Wall clock time and date at job start Sat Apr 11 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48500 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47040 * 300.00100 * 3 2 1 6 6 H 1.48489 * 109.47124 * 60.00132 * 3 2 1 7 7 C 1.38814 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99809 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00112 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46722 * 35.00494 * 10 9 7 12 12 C 1.53000 * 109.46974 * 154.99976 * 10 9 7 13 13 N 1.46500 * 109.47461 * 305.00015 * 12 10 9 14 14 C 1.34774 * 119.99802 * 179.97438 * 13 12 10 15 15 O 1.21684 * 120.00175 * 4.53444 * 14 13 12 16 16 C 1.46702 * 119.99764 * 184.53738 * 14 13 12 17 17 C 1.36711 * 126.85473 * 2.69588 * 16 14 13 18 18 N 1.33316 * 107.83918 * 180.02562 * 17 16 14 19 19 C 1.30872 * 109.74024 * 359.97438 * 18 17 16 20 20 N 1.34734 * 109.13605 * 0.02562 * 19 18 17 21 21 C 1.40112 * 126.50543 * 179.73756 * 20 19 18 22 22 C 1.38853 * 120.07229 * 123.34493 * 21 20 19 23 23 C 1.38112 * 119.93420 * 179.69844 * 22 21 20 24 24 C 1.38284 * 120.06664 * 0.57530 * 23 22 21 25 25 C 1.38280 * 120.13678 * 359.72387 * 24 23 22 26 26 C 1.38121 * 120.06917 * 359.97438 * 25 24 23 27 27 C 1.52997 * 109.47166 * 275.00516 * 10 9 7 28 28 C 1.52998 * 117.49897 * 128.74759 * 27 10 9 29 29 C 1.52996 * 117.50076 * 60.08551 * 27 10 9 30 30 H 0.96993 * 120.00677 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00132 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46794 * 184.99862 * 12 10 9 33 33 H 1.09002 * 109.47182 * 65.00774 * 12 10 9 34 34 H 0.96998 * 119.99854 * 0.02562 * 13 12 10 35 35 H 1.07999 * 126.08373 * 0.02676 * 17 16 14 36 36 H 1.08003 * 125.43684 * 180.02562 * 19 18 17 37 37 H 1.08005 * 120.03048 * 359.97438 * 22 21 20 38 38 H 1.07993 * 119.96911 * 180.29574 * 23 22 21 39 39 H 1.08000 * 119.93473 * 179.74352 * 24 23 22 40 40 H 1.08005 * 119.96970 * 180.02562 * 25 24 23 41 41 H 1.07995 * 120.03906 * 180.02562 * 26 25 24 42 42 H 1.09006 * 115.54787 * 274.41226 * 27 10 9 43 43 H 1.08999 * 117.50227 * 359.97438 * 28 27 10 44 44 H 1.08998 * 117.50109 * 145.02392 * 28 27 10 45 45 H 1.09005 * 117.49918 * 214.98385 * 29 27 10 46 46 H 1.09005 * 117.49801 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 1 2.9689 -3.5504 0.5890 12 6 1.1811 -4.7521 0.6091 13 7 0.7344 -4.3355 1.9407 14 6 -0.0554 -5.1473 2.6711 15 8 -0.3301 -6.2595 2.2607 16 6 -0.5840 -4.6902 3.9609 17 6 -0.4089 -3.4591 4.5290 18 7 -1.0495 -3.4539 5.6982 19 6 -1.6186 -4.6158 5.8955 20 7 -1.3590 -5.4188 4.8453 21 6 -1.7878 -6.7427 4.6823 22 6 -2.5260 -7.1021 3.5625 23 6 -2.9419 -8.4093 3.4017 24 6 -2.6340 -9.3572 4.3602 25 6 -1.9043 -9.0011 5.4795 26 6 -1.4802 -7.6969 5.6431 27 6 2.4223 -4.0355 -1.4375 28 6 3.8825 -4.3890 -1.7266 29 6 3.3032 -3.0620 -2.2231 30 1 -0.4851 0.8399 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 1.7561 -5.6746 0.6908 33 1 0.3136 -4.9201 -0.0291 34 1 1.0066 -3.4751 2.2963 35 1 0.1491 -2.6369 4.1059 36 1 -2.2031 -4.8876 6.7621 37 1 -2.7709 -6.3611 2.8159 38 1 -3.5120 -8.6905 2.5286 39 1 -2.9638 -10.3779 4.2343 40 1 -1.6650 -9.7438 6.2263 41 1 -0.9100 -7.4194 6.5172 42 1 1.6544 -4.5774 -1.9897 43 1 4.5840 -4.3514 -0.8932 44 1 4.0754 -5.1631 -2.4693 45 1 3.1151 -2.9637 -3.2923 46 1 3.6230 -2.1515 -1.7164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690156862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:42 Heat of formation + Delta-G solvation = 83.166857 kcal Electronic energy + Delta-G solvation = -28949.375160 eV Core-core repulsion = 25033.787863 eV Total energy + Delta-G solvation = -3915.587297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.54130 -40.46356 -39.99499 -38.94295 -36.17068 -35.34903 -34.94319 -32.87779 -32.07273 -31.33909 -30.35619 -29.34895 -25.83517 -24.89746 -24.17064 -23.92125 -23.07584 -22.96772 -22.02386 -21.42734 -20.77610 -19.81445 -19.08447 -17.73979 -17.23156 -17.11753 -16.98403 -16.78661 -16.14537 -16.00205 -15.91067 -15.55686 -15.28975 -15.01815 -14.95123 -14.84831 -14.67846 -14.48603 -14.24460 -13.81026 -13.66241 -12.98379 -12.90728 -12.71577 -12.62207 -12.39031 -12.28518 -12.24885 -11.94310 -11.78434 -11.69937 -11.22806 -11.04884 -10.99553 -10.86659 -10.75798 -10.20644 -9.96476 -9.80291 -9.60640 -8.98205 -7.86898 -5.14323 -0.17353 0.34562 0.44334 1.36512 1.49696 1.52041 1.59360 1.73255 2.21883 2.29487 2.59310 2.69164 3.09069 3.45590 3.51526 3.70958 3.78539 3.84341 3.90250 3.96173 4.00450 4.18068 4.18254 4.23045 4.35240 4.40213 4.41372 4.45433 4.56002 4.65793 4.69988 4.80846 4.86464 4.91651 4.98454 5.14260 5.17516 5.27933 5.36914 5.39844 5.41658 5.44184 5.48495 5.50667 5.64317 5.81040 6.18263 6.32448 6.44727 6.73146 7.09658 7.41300 8.11651 8.37023 9.35807 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.003078 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.973250 B = 9093.170666 C =10675.021146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.303 1.303 6 H -0.299 1.299 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.723 5.723 10 C 0.197 3.803 11 H 0.058 0.942 12 C 0.133 3.867 13 N -0.697 5.697 14 C 0.587 3.413 15 O -0.569 6.569 16 C -0.100 4.100 17 C 0.044 3.956 18 N -0.518 5.518 19 C 0.227 3.773 20 N -0.385 5.385 21 C 0.085 3.915 22 C -0.089 4.089 23 C -0.117 4.117 24 C -0.103 4.103 25 C -0.108 4.108 26 C -0.112 4.112 27 C -0.172 4.172 28 C -0.162 4.162 29 C -0.173 4.173 30 H 0.246 0.754 31 H 0.373 0.627 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.411 0.589 35 H 0.184 0.816 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -20.074 10.518 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.231 1.231 6 H -0.226 1.226 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.089 3.911 11 H 0.076 0.924 12 C 0.009 3.991 13 N -0.347 5.347 14 C 0.374 3.626 15 O -0.450 6.450 16 C -0.214 4.214 17 C -0.109 4.109 18 N -0.235 5.235 19 C -0.054 4.054 20 N -0.063 5.063 21 C -0.005 4.005 22 C -0.109 4.109 23 C -0.136 4.136 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.194 4.194 28 C -0.200 4.200 29 C -0.211 4.211 30 H 0.055 0.945 31 H 0.205 0.795 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.248 0.752 35 H 0.201 0.799 36 H 0.270 0.730 37 H 0.116 0.884 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.183 0.817 41 H 0.162 0.838 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.104 0.896 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.231 -20.187 10.728 22.970 hybrid contribution -0.013 1.530 -0.974 1.814 sum -2.244 -18.657 9.754 21.172 Atomic orbital electron populations 1.69802 1.06357 1.25442 1.60013 1.25327 0.96004 1.00283 1.04472 0.85315 0.78528 0.81244 0.76143 1.19065 1.23078 1.22643 1.19460 0.91109 0.84498 1.39627 0.90464 1.42564 1.05295 1.00356 1.88026 1.20148 0.94046 0.84637 0.92315 0.92375 1.21520 0.98136 0.97663 0.81755 1.45608 1.49800 1.21567 1.17754 1.16884 0.78606 0.84390 0.82749 1.90782 1.60954 1.20570 1.72667 1.20863 1.08560 0.95190 0.96828 1.22907 1.00376 0.95442 0.92168 1.70209 1.14127 1.21424 1.17783 1.26107 1.00702 0.85212 0.93396 1.42796 1.36743 1.10576 1.16160 1.17905 1.01635 0.81896 0.99036 1.21001 0.96283 0.98078 0.95523 1.21295 1.00250 0.91594 1.00431 1.21687 0.96630 1.00687 0.93043 1.21430 0.97207 0.95129 0.98842 1.21312 1.00093 0.92887 0.98784 1.22904 0.93977 1.03926 0.98551 1.23034 0.95138 0.98324 1.03478 1.22737 1.04752 0.94306 0.99289 0.94470 0.79518 0.89931 0.92679 0.75227 0.79857 0.72989 0.88372 0.83957 0.82216 0.81733 0.83802 0.88737 0.88629 0.87528 0.89592 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.67 13.06 21.65 0.28 -56.39 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 3 Si 0.96 44.72 29.55 68.60 2.03 46.74 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.22 -10.76 8.63 84.03 0.73 -10.04 16 8 H 0.08 3.74 6.91 -2.91 -0.02 3.72 16 9 N -0.72 -32.51 4.54 -322.94 -1.47 -33.98 16 10 C 0.20 7.00 2.70 44.99 0.12 7.12 16 11 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 12 C 0.13 4.38 5.22 86.38 0.45 4.84 16 13 N -0.70 -23.54 5.37 -467.06 -2.51 -26.05 16 14 C 0.59 20.61 7.77 86.45 0.67 21.28 16 15 O -0.57 -21.72 13.96 -4.30 -0.06 -21.78 16 16 C -0.10 -3.26 6.79 39.97 0.27 -2.99 16 17 C 0.04 1.42 11.36 84.11 0.96 2.38 16 18 N -0.52 -15.75 11.20 -199.34 -2.23 -17.98 16 19 C 0.23 5.48 12.31 180.25 2.22 7.70 16 20 N -0.39 -10.68 2.85 -339.42 -0.97 -11.64 16 21 C 0.08 2.13 5.34 38.11 0.20 2.33 16 22 C -0.09 -2.35 7.79 22.39 0.17 -2.18 16 23 C -0.12 -2.31 10.04 22.25 0.22 -2.09 16 24 C -0.10 -1.46 10.04 22.29 0.22 -1.24 16 25 C -0.11 -1.47 10.04 22.25 0.22 -1.24 16 26 C -0.11 -2.04 9.79 22.39 0.22 -1.82 16 27 C -0.17 -5.60 5.36 -10.80 -0.06 -5.66 16 28 C -0.16 -4.34 10.18 30.62 0.31 -4.03 16 29 C -0.17 -5.80 9.78 30.62 0.30 -5.50 16 30 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.37 18.76 7.80 -92.71 -0.72 18.03 16 32 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.41 14.17 7.09 -92.71 -0.66 13.51 16 35 H 0.18 5.77 7.47 -2.91 -0.02 5.74 16 36 H 0.25 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.10 3.06 7.79 -2.91 -0.02 3.04 16 38 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.09 3.01 8.11 -2.38 -0.02 2.99 16 43 H 0.10 2.42 8.05 -2.39 -0.02 2.40 16 44 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 46 H 0.08 3.11 6.23 -2.38 -0.01 3.09 16 Total: -1.00 -68.50 388.94 2.42 -66.08 By element: Atomic # 1 Polarization: 49.73 SS G_CDS: -0.36 Total: 49.37 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 7.70 Total: 5.62 kcal Atomic # 7 Polarization: -139.15 SS G_CDS: -6.89 Total: -146.04 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.50 2.42 -66.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690156862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.250 kcal (2) G-P(sol) polarization free energy of solvation -68.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds