Wall clock time and date at job start Sat Apr 11 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47137 * 269.99883 * 3 2 1 5 5 H 1.48503 * 109.46884 * 30.00012 * 3 2 1 6 6 H 1.48502 * 109.47201 * 149.99512 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21573 * 120.00276 * 359.72080 * 14 13 12 16 16 C 1.47649 * 119.99515 * 179.72387 * 14 13 12 17 17 C 1.40255 * 120.49218 * 179.97438 * 16 14 13 18 18 C 1.38003 * 118.35781 * 180.02562 * 17 16 14 19 19 C 1.39186 * 119.25615 * 359.97438 * 18 17 16 20 20 N 1.39402 * 119.53057 * 179.97438 * 19 18 17 21 21 C 1.36721 * 125.68923 * 359.69495 * 20 19 18 22 22 C 1.34768 * 108.18800 * 179.89091 * 21 20 19 23 23 C 1.41026 * 107.50309 * 0.36053 * 22 21 20 24 24 C 1.34774 * 107.49619 * 359.77553 * 23 22 21 25 25 N 1.32451 * 120.93621 * 359.97438 * 19 18 17 26 26 C 1.31631 * 121.80226 * 359.70108 * 25 19 18 27 27 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 28 28 C 1.52999 * 117.50225 * 8.74581 * 27 10 9 29 29 C 1.52999 * 117.49761 * 300.08359 * 27 10 9 30 30 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 32 32 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 33 33 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 35 35 H 1.08004 * 120.81881 * 359.97438 * 17 16 14 36 36 H 1.08001 * 120.37006 * 179.97438 * 18 17 16 37 37 H 1.08000 * 125.90326 * 0.03056 * 21 20 19 38 38 H 1.07996 * 126.25145 * 180.13866 * 22 21 20 39 39 H 1.08000 * 126.25293 * 179.78660 * 23 22 21 40 40 H 1.08000 * 125.90383 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.68295 * 180.30855 * 26 25 19 42 42 H 1.09006 * 115.55266 * 154.41988 * 27 10 9 43 43 H 1.08993 * 117.49781 * 359.97438 * 28 27 10 44 44 H 1.09000 * 117.50138 * 145.02405 * 28 27 10 45 45 H 1.09009 * 117.50018 * 214.98040 * 29 27 10 46 46 H 1.08997 * 117.49907 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.3997 -6.2243 -2.2228 16 6 -0.5119 -4.7243 -4.0089 17 6 -1.3374 -5.5591 -4.7763 18 6 -1.7352 -5.1210 -6.0230 19 6 -1.3086 -3.8754 -6.4744 20 7 -1.7066 -3.4275 -7.7331 21 6 -2.5004 -4.1136 -8.6097 22 6 -2.6627 -3.3556 -9.7121 23 6 -1.9384 -2.1615 -9.5162 24 6 -1.3637 -2.2312 -8.2991 25 7 -0.5298 -3.1097 -5.7251 26 6 -0.1322 -3.4858 -4.5279 27 6 2.4207 -4.0350 1.4391 28 6 1.8113 -3.1975 2.5652 29 6 3.2977 -3.0593 2.2264 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 0.3131 -4.9200 0.0295 33 1 1.7562 -5.6749 -0.6890 34 1 1.0081 -3.4761 -2.2960 35 1 -1.6531 -6.5214 -4.4011 36 1 -2.3705 -5.7378 -6.6414 37 1 -2.9257 -5.0927 -8.4459 38 1 -3.2391 -3.6165 -10.5873 39 1 -1.8588 -1.3411 -10.2140 40 1 -0.7398 -1.4733 -7.8490 41 1 0.4987 -2.8319 -3.9440 42 1 2.5619 -5.1000 1.6237 43 1 1.1523 -2.3769 2.2820 44 1 1.5519 -3.7114 3.4908 45 1 4.0155 -3.4823 2.9293 46 1 3.6158 -2.1478 1.7204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713121590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:43 Heat of formation + Delta-G solvation = 104.611505 kcal Electronic energy + Delta-G solvation = -28348.756058 eV Core-core repulsion = 24434.098671 eV Total energy + Delta-G solvation = -3914.657387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94975 -40.37753 -38.93827 -37.63061 -34.67950 -33.64688 -33.31106 -32.85025 -31.09233 -29.83334 -29.11649 -28.02059 -24.85200 -24.08817 -23.57401 -22.61649 -21.57586 -21.01305 -20.42262 -20.15201 -19.25348 -18.88913 -17.87538 -17.12518 -16.79528 -15.68114 -15.42563 -15.37672 -15.34644 -14.89297 -14.64648 -14.45961 -13.98677 -13.76739 -13.70777 -13.48281 -13.31079 -13.16176 -12.95069 -12.88666 -12.53905 -12.26804 -12.12824 -11.37085 -11.23132 -10.93885 -10.89141 -10.57429 -10.31387 -10.27189 -10.16569 -10.11723 -9.76465 -9.68936 -9.50230 -9.22500 -9.04279 -8.82950 -8.48957 -8.43999 -7.13797 -5.89378 -3.20138 0.19755 0.90045 2.00479 2.33758 2.77508 2.96675 3.30713 3.36062 3.42203 3.43831 3.70470 3.98953 4.33584 4.44754 4.57061 4.58642 4.60603 4.80039 4.90099 5.11157 5.21347 5.23369 5.29996 5.38469 5.41248 5.50206 5.57836 5.68449 5.77730 5.81349 5.91198 5.98145 5.98792 5.99714 6.01977 6.13033 6.34853 6.36780 6.58587 6.62707 6.65286 6.76882 6.78091 6.95651 7.09624 7.23422 7.55655 7.60577 7.72914 8.27225 8.33899 9.40091 9.92597 10.28815 11.31752 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.002829 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.496820 B = 9895.283224 C =11979.800880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.191 3.809 11 H 0.058 0.942 12 C 0.119 3.881 13 N -0.704 5.704 14 C 0.562 3.438 15 O -0.547 6.547 16 C -0.199 4.199 17 C 0.010 3.990 18 C -0.198 4.198 19 C 0.367 3.633 20 N -0.397 5.397 21 C -0.018 4.018 22 C -0.180 4.180 23 C -0.199 4.199 24 C 0.017 3.983 25 N -0.504 5.504 26 C 0.180 3.820 27 C -0.178 4.178 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.168 0.832 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.172 0.828 41 H 0.176 0.824 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 -10.239 -13.135 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.080 3.920 11 H 0.076 0.924 12 C -0.005 4.005 13 N -0.355 5.355 14 C 0.348 3.652 15 O -0.427 6.427 16 C -0.205 4.205 17 C -0.016 4.016 18 C -0.220 4.220 19 C 0.140 3.860 20 N -0.072 5.072 21 C -0.142 4.142 22 C -0.204 4.204 23 C -0.222 4.222 24 C -0.109 4.109 25 N -0.215 5.215 26 C 0.021 3.979 27 C -0.200 4.200 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.247 0.753 35 H 0.174 0.826 36 H 0.164 0.836 37 H 0.185 0.815 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.189 0.811 41 H 0.193 0.807 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.009 -10.112 -12.879 16.497 hybrid contribution 0.025 0.693 0.321 0.764 sum -1.984 -9.419 -12.558 15.823 Atomic orbital electron populations 1.69648 1.05028 1.25845 1.56879 1.24709 0.95404 0.97566 1.02584 0.86278 0.78763 0.84106 0.77545 1.21691 1.21859 1.20764 1.19146 0.90906 0.83726 1.43576 0.91027 1.42487 1.05833 0.99485 1.88181 1.20009 0.94098 0.86017 0.91868 0.92376 1.21652 0.99023 0.97628 0.82219 1.45908 1.49818 1.21664 1.18128 1.17806 0.78844 0.84457 0.84100 1.90756 1.57484 1.22446 1.72000 1.21058 1.04359 0.97550 0.97532 1.21561 0.90126 0.99039 0.90879 1.21485 1.05777 0.96281 0.98488 1.18467 0.92217 0.90074 0.85274 1.41499 1.38764 1.15958 1.10971 1.21912 1.01382 0.99987 0.90968 1.21053 1.04931 0.95611 0.98843 1.21094 1.03701 1.00076 0.97367 1.22190 1.04477 0.89284 0.94955 1.67031 1.13114 1.34423 1.06959 1.22966 0.93277 0.92626 0.89051 1.23056 1.06076 0.95373 0.95466 1.22916 0.96719 1.03492 0.96861 1.22859 0.93505 1.01870 1.03003 0.93392 0.77932 0.91334 0.91492 0.75309 0.82612 0.83595 0.81479 0.83863 0.83921 0.81060 0.80744 0.89593 0.86329 0.91277 0.91009 0.87886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.54 13.06 55.49 0.72 -24.82 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.24 -5.81 8.15 -15.06 -0.12 -5.93 16 8 H 0.07 1.70 6.91 -52.48 -0.36 1.34 16 9 N -0.72 -15.14 3.08 -53.42 -0.16 -15.31 16 10 C 0.19 3.29 2.86 -67.93 -0.19 3.10 16 11 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 12 C 0.12 1.87 5.22 -4.04 -0.02 1.85 16 13 N -0.70 -10.76 5.34 -61.31 -0.33 -11.09 16 14 C 0.56 8.73 7.77 -12.42 -0.10 8.64 16 15 O -0.55 -9.85 16.41 5.30 0.09 -9.76 16 16 C -0.20 -2.68 5.89 -104.81 -0.62 -3.29 16 17 C 0.01 0.12 9.70 -38.91 -0.38 -0.26 16 18 C -0.20 -2.08 9.46 -39.32 -0.37 -2.45 16 19 C 0.37 4.66 7.48 -154.57 -1.16 3.51 16 20 N -0.40 -4.75 2.96 -62.65 -0.19 -4.93 16 21 C -0.02 -0.17 10.71 -16.60 -0.18 -0.35 16 22 C -0.18 -1.70 10.86 -39.76 -0.43 -2.13 16 23 C -0.20 -2.05 10.86 -39.75 -0.43 -2.48 16 24 C 0.02 0.20 10.99 -16.60 -0.18 0.02 16 25 N -0.50 -7.08 9.80 -12.00 -0.12 -7.20 16 26 C 0.18 2.43 10.71 -17.15 -0.18 2.25 16 27 C -0.18 -2.95 5.70 -90.62 -0.52 -3.47 16 28 C -0.16 -2.94 9.74 -26.69 -0.26 -3.20 16 29 C -0.18 -3.02 9.87 -26.69 -0.26 -3.28 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 9.02 7.80 -40.82 -0.32 8.70 16 32 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.41 6.21 6.19 -40.82 -0.25 5.95 16 35 H 0.16 1.59 7.73 -52.48 -0.41 1.19 16 36 H 0.15 1.07 6.66 -52.49 -0.35 0.72 16 37 H 0.17 1.09 6.96 -52.49 -0.37 0.73 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.17 1.96 8.03 -52.49 -0.42 1.53 16 41 H 0.18 2.23 6.41 -52.49 -0.34 1.90 16 42 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 43 H 0.12 2.58 6.68 -51.93 -0.35 2.23 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 46 H 0.10 1.99 6.22 -51.93 -0.32 1.67 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -29.35 385.77 -10.69 -40.04 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -5.99 Total: 19.10 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -5.50 Total: -7.74 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.07 Total: -63.34 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.35 -10.69 -40.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713121590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.649 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds