Wall clock time and date at job start Sat Apr 11 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48500 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47040 * 300.00100 * 3 2 1 6 6 H 1.48489 * 109.47124 * 60.00132 * 3 2 1 7 7 C 1.38814 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99809 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00112 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46722 * 35.00494 * 10 9 7 12 12 C 1.53000 * 109.46974 * 154.99976 * 10 9 7 13 13 N 1.46500 * 109.47461 * 305.00015 * 12 10 9 14 14 C 1.34774 * 119.99802 * 179.97438 * 13 12 10 15 15 O 1.21684 * 120.00175 * 4.53444 * 14 13 12 16 16 C 1.46702 * 119.99764 * 184.53738 * 14 13 12 17 17 C 1.36711 * 126.85473 * 2.69588 * 16 14 13 18 18 N 1.33316 * 107.83918 * 180.02562 * 17 16 14 19 19 C 1.30872 * 109.74024 * 359.97438 * 18 17 16 20 20 N 1.34734 * 109.13605 * 0.02562 * 19 18 17 21 21 C 1.40112 * 126.50543 * 179.73756 * 20 19 18 22 22 C 1.38853 * 120.07229 * 123.34493 * 21 20 19 23 23 C 1.38112 * 119.93420 * 179.69844 * 22 21 20 24 24 C 1.38284 * 120.06664 * 0.57530 * 23 22 21 25 25 C 1.38280 * 120.13678 * 359.72387 * 24 23 22 26 26 C 1.38121 * 120.06917 * 359.97438 * 25 24 23 27 27 C 1.52997 * 109.47166 * 275.00516 * 10 9 7 28 28 C 1.52998 * 117.49897 * 128.74759 * 27 10 9 29 29 C 1.52996 * 117.50076 * 60.08551 * 27 10 9 30 30 H 0.96993 * 120.00677 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00132 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46794 * 184.99862 * 12 10 9 33 33 H 1.09002 * 109.47182 * 65.00774 * 12 10 9 34 34 H 0.96998 * 119.99854 * 0.02562 * 13 12 10 35 35 H 1.07999 * 126.08373 * 0.02676 * 17 16 14 36 36 H 1.08003 * 125.43684 * 180.02562 * 19 18 17 37 37 H 1.08005 * 120.03048 * 359.97438 * 22 21 20 38 38 H 1.07993 * 119.96911 * 180.29574 * 23 22 21 39 39 H 1.08000 * 119.93473 * 179.74352 * 24 23 22 40 40 H 1.08005 * 119.96970 * 180.02562 * 25 24 23 41 41 H 1.07995 * 120.03906 * 180.02562 * 26 25 24 42 42 H 1.09006 * 115.54787 * 274.41226 * 27 10 9 43 43 H 1.08999 * 117.50227 * 359.97438 * 28 27 10 44 44 H 1.08998 * 117.50109 * 145.02392 * 28 27 10 45 45 H 1.09005 * 117.49918 * 214.98385 * 29 27 10 46 46 H 1.09005 * 117.49801 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 1 2.9689 -3.5504 0.5890 12 6 1.1811 -4.7521 0.6091 13 7 0.7344 -4.3355 1.9407 14 6 -0.0554 -5.1473 2.6711 15 8 -0.3301 -6.2595 2.2607 16 6 -0.5840 -4.6902 3.9609 17 6 -0.4089 -3.4591 4.5290 18 7 -1.0495 -3.4539 5.6982 19 6 -1.6186 -4.6158 5.8955 20 7 -1.3590 -5.4188 4.8453 21 6 -1.7878 -6.7427 4.6823 22 6 -2.5260 -7.1021 3.5625 23 6 -2.9419 -8.4093 3.4017 24 6 -2.6340 -9.3572 4.3602 25 6 -1.9043 -9.0011 5.4795 26 6 -1.4802 -7.6969 5.6431 27 6 2.4223 -4.0355 -1.4375 28 6 3.8825 -4.3890 -1.7266 29 6 3.3032 -3.0620 -2.2231 30 1 -0.4851 0.8399 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 1.7561 -5.6746 0.6908 33 1 0.3136 -4.9201 -0.0291 34 1 1.0066 -3.4751 2.2963 35 1 0.1491 -2.6369 4.1059 36 1 -2.2031 -4.8876 6.7621 37 1 -2.7709 -6.3611 2.8159 38 1 -3.5120 -8.6905 2.5286 39 1 -2.9638 -10.3779 4.2343 40 1 -1.6650 -9.7438 6.2263 41 1 -0.9100 -7.4194 6.5172 42 1 1.6544 -4.5774 -1.9897 43 1 4.5840 -4.3514 -0.8932 44 1 4.0754 -5.1631 -2.4693 45 1 3.1151 -2.9637 -3.2923 46 1 3.6230 -2.1515 -1.7164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690156862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:43 Heat of formation + Delta-G solvation = 99.674640 kcal Electronic energy + Delta-G solvation = -28948.659329 eV Core-core repulsion = 25033.787863 eV Total energy + Delta-G solvation = -3914.871466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.45987 -39.20008 -39.08971 -37.50682 -34.82144 -34.13429 -33.38083 -31.33158 -31.18854 -30.03548 -29.41750 -27.81969 -24.29017 -23.56708 -23.10633 -22.88422 -21.84001 -21.68435 -20.97419 -20.07934 -19.53227 -18.65095 -17.30387 -16.69515 -16.21117 -16.07071 -15.66101 -15.21697 -14.96758 -14.89633 -14.43918 -14.32200 -14.03169 -13.90183 -13.74161 -13.61263 -13.39289 -13.18204 -12.99891 -12.86827 -12.12923 -11.90664 -11.49486 -11.40319 -11.19536 -10.88990 -10.88247 -10.74264 -10.62904 -10.17690 -10.10324 -9.95767 -9.76705 -9.54082 -9.33128 -9.18779 -9.00721 -8.92556 -8.77221 -8.50562 -7.07158 -5.83072 -3.13095 0.74419 1.12836 1.48247 2.40323 2.85446 3.39453 3.45445 3.46123 3.48155 3.49084 3.55281 4.38962 4.49161 4.58100 4.60174 4.65096 4.75445 4.86010 5.08934 5.12803 5.18521 5.19389 5.40968 5.44771 5.48940 5.51385 5.58664 5.70625 5.71217 5.82929 5.87478 5.97802 6.02751 6.07016 6.14352 6.22142 6.23235 6.35591 6.45923 6.51592 6.56171 6.60206 6.73889 6.82574 6.95100 7.13321 7.64482 7.75793 7.89096 8.33219 8.43595 9.45939 9.98946 10.35107 11.38526 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.003078 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.973250 B = 9093.170666 C =10675.021146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.056 0.944 12 C 0.123 3.877 13 N -0.697 5.697 14 C 0.587 3.413 15 O -0.550 6.550 16 C -0.077 4.077 17 C 0.049 3.951 18 N -0.490 5.490 19 C 0.209 3.791 20 N -0.386 5.386 21 C 0.112 3.888 22 C -0.064 4.064 23 C -0.108 4.108 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.110 4.110 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.155 4.155 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.412 0.588 35 H 0.187 0.813 36 H 0.212 0.788 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -17.246 9.291 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.001 4.001 13 N -0.348 5.348 14 C 0.373 3.627 15 O -0.429 6.429 16 C -0.191 4.191 17 C -0.104 4.104 18 N -0.207 5.207 19 C -0.072 4.072 20 N -0.065 5.065 21 C 0.022 3.978 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.192 4.192 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.250 0.750 35 H 0.204 0.796 36 H 0.228 0.772 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.238 -17.312 9.509 20.015 hybrid contribution 0.287 0.826 -0.624 1.074 sum -2.952 -16.486 8.885 18.959 Atomic orbital electron populations 1.69659 1.05038 1.25652 1.57093 1.24716 0.95419 0.97559 1.02721 0.86208 0.78824 0.84438 0.77226 1.20586 1.21969 1.21823 1.19181 0.90842 0.83763 1.43187 0.91069 1.42462 1.05816 0.99393 1.88104 1.20057 0.94345 0.86072 0.91299 0.92583 1.21632 0.98709 0.97757 0.82007 1.45628 1.49732 1.21699 1.17787 1.16718 0.78970 0.84693 0.82352 1.90807 1.60269 1.19794 1.72067 1.20999 1.06978 0.94537 0.96601 1.22878 1.00244 0.95481 0.91758 1.70205 1.12903 1.19867 1.17725 1.25268 1.02389 0.86391 0.93107 1.42673 1.37407 1.09916 1.16502 1.17627 1.00298 0.81967 0.97891 1.21063 0.94389 0.97371 0.95480 1.21047 1.00153 0.92243 0.99254 1.21272 0.97871 0.99666 0.93967 1.20969 0.98690 0.95275 0.98403 1.21046 1.00223 0.92688 0.99006 1.23015 0.92174 1.03137 0.99755 1.22965 0.97257 0.99835 1.03366 1.22784 1.03308 0.94063 0.99091 0.93481 0.78038 0.91404 0.91646 0.75044 0.79583 0.77191 0.85420 0.85188 0.85513 0.85228 0.85428 0.89160 0.89525 0.90103 0.90224 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -5.93 8.63 -15.06 -0.13 -6.06 16 8 H 0.07 1.74 6.91 -52.49 -0.36 1.38 16 9 N -0.72 -15.87 4.54 -53.42 -0.24 -16.11 16 10 C 0.19 3.45 2.70 -67.93 -0.18 3.27 16 11 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 12 C 0.12 2.02 5.22 -4.04 -0.02 2.00 16 13 N -0.70 -11.46 5.37 -61.61 -0.33 -11.79 16 14 C 0.59 9.98 7.77 -12.84 -0.10 9.88 16 15 O -0.55 -10.24 13.96 5.20 0.07 -10.17 16 16 C -0.08 -1.22 6.79 -82.07 -0.56 -1.77 16 17 C 0.05 0.76 11.36 -17.46 -0.20 0.56 16 18 N -0.49 -7.44 11.20 -14.36 -0.16 -7.60 16 19 C 0.21 2.62 12.31 -90.34 -1.11 1.51 16 20 N -0.39 -5.36 2.85 -58.63 -0.17 -5.52 16 21 C 0.11 1.43 5.34 -83.62 -0.45 0.99 16 22 C -0.06 -0.82 7.79 -39.40 -0.31 -1.13 16 23 C -0.11 -1.12 10.04 -39.61 -0.40 -1.52 16 24 C -0.11 -0.95 10.04 -39.55 -0.40 -1.35 16 25 C -0.11 -0.99 10.04 -39.61 -0.40 -1.38 16 26 C -0.11 -1.13 9.79 -39.40 -0.39 -1.52 16 27 C -0.16 -2.69 5.36 -90.62 -0.49 -3.17 16 28 C -0.20 -2.91 10.18 -26.69 -0.27 -3.18 16 29 C -0.16 -2.69 9.78 -26.70 -0.26 -2.95 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.39 9.39 7.80 -40.82 -0.32 9.07 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.41 6.85 7.09 -40.82 -0.29 6.56 16 35 H 0.19 2.75 7.47 -52.49 -0.39 2.35 16 36 H 0.21 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.13 1.83 7.79 -52.48 -0.41 1.42 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 43 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.11 2.05 6.23 -51.93 -0.32 1.72 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -30.76 388.94 -11.30 -42.06 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -6.28 Total: 18.69 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -5.75 Total: -6.11 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -0.18 Total: -66.64 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.76 -11.30 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690156862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.733 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds