Wall clock time and date at job start Sat Apr 11 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47153 * 269.99821 * 3 2 1 5 5 H 1.48497 * 109.46894 * 30.00011 * 3 2 1 6 6 H 1.48497 * 109.47139 * 149.99984 * 3 2 1 7 7 C 1.38813 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99349 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00459 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00162 * 184.99515 * 9 7 2 11 11 H 1.09002 * 109.46745 * 329.81263 * 10 9 7 12 12 C 1.52999 * 109.47141 * 209.81373 * 10 9 7 13 13 N 1.46497 * 109.47408 * 54.90128 * 12 10 9 14 14 C 1.34777 * 120.00110 * 185.01957 * 13 12 10 15 15 O 1.21632 * 119.99772 * 5.00757 * 14 13 12 16 16 C 1.47079 * 119.99878 * 185.01525 * 14 13 12 17 17 C 1.38067 * 126.49655 * 354.13999 * 16 14 13 18 18 C 1.39254 * 107.69686 * 180.28101 * 17 16 14 19 19 N 1.31015 * 108.82444 * 359.58966 * 18 17 16 20 20 N 1.36949 * 126.49489 * 174.18956 * 16 14 13 21 21 C 1.40023 * 126.16463 * 359.93881 * 20 16 14 22 22 C 1.38880 * 120.07270 * 315.25949 * 21 20 16 23 23 C 1.38106 * 119.93067 * 179.74902 * 22 21 20 24 24 C 1.38291 * 120.06893 * 0.54893 * 23 22 21 25 25 C 1.38291 * 120.14246 * 359.70354 * 24 23 22 26 26 C 1.38113 * 120.06790 * 0.02562 * 25 24 23 27 27 C 1.52994 * 109.47053 * 89.81229 * 10 9 7 28 28 C 1.53006 * 117.49932 * 8.74522 * 27 10 9 29 29 C 1.53002 * 117.49711 * 300.08777 * 27 10 9 30 30 H 0.96999 * 120.00155 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99902 * 5.00200 * 9 7 2 32 32 H 1.08999 * 109.46775 * 294.89799 * 12 10 9 33 33 H 1.08997 * 109.47066 * 174.89977 * 12 10 9 34 34 H 0.96999 * 119.99763 * 5.01476 * 13 12 10 35 35 H 1.08000 * 126.15337 * 0.02562 * 17 16 14 36 36 H 1.08004 * 125.58738 * 179.76122 * 18 17 16 37 37 H 1.08004 * 120.03655 * 0.02562 * 22 21 20 38 38 H 1.07999 * 119.96721 * 180.27566 * 23 22 21 39 39 H 1.08000 * 119.92958 * 179.72313 * 24 23 22 40 40 H 1.07992 * 119.96478 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.03342 * 180.02562 * 26 25 24 42 42 H 1.08995 * 115.55599 * 154.41823 * 27 10 9 43 43 H 1.09000 * 117.49919 * 0.02562 * 28 27 10 44 44 H 1.08999 * 117.49483 * 145.02108 * 28 27 10 45 45 H 1.09007 * 117.50155 * 214.97832 * 29 27 10 46 46 H 1.08995 * 117.50200 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4660 -0.1121 11 1 3.5246 -3.2670 0.3367 12 6 5.4513 -2.3452 0.6179 13 7 5.2172 -1.9232 2.0011 14 6 6.2615 -1.6523 2.8089 15 8 7.3939 -1.6695 2.3654 16 6 6.0317 -1.3361 4.2268 17 6 4.8075 -1.1687 4.8429 18 6 5.0448 -0.8752 6.1833 19 7 6.3381 -0.8692 6.3922 20 7 6.9915 -1.1510 5.1860 21 6 8.3764 -1.2297 4.9951 22 6 8.9188 -2.2729 4.2560 23 6 10.2848 -2.3448 4.0652 24 6 11.1132 -1.3857 4.6187 25 6 10.5767 -0.3486 5.3596 26 6 9.2110 -0.2680 5.5494 27 6 4.3625 -2.7824 -1.5879 28 6 4.0230 -1.6963 -2.6107 29 6 3.1396 -2.9409 -2.4937 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3653 0.0722 32 1 6.0748 -1.6071 0.1134 33 1 5.9561 -3.3112 0.6133 34 1 4.3106 -1.8387 2.3355 35 1 3.8399 -1.2469 4.3695 36 1 4.2867 -0.6865 6.9292 37 1 8.2728 -3.0246 3.8271 38 1 10.7068 -3.1533 3.4868 39 1 12.1814 -1.4467 4.4718 40 1 11.2262 0.3990 5.7903 41 1 8.7926 0.5425 6.1278 42 1 5.2261 -3.4147 -1.7933 43 1 3.6217 -0.7562 -2.2322 44 1 4.6632 -1.6144 -3.4891 45 1 3.1989 -3.6773 -3.2952 46 1 2.1568 -2.8202 -2.0381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661141555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:07 Heat of formation + Delta-G solvation = 106.337494 kcal Electronic energy + Delta-G solvation = -29180.516079 eV Core-core repulsion = 25265.933536 eV Total energy + Delta-G solvation = -3914.582543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.69875 -40.50218 -39.90300 -39.15751 -36.09783 -35.18956 -34.41464 -33.14457 -32.18908 -31.72418 -30.07892 -29.82225 -25.87885 -24.89086 -24.23402 -23.94435 -23.26586 -22.81048 -21.75620 -21.24143 -20.61565 -19.89997 -19.25701 -17.73357 -17.31694 -17.06552 -16.81094 -16.65098 -16.40470 -16.13128 -15.86862 -15.57959 -15.18013 -15.11006 -14.76511 -14.74027 -14.55745 -14.45943 -14.22997 -14.20032 -13.58688 -13.13972 -12.95383 -12.70831 -12.60022 -12.45461 -12.25546 -12.13236 -12.05538 -12.02691 -11.66241 -11.38950 -11.10296 -11.06531 -10.88381 -10.64623 -10.36952 -10.05070 -9.93060 -9.32604 -9.31560 -7.96506 -5.28686 -0.40826 0.34826 0.47017 1.05728 1.37817 1.40436 1.44467 1.45783 2.05710 2.12259 2.49838 2.69759 3.08501 3.36428 3.42051 3.58853 3.64571 3.85814 3.89099 3.91363 4.10379 4.17936 4.24892 4.31540 4.40243 4.41084 4.46505 4.52650 4.53973 4.57867 4.65727 4.78004 4.84704 4.97862 4.98440 5.14997 5.17422 5.25584 5.33333 5.35750 5.46923 5.50512 5.52644 5.60787 5.67295 5.88414 6.03337 6.26229 6.28744 6.47143 6.96878 7.12798 7.87206 8.05138 9.24662 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.003299 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.161128 B = 8486.338250 C = 9668.656976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.049 4.049 3 Si 0.933 3.067 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.260 1.260 7 C -0.203 4.203 8 H 0.068 0.932 9 N -0.741 5.741 10 C 0.196 3.804 11 H 0.070 0.930 12 C 0.126 3.874 13 N -0.692 5.692 14 C 0.577 3.423 15 O -0.554 6.554 16 C 0.012 3.988 17 C -0.207 4.207 18 C 0.052 3.948 19 N -0.292 5.292 20 N -0.305 5.305 21 C 0.110 3.890 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.121 4.121 27 C -0.162 4.162 28 C -0.176 4.176 29 C -0.173 4.173 30 H 0.254 0.746 31 H 0.363 0.637 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.180 0.820 36 H 0.233 0.767 37 H 0.113 0.887 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.774 -5.580 8.867 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.240 4.240 3 Si 0.764 3.236 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.185 1.185 7 C -0.334 4.334 8 H 0.086 0.914 9 N -0.383 5.383 10 C 0.087 3.913 11 H 0.088 0.912 12 C 0.002 3.998 13 N -0.343 5.343 14 C 0.361 3.639 15 O -0.433 6.433 16 C -0.115 4.115 17 C -0.237 4.237 18 C -0.131 4.131 19 N -0.114 5.114 20 N -0.083 5.083 21 C 0.020 3.980 22 C -0.109 4.109 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.130 4.130 26 C -0.140 4.140 27 C -0.183 4.183 28 C -0.213 4.213 29 C -0.210 4.210 30 H 0.063 0.937 31 H 0.196 0.804 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.252 0.748 35 H 0.197 0.803 36 H 0.249 0.751 37 H 0.131 0.869 38 H 0.169 0.831 39 H 0.180 0.820 40 H 0.177 0.823 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.344 -5.546 9.372 23.962 hybrid contribution -1.592 1.381 -0.614 2.195 sum 19.752 -4.165 8.758 22.004 Atomic orbital electron populations 1.69826 1.06804 1.26086 1.60285 1.25172 0.95532 0.99849 1.03494 0.85753 0.78582 0.81844 0.77455 1.21604 1.23137 1.18494 1.18885 0.81883 0.93091 1.39585 0.91406 1.42823 1.02647 1.04130 1.88748 1.20145 0.90450 0.88510 0.92173 0.91191 1.21688 0.97459 1.00999 0.79676 1.45683 1.09284 1.66797 1.12514 1.17083 0.85198 0.77594 0.84005 1.90822 1.22657 1.53441 1.76390 1.21377 0.90364 1.08162 0.91618 1.22425 0.97454 1.08792 0.95011 1.24540 0.93341 0.97920 0.97344 1.77452 1.08561 1.22583 1.02767 1.46128 1.04181 1.52589 1.05447 1.17742 0.78536 0.98195 1.03532 1.21056 0.96698 0.96116 0.97046 1.21318 0.91549 1.00583 0.99692 1.21676 1.01704 0.93380 0.95793 1.21378 0.93273 0.99509 0.98864 1.21169 0.94637 0.97528 1.00715 1.23007 0.99502 1.02737 0.93008 1.22801 1.03667 0.94204 1.00615 1.22786 0.95400 1.00391 1.02392 0.93686 0.80381 0.91685 0.88879 0.74805 0.80276 0.75120 0.86891 0.83101 0.81988 0.82275 0.85693 0.85744 0.90786 0.88475 0.88056 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -58.93 13.97 21.65 0.30 -58.63 16 2 C -0.05 -2.63 5.50 84.86 0.47 -2.16 16 3 Si 0.93 43.71 27.79 68.60 1.91 45.61 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 6 H -0.26 -11.19 6.45 99.48 0.64 -10.55 16 7 C -0.20 -10.02 8.88 84.03 0.75 -9.27 16 8 H 0.07 3.68 7.78 -2.91 -0.02 3.66 16 9 N -0.74 -29.17 2.73 -322.94 -0.88 -30.05 16 10 C 0.20 6.07 2.84 44.99 0.13 6.20 16 11 H 0.07 2.23 8.04 -2.39 -0.02 2.21 16 12 C 0.13 3.41 5.27 86.38 0.46 3.86 16 13 N -0.69 -19.64 5.34 -466.73 -2.49 -22.14 16 14 C 0.58 17.89 7.42 86.56 0.64 18.53 16 15 O -0.55 -19.07 13.03 -4.13 -0.05 -19.13 16 16 C 0.01 0.36 6.78 40.62 0.28 0.64 16 17 C -0.21 -5.21 10.32 22.47 0.23 -4.98 16 18 C 0.05 1.19 11.96 85.06 1.02 2.21 16 19 N -0.29 -8.31 12.41 -57.33 -0.71 -9.02 16 20 N -0.30 -9.32 3.73 -176.32 -0.66 -9.98 16 21 C 0.11 3.20 5.90 38.14 0.23 3.42 16 22 C -0.09 -2.39 7.38 22.39 0.17 -2.22 16 23 C -0.11 -2.29 10.04 22.25 0.22 -2.07 16 24 C -0.11 -1.76 10.04 22.29 0.22 -1.54 16 25 C -0.11 -2.02 10.04 22.25 0.22 -1.80 16 26 C -0.12 -2.98 9.88 22.39 0.22 -2.76 16 27 C -0.16 -4.64 5.71 -10.79 -0.06 -4.70 16 28 C -0.18 -5.73 9.81 30.62 0.30 -5.43 16 29 C -0.17 -5.58 9.93 30.62 0.30 -5.28 16 30 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.36 14.73 5.69 -92.71 -0.53 14.21 16 32 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.41 11.68 7.17 -92.71 -0.66 11.02 16 35 H 0.18 3.88 7.47 -2.91 -0.02 3.85 16 36 H 0.23 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.11 3.27 6.72 -2.91 -0.02 3.25 16 38 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.12 2.81 8.11 -2.39 -0.02 2.80 16 43 H 0.07 2.94 6.84 -2.39 -0.02 2.93 16 44 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 46 H 0.07 2.87 6.79 -2.39 -0.02 2.86 16 Total: -1.00 -69.25 383.10 2.96 -66.29 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -0.24 Total: 44.37 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.79 Total: -7.33 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -4.44 Total: -129.81 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.91 Total: 45.61 kcal Total: -69.25 2.96 -66.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661141555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.631 kcal (2) G-P(sol) polarization free energy of solvation -69.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds