Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47137 * 269.99883 * 3 2 1 5 5 H 1.48503 * 109.46884 * 30.00012 * 3 2 1 6 6 H 1.48502 * 109.47201 * 149.99512 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21573 * 120.00276 * 359.72080 * 14 13 12 16 16 C 1.47649 * 119.99515 * 179.72387 * 14 13 12 17 17 C 1.40255 * 120.49218 * 179.97438 * 16 14 13 18 18 C 1.38003 * 118.35781 * 180.02562 * 17 16 14 19 19 C 1.39186 * 119.25615 * 359.97438 * 18 17 16 20 20 N 1.39402 * 119.53057 * 179.97438 * 19 18 17 21 21 C 1.36721 * 125.68923 * 359.69495 * 20 19 18 22 22 C 1.34768 * 108.18800 * 179.89091 * 21 20 19 23 23 C 1.41026 * 107.50309 * 0.36053 * 22 21 20 24 24 C 1.34774 * 107.49619 * 359.77553 * 23 22 21 25 25 N 1.32451 * 120.93621 * 359.97438 * 19 18 17 26 26 C 1.31631 * 121.80226 * 359.70108 * 25 19 18 27 27 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 28 28 C 1.52999 * 117.50225 * 8.74581 * 27 10 9 29 29 C 1.52999 * 117.49761 * 300.08359 * 27 10 9 30 30 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 32 32 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 33 33 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 35 35 H 1.08004 * 120.81881 * 359.97438 * 17 16 14 36 36 H 1.08001 * 120.37006 * 179.97438 * 18 17 16 37 37 H 1.08000 * 125.90326 * 0.03056 * 21 20 19 38 38 H 1.07996 * 126.25145 * 180.13866 * 22 21 20 39 39 H 1.08000 * 126.25293 * 179.78660 * 23 22 21 40 40 H 1.08000 * 125.90383 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.68295 * 180.30855 * 26 25 19 42 42 H 1.09006 * 115.55266 * 154.41988 * 27 10 9 43 43 H 1.08993 * 117.49781 * 359.97438 * 28 27 10 44 44 H 1.09000 * 117.50138 * 145.02405 * 28 27 10 45 45 H 1.09009 * 117.50018 * 214.98040 * 29 27 10 46 46 H 1.08997 * 117.49907 * 0.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.3997 -6.2243 -2.2228 16 6 -0.5119 -4.7243 -4.0089 17 6 -1.3374 -5.5591 -4.7763 18 6 -1.7352 -5.1210 -6.0230 19 6 -1.3086 -3.8754 -6.4744 20 7 -1.7066 -3.4275 -7.7331 21 6 -2.5004 -4.1136 -8.6097 22 6 -2.6627 -3.3556 -9.7121 23 6 -1.9384 -2.1615 -9.5162 24 6 -1.3637 -2.2312 -8.2991 25 7 -0.5298 -3.1097 -5.7251 26 6 -0.1322 -3.4858 -4.5279 27 6 2.4207 -4.0350 1.4391 28 6 1.8113 -3.1975 2.5652 29 6 3.2977 -3.0593 2.2264 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 0.3131 -4.9200 0.0295 33 1 1.7562 -5.6749 -0.6890 34 1 1.0081 -3.4761 -2.2960 35 1 -1.6531 -6.5214 -4.4011 36 1 -2.3705 -5.7378 -6.6414 37 1 -2.9257 -5.0927 -8.4459 38 1 -3.2391 -3.6165 -10.5873 39 1 -1.8588 -1.3411 -10.2140 40 1 -0.7398 -1.4733 -7.8490 41 1 0.4987 -2.8319 -3.9440 42 1 2.5619 -5.1000 1.6237 43 1 1.1523 -2.3769 2.2820 44 1 1.5519 -3.7114 3.4908 45 1 4.0155 -3.4823 2.9293 46 1 3.6158 -2.1478 1.7204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713121590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = 89.602239 kcal Electronic energy + Delta-G solvation = -28349.406908 eV Core-core repulsion = 24434.098671 eV Total energy + Delta-G solvation = -3915.308238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.79185 -41.41524 -40.10177 -39.06713 -36.00318 -35.10640 -34.51791 -33.81387 -32.65996 -30.97908 -29.91109 -29.44569 -26.04272 -25.35572 -24.93055 -23.91370 -22.97156 -22.06810 -21.30614 -21.11135 -20.61222 -19.78142 -19.32973 -18.67110 -17.84133 -16.88138 -16.64295 -16.54633 -16.31759 -16.27146 -16.11178 -15.71430 -15.30217 -15.06966 -14.71619 -14.56335 -14.41168 -14.28991 -14.27240 -13.91476 -13.66717 -13.27631 -13.00749 -12.93376 -12.86608 -12.66152 -12.57891 -12.12219 -11.94614 -11.59368 -11.41986 -11.26760 -11.02396 -11.01372 -10.88809 -10.74443 -10.60358 -10.09535 -9.33562 -9.27093 -8.98727 -7.88244 -5.15244 -0.77320 -0.01967 1.11676 1.48742 1.50139 1.51286 1.56753 1.87257 2.02227 2.12388 2.58606 2.68821 3.06223 3.14906 3.46197 3.48457 3.60328 3.68017 3.80467 3.88562 4.00267 4.16230 4.26084 4.29126 4.35653 4.38825 4.48074 4.51803 4.59121 4.63620 4.66577 4.73616 4.88308 4.94967 4.98635 5.17731 5.20503 5.23090 5.25028 5.29853 5.41290 5.51163 5.68249 5.70301 5.83267 6.01863 6.25013 6.31768 6.47305 6.64661 7.09734 7.40950 8.11585 8.36602 9.33782 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.002829 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.496820 B = 9895.283224 C =11979.800880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.064 4.064 3 Si 0.952 3.048 4 H -0.292 1.292 5 H -0.306 1.306 6 H -0.273 1.273 7 C -0.216 4.216 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.190 3.810 11 H 0.063 0.937 12 C 0.128 3.872 13 N -0.704 5.704 14 C 0.565 3.435 15 O -0.573 6.573 16 C -0.211 4.211 17 C 0.014 3.986 18 C -0.183 4.183 19 C 0.356 3.644 20 N -0.407 5.407 21 C -0.019 4.019 22 C -0.187 4.187 23 C -0.196 4.196 24 C -0.020 4.020 25 N -0.529 5.529 26 C 0.174 3.826 27 C -0.166 4.166 28 C -0.174 4.174 29 C -0.172 4.172 30 H 0.246 0.754 31 H 0.374 0.626 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.409 0.591 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.202 0.798 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.171 0.829 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -12.514 -14.264 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.219 1.219 5 H -0.234 1.234 6 H -0.198 1.198 7 C -0.347 4.347 8 H 0.094 0.906 9 N -0.360 5.360 10 C 0.081 3.919 11 H 0.081 0.919 12 C 0.003 3.997 13 N -0.355 5.355 14 C 0.352 3.648 15 O -0.455 6.455 16 C -0.217 4.217 17 C -0.012 4.012 18 C -0.205 4.205 19 C 0.128 3.872 20 N -0.083 5.083 21 C -0.143 4.143 22 C -0.211 4.211 23 C -0.220 4.220 24 C -0.145 4.145 25 N -0.241 5.241 26 C 0.015 3.985 27 C -0.188 4.188 28 C -0.211 4.211 29 C -0.209 4.209 30 H 0.055 0.945 31 H 0.207 0.793 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.247 0.753 35 H 0.190 0.810 36 H 0.202 0.798 37 H 0.218 0.782 38 H 0.188 0.812 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.188 0.812 42 H 0.135 0.865 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.738 -12.404 -14.022 18.802 hybrid contribution -0.031 1.338 0.590 1.463 sum -1.769 -11.067 -13.431 17.493 Atomic orbital electron populations 1.69782 1.06224 1.25422 1.59890 1.25255 0.95913 1.00047 1.04465 0.85449 0.77866 0.81211 0.77078 1.21924 1.23369 1.19803 1.19386 0.91072 0.84493 1.39793 0.90577 1.42535 1.05288 1.00267 1.87941 1.20166 0.94076 0.84798 0.92830 0.91929 1.21546 0.98396 0.97585 0.82126 1.45904 1.49887 1.21678 1.18007 1.18039 0.78198 0.83922 0.84620 1.90733 1.58498 1.23446 1.72778 1.20931 1.05768 0.98113 0.96900 1.21792 0.89231 0.99231 0.90950 1.21811 1.05018 0.95478 0.98160 1.18832 0.92006 0.90772 0.85558 1.41689 1.39372 1.16260 1.10990 1.22592 1.00275 1.01072 0.90341 1.21455 1.04847 0.94997 0.99765 1.21435 1.02759 1.00939 0.96835 1.22291 1.06141 0.89974 0.96094 1.66986 1.14269 1.35532 1.07357 1.22891 0.93639 0.92808 0.89173 1.23056 1.04853 0.96832 0.94017 1.22773 0.96725 1.03120 0.98497 1.22848 0.93412 1.01224 1.03404 0.94529 0.79329 0.92522 0.89546 0.75327 0.81032 0.79794 0.78153 0.81237 0.82384 0.82077 0.81172 0.86492 0.90448 0.89169 0.88134 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.96 13.06 21.65 0.28 -54.67 16 2 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 3 Si 0.95 43.96 29.55 68.60 2.03 45.99 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.22 -10.40 8.15 84.04 0.69 -9.71 16 8 H 0.08 3.58 6.91 -2.91 -0.02 3.56 16 9 N -0.72 -30.70 3.08 -322.94 -0.99 -31.69 16 10 C 0.19 6.38 2.86 44.99 0.13 6.51 16 11 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 12 C 0.13 3.88 5.22 86.38 0.45 4.33 16 13 N -0.70 -21.46 5.34 -466.15 -2.49 -23.95 16 14 C 0.57 17.39 7.77 86.73 0.67 18.07 16 15 O -0.57 -20.18 16.41 -3.95 -0.06 -20.25 16 16 C -0.21 -5.62 5.89 -19.99 -0.12 -5.74 16 17 C 0.01 0.30 9.70 22.70 0.22 0.52 16 18 C -0.18 -3.41 9.46 22.44 0.21 -3.20 16 19 C 0.36 8.72 7.48 132.92 0.99 9.72 16 20 N -0.41 -9.28 2.96 -352.11 -1.04 -10.32 16 21 C -0.02 -0.32 10.71 83.13 0.89 0.57 16 22 C -0.19 -3.06 10.86 22.16 0.24 -2.82 16 23 C -0.20 -3.82 10.86 22.16 0.24 -3.58 16 24 C -0.02 -0.47 10.99 83.14 0.91 0.44 16 25 N -0.53 -15.16 9.80 -191.89 -1.88 -17.04 16 26 C 0.17 4.82 10.71 85.04 0.91 5.73 16 27 C -0.17 -5.17 5.70 -10.80 -0.06 -5.23 16 28 C -0.17 -6.11 9.74 30.62 0.30 -5.82 16 29 C -0.17 -5.59 9.87 30.62 0.30 -5.29 16 30 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.37 17.97 7.80 -92.71 -0.72 17.25 16 32 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.41 12.63 6.19 -92.71 -0.57 12.06 16 35 H 0.17 3.10 7.73 -2.91 -0.02 3.08 16 36 H 0.18 1.90 6.66 -2.91 -0.02 1.88 16 37 H 0.20 1.74 6.96 -2.91 -0.02 1.72 16 38 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.16 3.95 8.03 -2.91 -0.02 3.93 16 41 H 0.17 4.63 6.41 -2.91 -0.02 4.61 16 42 H 0.12 3.00 8.11 -2.38 -0.02 2.98 16 43 H 0.08 3.43 6.68 -2.39 -0.02 3.41 16 44 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 45 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 46 H 0.08 2.95 6.22 -2.39 -0.01 2.94 16 Total: -1.00 -64.85 385.77 3.02 -61.82 By element: Atomic # 1 Polarization: 48.77 SS G_CDS: -0.27 Total: 48.51 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 7.45 Total: 1.61 kcal Atomic # 7 Polarization: -131.55 SS G_CDS: -6.12 Total: -137.67 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.06 Total: -20.25 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -64.85 3.02 -61.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713121590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.424 kcal (2) G-P(sol) polarization free energy of solvation -64.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds