Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47120 * 272.02108 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.02736 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.02355 * 3 2 1 7 7 C 1.38806 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00584 * 336.82996 * 7 2 1 9 9 N 1.36937 * 119.99807 * 156.82707 * 7 2 1 10 10 C 1.46502 * 120.00168 * 320.88808 * 9 7 2 11 11 C 1.53000 * 109.46854 * 269.99954 * 10 9 7 12 12 N 1.46502 * 109.46854 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99831 * 179.97438 * 12 11 10 14 14 O 1.21587 * 120.00144 * 359.97438 * 13 12 11 15 15 C 1.47647 * 119.99977 * 180.02562 * 13 12 11 16 16 C 1.40258 * 120.49335 * 180.02562 * 15 13 12 17 17 C 1.37993 * 118.35399 * 180.02562 * 16 15 13 18 18 C 1.39177 * 119.26149 * 359.97438 * 17 16 15 19 19 N 1.39417 * 119.53397 * 179.97438 * 18 17 16 20 20 C 1.36711 * 125.68572 * 359.69630 * 19 18 17 21 21 C 1.34778 * 108.18616 * 179.88906 * 20 19 18 22 22 C 1.41018 * 107.50056 * 0.36379 * 21 20 19 23 23 C 1.34776 * 107.49866 * 359.77281 * 22 21 20 24 24 N 1.32452 * 120.93797 * 359.97438 * 18 17 16 25 25 C 1.31633 * 121.79595 * 359.70758 * 24 18 17 26 26 C 1.46507 * 119.99859 * 140.88250 * 9 7 2 27 27 C 1.53000 * 117.49983 * 4.02349 * 26 9 7 28 28 C 1.52995 * 117.49823 * 295.39808 * 26 9 7 29 29 H 0.97006 * 119.99495 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46749 * 29.99680 * 10 9 7 31 31 H 1.09003 * 109.47099 * 149.99748 * 10 9 7 32 32 H 1.09008 * 109.46908 * 299.99541 * 11 10 9 33 33 H 1.08999 * 109.47343 * 59.99496 * 11 10 9 34 34 H 0.96998 * 119.99936 * 0.02562 * 12 11 10 35 35 H 1.08000 * 120.82333 * 359.97244 * 16 15 13 36 36 H 1.08004 * 120.37251 * 179.97438 * 17 16 15 37 37 H 1.08000 * 125.90717 * 0.03200 * 20 19 18 38 38 H 1.07999 * 126.24730 * 180.14238 * 21 20 19 39 39 H 1.07997 * 126.25287 * 179.79292 * 22 21 20 40 40 H 1.08005 * 125.90597 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.68181 * 180.30864 * 25 24 18 42 42 H 1.09003 * 115.54478 * 149.72878 * 26 9 7 43 43 H 1.09004 * 117.49911 * 359.97438 * 27 26 9 44 44 H 1.08991 * 117.50014 * 145.02236 * 27 26 9 45 45 H 1.09007 * 117.49685 * 214.98173 * 28 26 9 46 46 H 1.08997 * 117.50336 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7425 6 1 3.5685 1.4282 0.6568 7 6 2.0102 -1.2021 0.0005 8 1 1.5356 -2.0996 0.3689 9 7 3.2967 -1.2502 -0.4661 10 6 3.6778 -0.4692 -1.6456 11 6 3.4608 -1.3096 -2.9056 12 7 3.8413 -0.5284 -4.0851 13 6 3.7340 -1.0693 -5.3148 14 8 3.3219 -2.2057 -5.4454 15 6 4.1181 -0.2822 -6.5036 16 6 4.0101 -0.8347 -7.7882 17 6 4.3818 -0.0601 -8.8681 18 6 4.8471 1.2333 -8.6495 19 7 5.2247 2.0206 -9.7363 20 6 5.1898 1.6384 -11.0484 21 6 5.6271 2.6691 -11.7986 22 6 5.9522 3.7242 -10.9213 23 6 5.6970 3.3017 -9.6672 24 7 4.9365 1.7267 -7.4236 25 6 4.5870 1.0248 -6.3662 26 6 4.2921 -2.0826 0.2142 27 6 3.8113 -2.9465 1.3819 28 6 4.6660 -1.7059 1.6492 29 1 -0.4850 0.8401 0.0004 30 1 3.0650 0.4306 -1.6990 31 1 4.7287 -0.1893 -1.5720 32 1 4.0737 -2.2095 -2.8521 33 1 2.4099 -1.5896 -2.9791 34 1 4.1711 0.3778 -3.9808 35 1 3.6460 -1.8417 -7.9288 36 1 4.3123 -0.4530 -9.8717 37 1 4.8654 0.6775 -11.4198 38 1 5.7160 2.6830 -12.8749 39 1 6.3354 4.6938 -11.2030 40 1 5.8411 3.8758 -8.7638 41 1 4.6692 1.4629 -5.3825 42 1 5.0795 -2.4877 -0.4213 43 1 2.7546 -2.8953 1.6442 44 1 4.2824 -3.9204 1.5147 45 1 5.6995 -1.8637 1.9579 46 1 4.1719 -0.8387 2.0870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713564462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 121.826011 kcal Electronic energy + Delta-G solvation = -27915.295006 eV Core-core repulsion = 24001.384096 eV Total energy + Delta-G solvation = -3913.910910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10903 -40.52472 -38.97669 -37.40554 -35.12600 -33.84660 -33.31293 -33.00287 -31.51016 -30.10102 -29.26553 -27.80816 -24.94573 -24.33327 -24.00854 -22.44668 -21.48703 -21.26778 -20.57358 -20.34168 -19.73032 -19.08921 -18.00952 -16.97822 -16.35321 -15.86881 -15.70840 -15.67279 -15.61052 -15.05088 -14.95460 -14.64034 -14.06582 -13.88614 -13.74883 -13.65947 -13.52941 -13.14554 -13.11366 -12.68499 -12.60020 -12.41369 -12.31108 -11.95086 -11.75181 -10.95049 -10.81343 -10.51453 -10.46701 -10.43936 -10.29797 -10.12232 -9.99434 -9.81787 -9.58923 -9.49692 -8.90674 -8.63464 -8.62582 -8.56905 -6.87412 -6.13949 -3.58284 0.02349 0.71096 1.85228 2.17156 2.63747 2.83396 3.11796 3.17329 3.36130 3.41178 3.53942 3.77285 4.17146 4.36870 4.37574 4.43229 4.56147 4.72697 4.76427 4.86137 4.93707 5.03306 5.08849 5.14965 5.22494 5.42247 5.57894 5.65802 5.71370 5.73349 5.84672 5.85293 5.92249 5.93741 5.99562 6.09095 6.36261 6.37504 6.47533 6.48951 6.55454 6.61515 6.72574 6.86568 6.94061 7.05772 7.34893 7.54568 7.91066 8.21894 8.28795 8.83661 9.55153 9.93819 11.00449 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.002210 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.552941 B =12665.745277 C =13242.325582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.041 3.959 3 Si 0.873 3.127 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.275 4.275 8 H 0.085 0.915 9 N -0.566 5.566 10 C 0.127 3.873 11 C 0.100 3.900 12 N -0.717 5.717 13 C 0.560 3.440 14 O -0.534 6.534 15 C -0.197 4.197 16 C 0.012 3.988 17 C -0.194 4.194 18 C 0.367 3.633 19 N -0.397 5.397 20 C -0.017 4.017 21 C -0.179 4.179 22 C -0.197 4.197 23 C 0.014 3.986 24 N -0.506 5.506 25 C 0.172 3.828 26 C 0.117 3.883 27 C -0.187 4.187 28 C -0.222 4.222 29 H 0.265 0.735 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.395 0.605 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.678 3.636 -19.122 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.161 4.161 3 Si 0.702 3.298 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.403 4.403 8 H 0.102 0.898 9 N -0.285 5.285 10 C 0.001 3.999 11 C -0.025 4.025 12 N -0.368 5.368 13 C 0.345 3.655 14 O -0.411 6.411 15 C -0.203 4.203 16 C -0.014 4.014 17 C -0.216 4.216 18 C 0.140 3.860 19 N -0.073 5.073 20 C -0.141 4.141 21 C -0.203 4.203 22 C -0.220 4.220 23 C -0.112 4.112 24 N -0.218 5.218 25 C 0.012 3.988 26 C 0.009 3.991 27 C -0.225 4.225 28 C -0.263 4.263 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.229 0.771 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.186 0.814 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.188 0.812 41 H 0.187 0.813 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.407 3.600 -18.843 22.846 hybrid contribution 0.199 0.734 0.071 0.763 sum 12.606 4.333 -18.772 23.023 Atomic orbital electron populations 1.69881 1.06035 1.26989 1.50010 1.25533 0.95077 0.97822 0.97651 0.87047 0.80897 0.84651 0.77164 1.21219 1.22683 1.19019 1.18728 0.86251 0.94671 1.40684 0.89794 1.43498 1.07351 1.52159 1.25487 1.21390 0.98325 0.94541 0.85647 1.22351 1.01924 0.95099 0.83122 1.46033 1.66093 1.18263 1.06402 1.17827 0.78604 0.86316 0.82731 1.90803 1.46051 1.18157 1.86127 1.21122 1.06987 0.96677 0.95531 1.21615 0.89965 1.00076 0.89788 1.21524 1.05339 0.93308 1.01457 1.18438 0.92944 0.88286 0.86345 1.41492 1.49401 1.12046 1.04323 1.21942 1.09705 1.01624 0.80868 1.21075 1.06051 0.93717 0.99489 1.21106 1.08321 1.00569 0.92039 1.22150 1.03919 0.84990 1.00115 1.66987 1.19554 1.37797 0.97451 1.22809 0.89954 0.89402 0.96637 1.21197 0.93945 0.97277 0.86683 1.23072 1.01192 0.93509 1.04727 1.23371 0.98437 0.99663 1.04799 0.92471 0.91856 0.93392 0.91769 0.90154 0.77093 0.82383 0.83414 0.81385 0.83766 0.83880 0.81155 0.81271 0.88931 0.87806 0.90373 0.90748 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.97 55.49 0.78 -25.20 16 2 C 0.04 1.12 5.28 -17.43 -0.09 1.03 16 3 Si 0.87 20.68 25.32 -169.99 -4.30 16.37 16 4 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 5 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.28 -7.19 8.93 -15.06 -0.13 -7.32 16 8 H 0.08 2.40 6.86 -52.48 -0.36 2.04 16 9 N -0.57 -12.44 2.38 -165.66 -0.39 -12.84 16 10 C 0.13 2.45 4.68 -4.04 -0.02 2.43 16 11 C 0.10 1.79 6.00 -4.04 -0.02 1.76 16 12 N -0.72 -10.41 5.51 -61.31 -0.34 -10.75 16 13 C 0.56 8.38 7.77 -12.42 -0.10 8.29 16 14 O -0.53 -9.88 16.41 5.29 0.09 -9.80 16 15 C -0.20 -2.34 5.89 -104.81 -0.62 -2.95 16 16 C 0.01 0.12 9.70 -38.91 -0.38 -0.25 16 17 C -0.19 -1.76 9.46 -39.32 -0.37 -2.14 16 18 C 0.37 3.98 7.48 -154.55 -1.16 2.82 16 19 N -0.40 -4.07 2.96 -62.64 -0.19 -4.25 16 20 C -0.02 -0.14 10.71 -16.60 -0.18 -0.32 16 21 C -0.18 -1.45 10.86 -39.76 -0.43 -1.88 16 22 C -0.20 -1.72 10.86 -39.76 -0.43 -2.15 16 23 C 0.01 0.14 10.99 -16.60 -0.18 -0.04 16 24 N -0.51 -5.83 9.80 -12.00 -0.12 -5.95 16 25 C 0.17 1.84 10.71 -17.15 -0.18 1.65 16 26 C 0.12 2.24 6.57 -67.93 -0.45 1.79 16 27 C -0.19 -3.43 9.80 -26.73 -0.26 -3.70 16 28 C -0.22 -4.05 10.34 -26.73 -0.28 -4.32 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.06 1.33 3.45 -51.93 -0.18 1.15 16 31 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.39 4.58 6.53 -40.82 -0.27 4.31 16 35 H 0.16 1.50 7.73 -52.49 -0.41 1.09 16 36 H 0.15 0.90 6.66 -52.48 -0.35 0.55 16 37 H 0.17 0.89 6.96 -52.49 -0.37 0.53 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.17 1.55 8.03 -52.48 -0.42 1.13 16 41 H 0.17 1.41 6.41 -52.49 -0.34 1.07 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 43 H 0.10 2.16 6.44 -51.93 -0.33 1.83 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -32.50 383.52 -9.97 -42.47 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.99 Total: 9.46 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -5.28 Total: -5.31 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.26 Total: -58.98 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.30 Total: 16.37 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.50 -9.97 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713564462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.295 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds