Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99498 * 2 1 4 4 H 1.48500 * 109.47355 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47167 * 120.00229 * 3 2 1 6 6 H 1.48508 * 109.46642 * 239.99989 * 3 2 1 7 7 C 1.38812 * 120.00442 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99625 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99625 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99958 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47267 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.88713 * 302.57071 * 11 10 9 13 13 C 1.55159 * 111.00332 * 178.65000 * 11 10 9 14 14 C 1.54320 * 102.94115 * 206.42725 * 13 11 10 15 15 N 1.47018 * 107.27564 * 22.19359 * 14 13 11 16 16 C 1.34771 * 125.65298 * 181.10045 * 15 14 13 17 17 O 1.21508 * 120.00399 * 174.48978 * 16 15 14 18 18 C 1.48166 * 119.99867 * 354.48354 * 16 15 14 19 19 C 1.39952 * 120.88880 * 6.66106 * 18 16 15 20 20 C 1.38038 * 119.14020 * 179.79545 * 19 18 16 21 21 N 1.31857 * 120.98071 * 0.48924 * 20 19 18 22 22 C 1.32236 * 121.96752 * 359.74039 * 21 20 19 23 23 N 1.39799 * 119.62345 * 179.97438 * 22 21 20 24 24 C 1.36647 * 125.67978 * 179.71253 * 23 22 21 25 25 C 1.34800 * 108.19615 * 179.89343 * 24 23 22 26 26 C 1.40990 * 107.48373 * 0.37051 * 25 24 23 27 27 C 1.34802 * 107.48376 * 359.76745 * 26 25 24 28 28 C 1.38926 * 120.75204 * 0.02562 * 22 21 20 29 29 C 1.47425 * 108.69877 * 1.05762 * 15 14 13 30 30 H 0.97000 * 120.00125 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00470 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47105 * 300.00263 * 10 9 7 33 33 H 1.09004 * 109.46842 * 60.00142 * 10 9 7 34 34 H 1.08999 * 110.72038 * 324.79173 * 13 11 10 35 35 H 1.09002 * 110.71739 * 88.06382 * 13 11 10 36 36 H 1.09003 * 109.87883 * 262.77365 * 14 13 11 37 37 H 1.09002 * 110.01452 * 141.68953 * 14 13 11 38 38 H 1.07998 * 120.43084 * 0.02970 * 19 18 16 39 39 H 1.07995 * 119.51012 * 180.20793 * 20 19 18 40 40 H 1.08009 * 125.90027 * 0.02562 * 24 23 22 41 41 H 1.08002 * 126.26247 * 180.14021 * 25 24 23 42 42 H 1.07997 * 126.25509 * 179.75153 * 26 25 24 43 43 H 1.07999 * 125.90038 * 179.97438 * 27 26 25 44 44 H 1.07994 * 120.53263 * 180.02562 * 28 22 21 45 45 H 1.09007 * 110.36585 * 217.02838 * 29 15 14 46 46 H 1.09000 * 110.45806 * 94.76101 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1039 1.6966 1.2125 6 1 3.1038 1.6965 -1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2019 0.0001 9 7 1.3257 -2.3879 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0641 -4.8196 0.0012 12 1 0.3952 -4.7586 0.8596 13 6 1.8034 -6.1833 -0.0329 14 6 0.7720 -7.1191 -0.6977 15 7 -0.1562 -6.2731 -1.4620 16 6 -1.2159 -6.7106 -2.1704 17 8 -1.9753 -5.9126 -2.6832 18 6 -1.4549 -8.1648 -2.3241 19 6 -0.6763 -9.0981 -1.6303 20 6 -0.9331 -10.4441 -1.7970 21 7 -1.8902 -10.8576 -2.6041 22 6 -2.6474 -10.0124 -3.2830 23 7 -3.6483 -10.5047 -4.1257 24 6 -4.5018 -9.7468 -4.8770 25 6 -5.3176 -10.5786 -5.5550 26 6 -4.9630 -11.8977 -5.2055 27 6 -3.9401 -11.8238 -4.3306 28 6 -2.4587 -8.6407 -3.1692 29 6 0.2637 -4.8666 -1.3243 30 1 -0.4850 0.8400 0.0004 31 1 0.3558 -2.3880 -0.0002 32 1 2.6850 -3.7144 -0.8894 33 1 2.6849 -3.7144 0.8906 34 1 2.7086 -6.1163 -0.6364 35 1 2.0361 -6.5212 0.9770 36 1 0.2260 -7.6717 0.0669 37 1 1.2770 -7.8148 -1.3679 38 1 0.1126 -8.7694 -0.9700 39 1 -0.3382 -11.1694 -1.2619 40 1 -4.5183 -8.6678 -4.9217 41 1 -6.1021 -10.2878 -6.2379 42 1 -5.4265 -12.8019 -5.5715 43 1 -3.4383 -12.6623 -3.8708 44 1 -3.0794 -7.9536 -3.7250 45 1 -0.6078 -4.2146 -1.2645 46 1 0.8982 -4.5748 -2.1611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714353437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 103.550306 kcal Electronic energy + Delta-G solvation = -28068.875472 eV Core-core repulsion = 24154.172068 eV Total energy + Delta-G solvation = -3914.703404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08530 -40.83941 -39.49700 -37.79401 -34.95426 -33.86830 -33.14380 -32.20351 -30.58004 -29.98227 -29.20504 -28.73988 -26.28959 -24.81542 -24.08405 -23.38187 -22.16224 -21.23061 -20.55751 -20.16050 -19.96130 -18.73841 -17.45600 -17.05292 -16.56991 -16.48366 -15.89192 -15.61746 -15.60307 -15.00711 -14.75599 -14.44614 -14.11931 -13.90825 -13.84231 -13.66582 -13.54358 -13.23571 -12.92623 -12.82855 -12.68869 -12.63453 -12.35384 -12.07650 -11.69041 -11.29986 -10.90999 -10.75883 -10.70792 -10.58496 -10.47374 -10.45501 -10.26665 -10.08350 -9.94796 -9.71716 -8.91936 -8.80467 -8.60146 -8.56047 -6.97790 -5.79224 -3.09293 0.16577 0.38121 1.95045 2.17246 2.67330 2.70188 2.70845 3.41871 3.42256 3.46570 3.48064 3.81592 3.95597 4.25345 4.33623 4.44439 4.46913 4.57144 4.71288 4.75978 4.87932 4.97903 4.99735 5.09623 5.11610 5.20965 5.30252 5.31304 5.44270 5.52000 5.55117 5.74364 5.80084 5.84421 5.87455 5.91941 5.97024 5.99673 6.09960 6.27916 6.29706 6.54295 6.60196 6.68160 6.72941 7.00195 7.28179 7.37083 7.65855 7.88020 8.38667 9.49978 10.05939 10.40009 11.43195 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.001993 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.386328 B =14045.966185 C =15190.396169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.128 4.128 14 C 0.087 3.913 15 N -0.606 5.606 16 C 0.568 3.432 17 O -0.521 6.521 18 C -0.048 4.048 19 C -0.195 4.195 20 C 0.133 3.867 21 N -0.493 5.493 22 C 0.347 3.653 23 N -0.396 5.396 24 C -0.014 4.014 25 C -0.181 4.181 26 C -0.197 4.197 27 C 0.010 3.990 28 C -0.131 4.131 29 C 0.114 3.886 30 H 0.257 0.743 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.178 0.822 39 H 0.173 0.827 40 H 0.170 0.830 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.169 0.831 44 H 0.154 0.846 45 H 0.088 0.912 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 -26.905 -4.699 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.105 0.895 13 C -0.166 4.166 14 C -0.036 4.036 15 N -0.339 5.339 16 C 0.355 3.645 17 O -0.397 6.397 18 C -0.060 4.060 19 C -0.215 4.215 20 C -0.025 4.025 21 N -0.206 5.206 22 C 0.120 3.880 23 N -0.071 5.071 24 C -0.139 4.139 25 C -0.205 4.205 26 C -0.221 4.221 27 C -0.116 4.116 28 C -0.154 4.154 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.194 0.806 39 H 0.190 0.810 40 H 0.187 0.813 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.187 0.813 44 H 0.172 0.828 45 H 0.107 0.893 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.104 -27.130 -4.957 27.753 hybrid contribution 0.268 1.715 0.092 1.738 sum -2.836 -25.415 -4.864 26.031 Atomic orbital electron populations 1.69647 1.05122 1.25909 1.57262 1.24763 0.95523 0.97769 1.02781 0.86261 0.78518 0.83504 0.77829 1.21670 1.21246 1.21243 1.19151 0.90985 0.84096 1.43314 0.91180 1.42353 1.05895 0.99905 1.89611 1.20588 0.92666 0.84756 0.98308 1.22602 0.97883 0.94846 0.97158 0.89521 1.22733 0.97737 0.94607 1.01520 1.22594 0.91567 0.94351 0.95054 1.48407 1.27014 1.09879 1.48619 1.17677 0.80494 0.87064 0.79249 1.90835 1.44958 1.55991 1.47941 1.20187 0.95339 0.94127 0.96309 1.23705 1.02014 0.94105 1.01681 1.22607 0.92382 0.94422 0.93082 1.66831 1.06413 1.39238 1.08084 1.18090 0.89678 0.88601 0.91654 1.41469 1.24973 1.07301 1.33393 1.22018 0.95126 0.97849 0.98953 1.21060 1.02534 0.92820 1.04087 1.21077 1.00378 0.97903 1.02694 1.22053 1.01027 0.85242 1.03234 1.21633 0.99397 0.93999 1.00407 1.22444 0.99947 0.80214 0.98052 0.93358 0.78190 0.95986 0.95683 0.89920 0.89555 0.90355 0.90352 0.80583 0.81003 0.81302 0.83753 0.83956 0.81335 0.82837 0.89349 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.82 5.45 -59.91 -0.33 -18.14 16 10 C 0.16 2.99 5.71 -4.04 -0.02 2.97 16 11 C -0.11 -1.48 3.11 -88.47 -0.27 -1.75 16 12 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 13 C -0.13 -1.18 6.42 -24.90 -0.16 -1.34 16 14 C 0.09 0.73 4.88 -3.07 -0.01 0.71 16 15 N -0.61 -7.76 3.33 -171.90 -0.57 -8.33 16 16 C 0.57 8.12 7.83 -12.19 -0.10 8.03 16 17 O -0.52 -9.52 16.69 5.36 0.09 -9.43 16 18 C -0.05 -0.55 5.90 -104.67 -0.62 -1.17 16 19 C -0.20 -1.57 8.69 -39.01 -0.34 -1.91 16 20 C 0.13 1.01 11.17 -17.61 -0.20 0.81 16 21 N -0.49 -5.07 9.80 -12.35 -0.12 -5.19 16 22 C 0.35 3.91 7.48 -154.45 -1.16 2.76 16 23 N -0.40 -4.36 2.97 -62.68 -0.19 -4.55 16 24 C -0.01 -0.14 10.72 -16.63 -0.18 -0.32 16 25 C -0.18 -1.67 10.86 -39.76 -0.43 -2.10 16 26 C -0.20 -1.80 10.86 -39.76 -0.43 -2.23 16 27 C 0.01 0.10 11.00 -16.63 -0.18 -0.08 16 28 C -0.13 -1.51 9.05 -38.82 -0.35 -1.87 16 29 C 0.11 1.76 6.11 -2.53 -0.02 1.74 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.38 9.94 7.53 -40.82 -0.31 9.63 16 32 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.51 6.76 -51.93 -0.35 0.16 16 37 H 0.08 0.49 6.74 -51.93 -0.35 0.14 16 38 H 0.18 0.99 2.93 -52.99 -0.16 0.84 16 39 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.17 1.40 6.98 -52.48 -0.37 1.03 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.17 1.45 8.04 -52.49 -0.42 1.03 16 44 H 0.15 1.75 6.38 -52.49 -0.33 1.41 16 45 H 0.09 1.62 7.99 -51.93 -0.41 1.21 16 46 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -34.69 379.66 -10.45 -45.14 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.04 Total: 7.97 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -4.71 Total: -3.02 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.48 Total: -63.56 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.69 -10.45 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.689 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds