Wall clock time and date at job start Sat Apr 11 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00165 * 2 1 4 4 H 1.48504 * 109.46727 * 240.00050 * 3 2 1 5 5 H 1.48497 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47123 * 120.00119 * 3 2 1 7 7 C 1.38810 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99912 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00316 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00015 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46983 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46973 * 65.00466 * 11 10 9 13 13 N 1.46494 * 109.47120 * 305.00221 * 11 10 9 14 14 C 1.34779 * 120.00278 * 154.99773 * 13 11 10 15 15 O 1.21647 * 119.99310 * 4.08373 * 14 13 11 16 16 C 1.47065 * 120.00500 * 184.07710 * 14 13 11 17 17 C 1.38075 * 126.49892 * 354.33230 * 16 14 13 18 18 C 1.39249 * 107.69755 * 180.27318 * 17 16 14 19 19 N 1.31011 * 108.82875 * 359.59119 * 18 17 16 20 20 N 1.36950 * 126.49650 * 174.36446 * 16 14 13 21 21 C 1.40022 * 126.16614 * 359.95381 * 20 16 14 22 22 C 1.38874 * 120.06792 * 315.54590 * 21 20 16 23 23 C 1.38116 * 119.92885 * 179.74857 * 22 21 20 24 24 C 1.38291 * 120.06695 * 0.55433 * 23 22 21 25 25 C 1.38285 * 120.14180 * 359.69511 * 24 23 22 26 26 C 1.38105 * 120.07573 * 0.02911 * 25 24 23 27 27 C 1.52998 * 109.46755 * 185.00365 * 11 10 9 28 28 C 1.53008 * 117.49675 * 248.74672 * 27 11 10 29 29 C 1.53002 * 117.49366 * 180.09134 * 27 11 10 30 30 H 0.97001 * 119.99278 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00258 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.46844 * 60.00607 * 10 9 7 33 33 H 1.08995 * 109.47146 * 300.00087 * 10 9 7 34 34 H 0.97007 * 120.00646 * 335.00468 * 13 11 10 35 35 H 1.08005 * 126.14500 * 0.02562 * 17 16 14 36 36 H 1.08004 * 125.58274 * 179.75312 * 18 17 16 37 37 H 1.08003 * 120.04127 * 0.02562 * 22 21 20 38 38 H 1.07998 * 119.96402 * 180.27585 * 23 22 21 39 39 H 1.07999 * 119.92466 * 179.72501 * 24 23 22 40 40 H 1.07998 * 119.96441 * 180.02562 * 25 24 23 41 41 H 1.07999 * 120.03895 * 180.02562 * 26 25 24 42 42 H 1.08998 * 115.55570 * 34.41777 * 27 11 10 43 43 H 1.08999 * 117.49824 * 0.02562 * 28 27 11 44 44 H 1.08994 * 117.49843 * 145.01979 * 28 27 11 45 45 H 1.09008 * 117.49547 * 214.97926 * 29 27 11 46 46 H 1.09001 * 117.50217 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8198 0.0012 12 1 0.4971 -4.8139 -0.9300 13 7 0.1445 -4.6758 1.1329 14 6 -1.0800 -5.2365 1.0821 15 8 -1.3950 -5.9241 0.1293 16 6 -2.0353 -5.0173 2.1786 17 6 -1.7856 -4.3580 3.3658 18 6 -2.9566 -4.3840 4.1189 19 7 -3.8828 -5.0132 3.4386 20 7 -3.3409 -5.4289 2.2160 21 6 -4.0129 -6.1374 1.2125 22 6 -3.8737 -5.7615 -0.1171 23 6 -4.5338 -6.4657 -1.1051 24 6 -5.3418 -7.5369 -0.7703 25 6 -5.4866 -7.9105 0.5532 26 6 -4.8248 -7.2141 1.5453 27 6 1.8244 -6.1412 0.1270 28 6 1.8335 -7.0697 -1.0891 29 6 1.0018 -7.4311 0.1441 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6845 -3.7146 0.8906 33 1 2.6846 -3.7146 -0.8894 34 1 0.4172 -4.1768 1.9188 35 1 -0.8491 -3.9071 3.6594 36 1 -3.0816 -3.9535 5.1015 37 1 -3.2464 -4.9222 -0.3788 38 1 -4.4224 -6.1765 -2.1396 39 1 -5.8604 -8.0831 -1.5443 40 1 -6.1179 -8.7478 0.8113 41 1 -4.9379 -7.5067 2.5788 42 1 2.7234 -6.1094 0.7426 43 1 1.2978 -6.7389 -1.9789 44 1 2.7383 -7.6489 -1.2733 45 1 1.3597 -8.2480 0.7707 46 1 -0.0815 -7.3383 0.0661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699579335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:13 Heat of formation + Delta-G solvation = 103.006419 kcal Electronic energy + Delta-G solvation = -29596.320030 eV Core-core repulsion = 25681.593041 eV Total energy + Delta-G solvation = -3914.726989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.68250 -40.81442 -39.89283 -38.37222 -36.63253 -35.20511 -34.37458 -33.15071 -32.12811 -31.53284 -29.99315 -29.49002 -26.05479 -25.07123 -24.01213 -23.77743 -23.17050 -23.06027 -21.89719 -21.31900 -21.01309 -19.67349 -19.01647 -17.79621 -17.53423 -16.91607 -16.89460 -16.66016 -16.42423 -15.85696 -15.70226 -15.59299 -15.21707 -15.09553 -14.84323 -14.73014 -14.55222 -14.33764 -14.16733 -13.78470 -13.54506 -13.19237 -12.76733 -12.75089 -12.59636 -12.50138 -12.32756 -12.23557 -12.11743 -11.99365 -11.84231 -11.35871 -11.17490 -11.06068 -10.98147 -10.90710 -10.25511 -10.01601 -9.88760 -9.29634 -9.00625 -7.92904 -5.22664 -0.37674 0.35626 0.49666 1.07987 1.48653 1.49835 1.51873 1.57997 2.05972 2.13011 2.57028 2.71052 2.98502 3.41246 3.46885 3.56869 3.62336 3.89883 3.92069 3.94677 4.11757 4.12937 4.17013 4.18336 4.31391 4.41253 4.42882 4.44659 4.54683 4.59811 4.62874 4.78709 4.83270 4.89568 4.98483 5.04723 5.10326 5.27408 5.28450 5.33155 5.34561 5.47938 5.50020 5.52989 5.54221 5.69375 6.05104 6.26728 6.32567 6.51094 7.03881 7.34940 8.07355 8.31144 9.29535 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.003578 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.699788 B = 7822.793179 C = 8888.397212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.300 1.300 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.183 3.817 12 H 0.064 0.936 13 N -0.682 5.682 14 C 0.580 3.420 15 O -0.544 6.544 16 C 0.014 3.986 17 C -0.206 4.206 18 C 0.052 3.948 19 N -0.294 5.294 20 N -0.305 5.305 21 C 0.114 3.886 22 C -0.091 4.091 23 C -0.116 4.116 24 C -0.106 4.106 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.164 4.164 28 C -0.160 4.160 29 C -0.186 4.186 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.411 0.589 35 H 0.182 0.818 36 H 0.234 0.766 37 H 0.100 0.900 38 H 0.142 0.858 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.098 0.902 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 -18.089 4.504 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.200 1.200 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.079 3.921 12 H 0.082 0.918 13 N -0.333 5.333 14 C 0.366 3.634 15 O -0.424 6.424 16 C -0.114 4.114 17 C -0.236 4.236 18 C -0.132 4.132 19 N -0.115 5.115 20 N -0.084 5.084 21 C 0.024 3.976 22 C -0.112 4.112 23 C -0.134 4.134 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.135 4.135 27 C -0.184 4.184 28 C -0.198 4.198 29 C -0.223 4.223 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.248 0.752 35 H 0.199 0.801 36 H 0.250 0.750 37 H 0.118 0.882 38 H 0.160 0.840 39 H 0.180 0.820 40 H 0.182 0.818 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.117 0.883 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.631 -18.879 3.747 20.357 hybrid contribution 1.077 2.004 0.318 2.297 sum -5.554 -16.875 4.064 18.224 Atomic orbital electron populations 1.69828 1.06638 1.25956 1.59355 1.25509 0.96208 1.00943 1.03621 0.85256 0.77157 0.79357 0.78224 1.20691 1.22687 1.20030 1.19580 0.91599 0.85021 1.41333 0.90209 1.42500 1.05586 1.00886 1.89596 1.21058 0.93236 0.83579 0.99770 1.20654 0.89350 0.93674 0.88427 0.91783 1.45623 1.13243 1.53395 1.20996 1.17053 0.81862 0.79897 0.84635 1.90738 1.77473 1.39380 1.34766 1.21391 0.86920 1.04321 0.98734 1.22397 1.02519 1.05523 0.93158 1.24540 0.89807 0.97296 1.01546 1.77425 1.23126 1.18767 0.92202 1.46099 1.06622 1.41955 1.13678 1.17689 0.99379 0.94623 0.85948 1.21002 0.98336 1.00283 0.91573 1.21255 0.96725 0.96147 0.99301 1.21642 0.97330 0.96026 0.97372 1.21390 0.99182 1.00120 0.91998 1.21164 0.97438 0.93582 1.01275 1.22564 1.01816 0.89852 1.04158 1.22969 1.02572 1.02350 0.91861 1.23259 0.99682 0.97630 1.01717 0.94238 0.79441 0.93848 0.94138 0.75234 0.80090 0.74994 0.88223 0.84009 0.81972 0.81794 0.85094 0.85940 0.89807 0.86685 0.88342 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.19 13.06 21.65 0.28 -57.90 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 3 Si 0.97 44.96 29.55 68.60 2.03 46.99 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.24 -12.95 9.99 84.03 0.84 -12.11 16 8 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -35.51 5.43 -343.44 -1.87 -37.38 16 10 C 0.15 5.47 5.80 86.38 0.50 5.97 16 11 C 0.18 5.88 2.42 44.99 0.11 5.99 16 12 H 0.06 2.39 7.40 -2.39 -0.02 2.38 16 13 N -0.68 -21.55 4.49 -446.14 -2.00 -23.55 16 14 C 0.58 19.78 6.87 86.56 0.59 20.37 16 15 O -0.54 -20.07 9.79 -4.18 -0.04 -20.11 16 16 C 0.01 0.45 6.78 40.62 0.28 0.72 16 17 C -0.21 -5.58 10.32 22.47 0.23 -5.35 16 18 C 0.05 1.28 11.96 85.06 1.02 2.29 16 19 N -0.29 -9.03 12.41 -57.34 -0.71 -9.74 16 20 N -0.30 -10.17 3.73 -176.32 -0.66 -10.83 16 21 C 0.11 3.64 5.92 38.14 0.23 3.87 16 22 C -0.09 -2.96 7.37 22.39 0.17 -2.79 16 23 C -0.12 -2.91 10.04 22.25 0.22 -2.69 16 24 C -0.11 -2.03 10.04 22.29 0.22 -1.80 16 25 C -0.11 -2.11 10.04 22.25 0.22 -1.88 16 26 C -0.11 -2.97 9.87 22.39 0.22 -2.75 16 27 C -0.16 -4.26 5.36 -10.79 -0.06 -4.32 16 28 C -0.16 -3.83 10.18 30.62 0.31 -3.51 16 29 C -0.19 -4.86 9.73 30.62 0.30 -4.56 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.37 19.57 7.33 -92.71 -0.68 18.89 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.41 12.21 7.54 -92.70 -0.70 11.51 16 35 H 0.18 3.99 7.47 -2.91 -0.02 3.97 16 36 H 0.23 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.10 3.77 6.68 -2.91 -0.02 3.75 16 38 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 42 H 0.12 2.77 8.11 -2.39 -0.02 2.75 16 43 H 0.08 2.19 8.05 -2.39 -0.02 2.17 16 44 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.10 2.23 8.14 -2.38 -0.02 2.22 16 46 H 0.10 3.09 4.83 -2.39 -0.01 3.08 16 Total: -1.00 -70.71 384.38 2.55 -68.16 By element: Atomic # 1 Polarization: 50.72 SS G_CDS: -0.36 Total: 50.36 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.87 Total: -5.99 kcal Atomic # 7 Polarization: -134.45 SS G_CDS: -4.95 Total: -139.41 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.04 Total: -20.11 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -70.71 2.55 -68.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699579335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.166 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds