Wall clock time and date at job start Sat Apr 11 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00165 * 2 1 4 4 H 1.48504 * 109.46727 * 240.00050 * 3 2 1 5 5 H 1.48497 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47123 * 120.00119 * 3 2 1 7 7 C 1.38810 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99912 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00316 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00015 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46983 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46973 * 65.00466 * 11 10 9 13 13 N 1.46494 * 109.47120 * 305.00221 * 11 10 9 14 14 C 1.34779 * 120.00278 * 154.99773 * 13 11 10 15 15 O 1.21647 * 119.99310 * 4.08373 * 14 13 11 16 16 C 1.47065 * 120.00500 * 184.07710 * 14 13 11 17 17 C 1.38075 * 126.49892 * 354.33230 * 16 14 13 18 18 C 1.39249 * 107.69755 * 180.27318 * 17 16 14 19 19 N 1.31011 * 108.82875 * 359.59119 * 18 17 16 20 20 N 1.36950 * 126.49650 * 174.36446 * 16 14 13 21 21 C 1.40022 * 126.16614 * 359.95381 * 20 16 14 22 22 C 1.38874 * 120.06792 * 315.54590 * 21 20 16 23 23 C 1.38116 * 119.92885 * 179.74857 * 22 21 20 24 24 C 1.38291 * 120.06695 * 0.55433 * 23 22 21 25 25 C 1.38285 * 120.14180 * 359.69511 * 24 23 22 26 26 C 1.38105 * 120.07573 * 0.02911 * 25 24 23 27 27 C 1.52998 * 109.46755 * 185.00365 * 11 10 9 28 28 C 1.53008 * 117.49675 * 248.74672 * 27 11 10 29 29 C 1.53002 * 117.49366 * 180.09134 * 27 11 10 30 30 H 0.97001 * 119.99278 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00258 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.46844 * 60.00607 * 10 9 7 33 33 H 1.08995 * 109.47146 * 300.00087 * 10 9 7 34 34 H 0.97007 * 120.00646 * 335.00468 * 13 11 10 35 35 H 1.08005 * 126.14500 * 0.02562 * 17 16 14 36 36 H 1.08004 * 125.58274 * 179.75312 * 18 17 16 37 37 H 1.08003 * 120.04127 * 0.02562 * 22 21 20 38 38 H 1.07998 * 119.96402 * 180.27585 * 23 22 21 39 39 H 1.07999 * 119.92466 * 179.72501 * 24 23 22 40 40 H 1.07998 * 119.96441 * 180.02562 * 25 24 23 41 41 H 1.07999 * 120.03895 * 180.02562 * 26 25 24 42 42 H 1.08998 * 115.55570 * 34.41777 * 27 11 10 43 43 H 1.08999 * 117.49824 * 0.02562 * 28 27 11 44 44 H 1.08994 * 117.49843 * 145.01979 * 28 27 11 45 45 H 1.09008 * 117.49547 * 214.97926 * 29 27 11 46 46 H 1.09001 * 117.50217 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8198 0.0012 12 1 0.4971 -4.8139 -0.9300 13 7 0.1445 -4.6758 1.1329 14 6 -1.0800 -5.2365 1.0821 15 8 -1.3950 -5.9241 0.1293 16 6 -2.0353 -5.0173 2.1786 17 6 -1.7856 -4.3580 3.3658 18 6 -2.9566 -4.3840 4.1189 19 7 -3.8828 -5.0132 3.4386 20 7 -3.3409 -5.4289 2.2160 21 6 -4.0129 -6.1374 1.2125 22 6 -3.8737 -5.7615 -0.1171 23 6 -4.5338 -6.4657 -1.1051 24 6 -5.3418 -7.5369 -0.7703 25 6 -5.4866 -7.9105 0.5532 26 6 -4.8248 -7.2141 1.5453 27 6 1.8244 -6.1412 0.1270 28 6 1.8335 -7.0697 -1.0891 29 6 1.0018 -7.4311 0.1441 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6845 -3.7146 0.8906 33 1 2.6846 -3.7146 -0.8894 34 1 0.4172 -4.1768 1.9188 35 1 -0.8491 -3.9071 3.6594 36 1 -3.0816 -3.9535 5.1015 37 1 -3.2464 -4.9222 -0.3788 38 1 -4.4224 -6.1765 -2.1396 39 1 -5.8604 -8.0831 -1.5443 40 1 -6.1179 -8.7478 0.8113 41 1 -4.9379 -7.5067 2.5788 42 1 2.7234 -6.1094 0.7426 43 1 1.2978 -6.7389 -1.9789 44 1 2.7383 -7.6489 -1.2733 45 1 1.3597 -8.2480 0.7707 46 1 -0.0815 -7.3383 0.0661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699579335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:14 Heat of formation + Delta-G solvation = 121.643648 kcal Electronic energy + Delta-G solvation = -29595.511859 eV Core-core repulsion = 25681.593041 eV Total energy + Delta-G solvation = -3913.918818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58134 -39.58088 -38.92171 -37.14517 -35.10635 -33.76966 -33.23968 -31.45505 -31.08850 -30.26051 -28.96784 -27.96476 -24.36407 -23.79051 -22.99038 -22.66958 -22.10102 -21.56261 -20.84153 -20.13766 -19.84243 -18.43211 -17.19603 -16.62201 -16.42155 -15.80469 -15.73996 -15.27493 -15.02858 -14.63020 -14.49484 -14.36192 -13.97619 -13.79111 -13.66494 -13.35630 -13.24871 -13.10752 -12.87542 -12.58284 -12.21374 -11.78925 -11.67823 -11.29532 -11.25055 -11.11268 -10.94338 -10.91782 -10.83302 -10.25092 -10.20473 -10.07602 -9.98315 -9.82499 -9.71111 -9.12708 -8.95990 -8.93870 -8.72585 -8.26363 -7.01870 -5.82162 -3.12708 0.70083 1.33619 1.54638 2.16585 2.53447 3.26002 3.31867 3.40476 3.45341 3.46353 3.67874 4.07303 4.51393 4.57048 4.66626 4.84216 4.85302 4.87108 5.05112 5.12368 5.16822 5.24108 5.31114 5.37000 5.44821 5.50654 5.53864 5.61336 5.71925 5.76840 5.81274 5.84376 5.92944 6.04530 6.17360 6.24806 6.27372 6.31576 6.37448 6.43361 6.50265 6.52223 6.58543 6.64919 6.81120 7.09005 7.46191 7.63728 7.69228 8.27518 8.35144 9.47113 10.01305 10.36653 11.39779 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.003578 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.699788 B = 7822.793179 C = 8888.397212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.172 3.828 12 H 0.090 0.910 13 N -0.686 5.686 14 C 0.583 3.417 15 O -0.530 6.530 16 C 0.042 3.958 17 C -0.209 4.209 18 C 0.046 3.954 19 N -0.271 5.271 20 N -0.294 5.294 21 C 0.141 3.859 22 C -0.067 4.067 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.105 4.105 27 C -0.164 4.164 28 C -0.169 4.169 29 C -0.186 4.186 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.027 0.973 33 H 0.038 0.962 34 H 0.408 0.592 35 H 0.162 0.838 36 H 0.194 0.806 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 -16.590 3.863 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.067 3.933 12 H 0.108 0.892 13 N -0.336 5.336 14 C 0.367 3.633 15 O -0.408 6.408 16 C -0.086 4.086 17 C -0.239 4.239 18 C -0.138 4.138 19 N -0.093 5.093 20 N -0.072 5.072 21 C 0.051 3.949 22 C -0.087 4.087 23 C -0.127 4.127 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.124 4.124 27 C -0.184 4.184 28 C -0.207 4.207 29 C -0.223 4.223 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.244 0.756 35 H 0.180 0.820 36 H 0.210 0.790 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.361 -17.345 3.107 19.097 hybrid contribution 1.307 1.619 0.544 2.151 sum -6.054 -15.726 3.651 17.242 Atomic orbital electron populations 1.69657 1.05099 1.25878 1.57132 1.24742 0.95487 0.97691 1.02644 0.86273 0.78532 0.83507 0.77865 1.21259 1.21694 1.21212 1.19149 0.91003 0.83984 1.43511 0.91147 1.42333 1.05936 0.99697 1.89699 1.20935 0.92940 0.84928 0.99213 1.20897 0.89993 0.93148 0.89212 0.89197 1.45712 1.13391 1.53332 1.21120 1.16923 0.81699 0.80082 0.84558 1.90749 1.77243 1.38708 1.34130 1.21243 0.86590 1.02768 0.98002 1.22041 1.01404 1.06527 0.93945 1.23853 0.90871 0.98592 1.00504 1.77477 1.21997 1.17849 0.91965 1.45938 1.06542 1.41474 1.13295 1.17359 0.98146 0.93438 0.85972 1.21124 0.97045 1.00013 0.90515 1.20992 0.96744 0.95697 0.99252 1.21233 0.98556 0.97128 0.96352 1.20934 1.00169 1.00080 0.92535 1.20954 0.97338 0.93839 1.00306 1.22640 1.01571 0.91298 1.02912 1.22886 1.02047 1.03040 0.92722 1.23359 1.00977 0.97284 1.00687 0.93396 0.78049 0.95573 0.94431 0.75615 0.82023 0.78962 0.84980 0.85205 0.85687 0.85448 0.85492 0.87782 0.88744 0.89226 0.90023 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.55 9.99 -15.06 -0.15 -6.70 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.73 -17.34 5.43 -59.91 -0.33 -17.66 16 10 C 0.15 2.73 5.80 -4.04 -0.02 2.71 16 11 C 0.17 2.72 2.42 -67.93 -0.16 2.56 16 12 H 0.09 1.60 7.40 -51.93 -0.38 1.22 16 13 N -0.69 -10.53 4.49 -55.00 -0.25 -10.77 16 14 C 0.58 9.41 6.87 -12.68 -0.09 9.32 16 15 O -0.53 -9.14 9.79 5.24 0.05 -9.08 16 16 C 0.04 0.65 6.78 -82.06 -0.56 0.10 16 17 C -0.21 -2.83 10.32 -39.27 -0.41 -3.24 16 18 C 0.05 0.58 11.96 -17.53 -0.21 0.37 16 19 N -0.27 -4.12 12.41 30.53 0.38 -3.74 16 20 N -0.29 -4.69 3.73 -7.08 -0.03 -4.72 16 21 C 0.14 2.16 5.92 -83.64 -0.49 1.66 16 22 C -0.07 -1.01 7.37 -39.39 -0.29 -1.30 16 23 C -0.11 -1.34 10.04 -39.61 -0.40 -1.74 16 24 C -0.11 -1.21 10.04 -39.54 -0.40 -1.60 16 25 C -0.12 -1.27 10.04 -39.61 -0.40 -1.66 16 26 C -0.10 -1.36 9.87 -39.39 -0.39 -1.75 16 27 C -0.16 -2.23 5.36 -90.62 -0.49 -2.71 16 28 C -0.17 -2.14 10.18 -26.69 -0.27 -2.41 16 29 C -0.19 -2.51 9.73 -26.69 -0.26 -2.77 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.39 9.78 7.33 -40.82 -0.30 9.48 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.41 5.98 7.54 -40.82 -0.31 5.67 16 35 H 0.16 1.83 7.47 -52.48 -0.39 1.44 16 36 H 0.19 1.67 8.06 -52.48 -0.42 1.24 16 37 H 0.13 2.23 6.68 -52.48 -0.35 1.88 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 43 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 46 H 0.12 1.90 4.83 -51.93 -0.25 1.65 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -31.63 384.38 -9.93 -41.55 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -6.18 Total: 17.96 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -5.08 Total: -9.50 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.50 Total: -63.50 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.05 Total: -9.08 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.63 -9.93 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699579335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.195 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds