124 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.093 0.907 9 N -0.742 5.742 10 C 0.197 3.803 11 H 0.070 0.930 12 C 0.116 3.884 13 N -0.694 5.694 14 C 0.575 3.425 15 O -0.535 6.535 16 C 0.037 3.963 17 C -0.210 4.210 18 C 0.046 3.954 19 N -0.271 5.271 20 N -0.296 5.296 21 C 0.142 3.858 22 C -0.070 4.070 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.104 4.104 27 C -0.178 4.178 28 C -0.167 4.167 29 C -0.167 4.167 30 H 0.261 0.739 31 H 0.364 0.636 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.414 0.586 35 H 0.166 0.834 36 H 0.195 0.805 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.738 -5.052 8.696 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.183 4.183 3 Si 0.707 3.293 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.386 5.386 10 C 0.087 3.913 11 H 0.088 0.912 12 C -0.008 4.008 13 N -0.345 5.345 14 C 0.359 3.641 15 O -0.413 6.413 16 C -0.091 4.091 17 C -0.240 4.240 18 C -0.137 4.137 19 N -0.092 5.092 20 N -0.075 5.075 21 C 0.051 3.949 22 C -0.090 4.090 23 C -0.128 4.128 24 C -0.133 4.133 25 C -0.135 4.135 26 C -0.124 4.124 27 C -0.200 4.200 28 C -0.204 4.204 29 C -0.204 4.204 30 H 0.071 0.929 31 H 0.197 0.803 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.251 0.749 35 H 0.184 0.816 36 H 0.212 0.788 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.245 -4.985 9.201 21.033 hybrid contribution -0.716 1.339 -0.571 1.622 sum 17.529 -3.646 8.630 19.876 Atomic orbital electron populations 1.69679 1.05093 1.25953 1.56689 1.24634 0.95069 0.96953 1.01618 0.86697 0.79211 0.85425 0.77979 1.21007 1.21776 1.20408 1.18991 0.80195 0.94579 1.43934 0.88958 1.42869 1.04173 1.02601 1.88923 1.19974 0.89863 0.90418 0.91052 0.91183 1.21770 0.98968 0.99958 0.80138 1.45719 1.09415 1.66883 1.12521 1.16994 0.85466 0.78009 0.83632 1.90843 1.21976 1.52530 1.75947 1.21283 0.89413 1.06650 0.91704 1.22156 0.97541 1.09689 0.94566 1.23905 0.93403 0.99483 0.96947 1.77490 1.07486 1.21820 1.02429 1.45965 1.03749 1.52349 1.05414 1.17364 0.78452 0.96991 1.02067 1.21029 0.95613 0.96198 0.96143 1.20967 0.92400 0.99622 0.99800 1.21245 1.00053 0.94601 0.97358 1.20970 0.94020 0.98883 0.99623 1.20997 0.93487 0.97670 1.00207 1.23001 0.99119 1.03386 0.94460 1.22841 1.02964 0.95527 0.99082 1.22862 0.96818 0.99571 1.01161 0.92927 0.80266 0.91094 0.91218 0.74876 0.81611 0.78783 0.85336 0.85225 0.85583 0.85303 0.85361 0.89272 0.87471 0.90958 0.90746 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.01 13.97 55.49 0.78 -26.23 16 2 C 0.01 0.37 5.50 -17.43 -0.10 0.28 16 3 Si 0.88 20.81 27.79 -169.99 -4.72 16.08 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.30 6.45 56.52 0.36 -5.93 16 7 C -0.25 -6.02 8.88 -15.06 -0.13 -6.16 16 8 H 0.09 2.44 7.78 -52.48 -0.41 2.03 16 9 N -0.74 -14.90 2.73 -53.43 -0.15 -15.04 16 10 C 0.20 3.23 2.84 -67.93 -0.19 3.04 16 11 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 12 C 0.12 1.70 5.27 -4.04 -0.02 1.68 16 13 N -0.69 -10.26 5.34 -61.50 -0.33 -10.59 16 14 C 0.58 9.07 7.42 -12.67 -0.09 8.97 16 15 O -0.54 -9.33 13.03 5.25 0.07 -9.26 16 16 C 0.04 0.56 6.78 -82.06 -0.56 0.00 16 17 C -0.21 -2.73 10.32 -39.27 -0.41 -3.13 16 18 C 0.05 0.56 11.96 -17.52 -0.21 0.35 16 19 N -0.27 -3.89 12.41 30.53 0.38 -3.52 16 20 N -0.30 -4.50 3.73 -7.08 -0.03 -4.53 16 21 C 0.14 2.05 5.90 -83.64 -0.49 1.56 16 22 C -0.07 -0.94 7.38 -39.39 -0.29 -1.23 16 23 C -0.11 -1.20 10.04 -39.61 -0.40 -1.60 16 24 C -0.11 -1.10 10.04 -39.54 -0.40 -1.50 16 25 C -0.12 -1.18 10.04 -39.61 -0.40 -1.58 16 26 C -0.10 -1.31 9.88 -39.39 -0.39 -1.70 16 27 C -0.18 -2.79 5.71 -90.62 -0.52 -3.31 16 28 C -0.17 -2.87 9.81 -26.69 -0.26 -3.13 16 29 C -0.17 -2.82 9.93 -26.69 -0.26 -3.09 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.36 7.61 5.69 -40.82 -0.23 7.38 16 32 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.41 6.04 7.17 -40.82 -0.29 5.75 16 35 H 0.17 1.89 7.47 -52.49 -0.39 1.50 16 36 H 0.20 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.13 1.81 6.72 -52.48 -0.35 1.46 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 42 H 0.09 1.22 8.11 -51.93 -0.42 0.79 16 43 H 0.11 2.17 6.84 -51.93 -0.36 1.81 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 46 H 0.11 2.16 6.79 -51.93 -0.35 1.81 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -30.65 383.10 -9.55 -40.20 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -6.20 Total: 17.68 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -5.12 Total: -10.56 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.65 Total: -59.91 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.72 Total: 16.08 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.65 -9.55 -40.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661141555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.373 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds