Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47120 * 272.02108 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.02736 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.02355 * 3 2 1 7 7 C 1.38806 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00584 * 336.82996 * 7 2 1 9 9 N 1.36937 * 119.99807 * 156.82707 * 7 2 1 10 10 C 1.46502 * 120.00168 * 320.88808 * 9 7 2 11 11 C 1.53000 * 109.46854 * 269.99954 * 10 9 7 12 12 N 1.46502 * 109.46854 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99831 * 179.97438 * 12 11 10 14 14 O 1.21587 * 120.00144 * 359.97438 * 13 12 11 15 15 C 1.47647 * 119.99977 * 180.02562 * 13 12 11 16 16 C 1.40258 * 120.49335 * 180.02562 * 15 13 12 17 17 C 1.37993 * 118.35399 * 180.02562 * 16 15 13 18 18 C 1.39177 * 119.26149 * 359.97438 * 17 16 15 19 19 N 1.39417 * 119.53397 * 179.97438 * 18 17 16 20 20 C 1.36711 * 125.68572 * 359.69630 * 19 18 17 21 21 C 1.34778 * 108.18616 * 179.88906 * 20 19 18 22 22 C 1.41018 * 107.50056 * 0.36379 * 21 20 19 23 23 C 1.34776 * 107.49866 * 359.77281 * 22 21 20 24 24 N 1.32452 * 120.93797 * 359.97438 * 18 17 16 25 25 C 1.31633 * 121.79595 * 359.70758 * 24 18 17 26 26 C 1.46507 * 119.99859 * 140.88250 * 9 7 2 27 27 C 1.53000 * 117.49983 * 4.02349 * 26 9 7 28 28 C 1.52995 * 117.49823 * 295.39808 * 26 9 7 29 29 H 0.97006 * 119.99495 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46749 * 29.99680 * 10 9 7 31 31 H 1.09003 * 109.47099 * 149.99748 * 10 9 7 32 32 H 1.09008 * 109.46908 * 299.99541 * 11 10 9 33 33 H 1.08999 * 109.47343 * 59.99496 * 11 10 9 34 34 H 0.96998 * 119.99936 * 0.02562 * 12 11 10 35 35 H 1.08000 * 120.82333 * 359.97244 * 16 15 13 36 36 H 1.08004 * 120.37251 * 179.97438 * 17 16 15 37 37 H 1.08000 * 125.90717 * 0.03200 * 20 19 18 38 38 H 1.07999 * 126.24730 * 180.14238 * 21 20 19 39 39 H 1.07997 * 126.25287 * 179.79292 * 22 21 20 40 40 H 1.08005 * 125.90597 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.68181 * 180.30864 * 25 24 18 42 42 H 1.09003 * 115.54478 * 149.72878 * 26 9 7 43 43 H 1.09004 * 117.49911 * 359.97438 * 27 26 9 44 44 H 1.08991 * 117.50014 * 145.02236 * 27 26 9 45 45 H 1.09007 * 117.49685 * 214.98173 * 28 26 9 46 46 H 1.08997 * 117.50336 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7425 6 1 3.5685 1.4282 0.6568 7 6 2.0102 -1.2021 0.0005 8 1 1.5356 -2.0996 0.3689 9 7 3.2967 -1.2502 -0.4661 10 6 3.6778 -0.4692 -1.6456 11 6 3.4608 -1.3096 -2.9056 12 7 3.8413 -0.5284 -4.0851 13 6 3.7340 -1.0693 -5.3148 14 8 3.3219 -2.2057 -5.4454 15 6 4.1181 -0.2822 -6.5036 16 6 4.0101 -0.8347 -7.7882 17 6 4.3818 -0.0601 -8.8681 18 6 4.8471 1.2333 -8.6495 19 7 5.2247 2.0206 -9.7363 20 6 5.1898 1.6384 -11.0484 21 6 5.6271 2.6691 -11.7986 22 6 5.9522 3.7242 -10.9213 23 6 5.6970 3.3017 -9.6672 24 7 4.9365 1.7267 -7.4236 25 6 4.5870 1.0248 -6.3662 26 6 4.2921 -2.0826 0.2142 27 6 3.8113 -2.9465 1.3819 28 6 4.6660 -1.7059 1.6492 29 1 -0.4850 0.8401 0.0004 30 1 3.0650 0.4306 -1.6990 31 1 4.7287 -0.1893 -1.5720 32 1 4.0737 -2.2095 -2.8521 33 1 2.4099 -1.5896 -2.9791 34 1 4.1711 0.3778 -3.9808 35 1 3.6460 -1.8417 -7.9288 36 1 4.3123 -0.4530 -9.8717 37 1 4.8654 0.6775 -11.4198 38 1 5.7160 2.6830 -12.8749 39 1 6.3354 4.6938 -11.2030 40 1 5.8411 3.8758 -8.7638 41 1 4.6692 1.4629 -5.3825 42 1 5.0795 -2.4877 -0.4213 43 1 2.7546 -2.8953 1.6442 44 1 4.2824 -3.9204 1.5147 45 1 5.6995 -1.8637 1.9579 46 1 4.1719 -0.8387 2.0870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713564462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 102.827473 kcal Electronic energy + Delta-G solvation = -27916.118845 eV Core-core repulsion = 24001.384096 eV Total energy + Delta-G solvation = -3914.734749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.80665 -41.44559 -40.06058 -38.99652 -36.50669 -35.08934 -34.51740 -33.84619 -33.29538 -31.07001 -29.91133 -29.23650 -26.37663 -25.52915 -24.95392 -23.84024 -22.94158 -22.28409 -21.46132 -21.29272 -21.11734 -19.82362 -19.14805 -18.15481 -17.90382 -17.40568 -17.13219 -16.66369 -16.39595 -16.27652 -16.22538 -15.62533 -15.48613 -14.96665 -14.77962 -14.56027 -14.45066 -14.33405 -14.20662 -14.15471 -13.92783 -13.54932 -13.34283 -13.27653 -13.01323 -12.69782 -12.51732 -12.10413 -11.85291 -11.74895 -11.47904 -11.31976 -11.29346 -11.03683 -10.98483 -10.82629 -10.62356 -10.18821 -9.35031 -9.27377 -8.68038 -8.22468 -5.63750 -0.80807 -0.04969 1.09794 1.26352 1.42660 1.48078 1.53408 1.83496 1.96102 2.01943 2.39507 2.65700 2.99813 3.03614 3.20508 3.33745 3.44665 3.56448 3.64675 3.79217 4.11696 4.12919 4.18706 4.25221 4.28950 4.37255 4.39687 4.46787 4.48709 4.57913 4.63871 4.70757 4.85648 4.92170 4.95999 5.03626 5.09112 5.14530 5.23278 5.28352 5.29468 5.37029 5.54833 5.81974 5.92341 6.00396 6.20349 6.24791 6.40089 6.60260 6.95281 7.07058 7.58703 7.98316 8.96410 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.002210 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.552941 B =12665.745277 C =13242.325582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.018 4.018 3 Si 0.937 3.063 4 H -0.258 1.258 5 H -0.314 1.314 6 H -0.254 1.254 7 C -0.258 4.258 8 H 0.042 0.958 9 N -0.580 5.580 10 C 0.127 3.873 11 C 0.118 3.882 12 N -0.709 5.709 13 C 0.563 3.437 14 O -0.576 6.576 15 C -0.212 4.212 16 C 0.012 3.988 17 C -0.184 4.184 18 C 0.360 3.640 19 N -0.407 5.407 20 C -0.022 4.022 21 C -0.187 4.187 22 C -0.197 4.197 23 C -0.015 4.015 24 N -0.523 5.523 25 C 0.177 3.823 26 C 0.103 3.897 27 C -0.191 4.191 28 C -0.208 4.208 29 H 0.263 0.737 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.411 0.589 35 H 0.164 0.836 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.190 0.810 42 H 0.128 0.872 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.857 4.445 -21.204 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.215 4.215 3 Si 0.765 3.235 4 H -0.184 1.184 5 H -0.243 1.243 6 H -0.178 1.178 7 C -0.387 4.387 8 H 0.059 0.941 9 N -0.300 5.300 10 C 0.002 3.998 11 C -0.008 4.008 12 N -0.361 5.361 13 C 0.351 3.649 14 O -0.456 6.456 15 C -0.218 4.218 16 C -0.015 4.015 17 C -0.206 4.206 18 C 0.132 3.868 19 N -0.083 5.083 20 C -0.146 4.146 21 C -0.211 4.211 22 C -0.221 4.221 23 C -0.140 4.140 24 N -0.236 5.236 25 C 0.017 3.983 26 C -0.004 4.004 27 C -0.229 4.229 28 C -0.248 4.248 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.249 0.751 35 H 0.182 0.818 36 H 0.198 0.802 37 H 0.215 0.785 38 H 0.185 0.815 39 H 0.177 0.823 40 H 0.187 0.813 41 H 0.207 0.793 42 H 0.146 0.854 43 H 0.085 0.915 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.651 4.439 -20.955 26.529 hybrid contribution -0.759 0.403 0.627 1.064 sum 14.892 4.842 -20.328 25.661 Atomic orbital electron populations 1.70026 1.07940 1.27566 1.53244 1.26167 0.95614 1.01441 0.98318 0.85986 0.79399 0.79737 0.78382 1.18389 1.24259 1.17834 1.18513 0.87999 0.93152 1.39082 0.94058 1.43589 1.06531 1.52951 1.26909 1.21453 1.00083 0.93487 0.84827 1.21863 0.99356 0.95464 0.84104 1.45816 1.65924 1.18818 1.05505 1.18223 0.77421 0.85922 0.83377 1.90780 1.47998 1.20122 1.86729 1.20868 1.09116 0.97105 0.94688 1.21764 0.89590 1.00489 0.89610 1.21766 1.03974 0.92333 1.02527 1.18776 0.92589 0.88985 0.86433 1.41673 1.49753 1.12133 1.04769 1.22549 1.09001 1.02915 0.80101 1.21458 1.05642 0.93360 1.00649 1.21445 1.07377 1.01446 0.91833 1.22338 1.05417 0.85484 1.00754 1.67034 1.20327 1.38208 0.97982 1.23053 0.89015 0.88787 0.97415 1.21556 0.94161 0.97179 0.87492 1.23050 0.99615 0.95485 1.04778 1.23343 0.99954 0.98146 1.03362 0.92814 0.93470 0.89440 0.91472 0.94531 0.75124 0.81835 0.80243 0.78541 0.81547 0.82341 0.81323 0.79330 0.85443 0.91481 0.87091 0.86944 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.86 13.97 21.65 0.30 -57.55 16 2 C -0.02 -1.03 5.28 84.86 0.45 -0.58 16 3 Si 0.94 43.03 25.32 68.60 1.74 44.76 16 4 H -0.26 -10.60 6.52 99.48 0.65 -9.95 16 5 H -0.31 -15.06 7.11 99.48 0.71 -14.36 16 6 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.26 -13.95 8.93 84.03 0.75 -13.20 16 8 H 0.04 2.54 6.86 -2.91 -0.02 2.52 16 9 N -0.58 -25.18 2.38 -678.02 -1.61 -26.79 16 10 C 0.13 4.64 4.68 86.38 0.40 5.05 16 11 C 0.12 4.16 6.00 86.38 0.52 4.68 16 12 N -0.71 -19.66 5.51 -466.14 -2.57 -22.23 16 13 C 0.56 16.49 7.77 86.73 0.67 17.16 16 14 O -0.58 -21.47 16.41 -3.99 -0.07 -21.54 16 15 C -0.21 -4.74 5.89 -19.99 -0.12 -4.86 16 16 C 0.01 0.22 9.70 22.70 0.22 0.44 16 17 C -0.18 -2.89 9.46 22.44 0.21 -2.67 16 18 C 0.36 7.08 7.48 132.92 0.99 8.08 16 19 N -0.41 -7.53 2.96 -352.10 -1.04 -8.57 16 20 C -0.02 -0.30 10.71 83.14 0.89 0.59 16 21 C -0.19 -2.54 10.86 22.16 0.24 -2.29 16 22 C -0.20 -3.08 10.86 22.16 0.24 -2.84 16 23 C -0.02 -0.28 10.99 83.14 0.91 0.63 16 24 N -0.52 -11.21 9.80 -191.89 -1.88 -13.09 16 25 C 0.18 3.47 10.71 85.04 0.91 4.38 16 26 C 0.10 3.72 6.57 44.99 0.30 4.02 16 27 C -0.19 -6.86 9.80 30.60 0.30 -6.56 16 28 C -0.21 -7.08 10.34 30.59 0.32 -6.76 16 29 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 30 H 0.05 1.89 3.45 -2.39 -0.01 1.88 16 31 H 0.09 2.54 8.07 -2.39 -0.02 2.53 16 32 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.41 8.57 6.53 -92.71 -0.61 7.96 16 35 H 0.16 2.89 7.73 -2.91 -0.02 2.87 16 36 H 0.18 1.53 6.66 -2.91 -0.02 1.51 16 37 H 0.20 1.33 6.96 -2.91 -0.02 1.31 16 38 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 39 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.17 3.00 8.03 -2.91 -0.02 2.97 16 41 H 0.19 2.70 6.41 -2.91 -0.02 2.68 16 42 H 0.13 3.74 8.14 -2.39 -0.02 3.72 16 43 H 0.07 2.91 6.44 -2.38 -0.02 2.90 16 44 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 46 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -74.80 383.52 3.44 -71.36 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.36 Total: 28.37 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 8.21 Total: 5.27 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -6.80 Total: -128.23 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.07 Total: -21.54 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.74 Total: 44.76 kcal Total: -74.80 3.44 -71.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713564462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.192 kcal (2) G-P(sol) polarization free energy of solvation -74.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds