Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99498 * 2 1 4 4 H 1.48500 * 109.47355 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47167 * 120.00229 * 3 2 1 6 6 H 1.48508 * 109.46642 * 239.99989 * 3 2 1 7 7 C 1.38812 * 120.00442 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99625 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99625 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99958 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47267 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.88713 * 302.57071 * 11 10 9 13 13 C 1.55159 * 111.00332 * 178.65000 * 11 10 9 14 14 C 1.54320 * 102.94115 * 206.42725 * 13 11 10 15 15 N 1.47018 * 107.27564 * 22.19359 * 14 13 11 16 16 C 1.34771 * 125.65298 * 181.10045 * 15 14 13 17 17 O 1.21508 * 120.00399 * 174.48978 * 16 15 14 18 18 C 1.48166 * 119.99867 * 354.48354 * 16 15 14 19 19 C 1.39952 * 120.88880 * 6.66106 * 18 16 15 20 20 C 1.38038 * 119.14020 * 179.79545 * 19 18 16 21 21 N 1.31857 * 120.98071 * 0.48924 * 20 19 18 22 22 C 1.32236 * 121.96752 * 359.74039 * 21 20 19 23 23 N 1.39799 * 119.62345 * 179.97438 * 22 21 20 24 24 C 1.36647 * 125.67978 * 179.71253 * 23 22 21 25 25 C 1.34800 * 108.19615 * 179.89343 * 24 23 22 26 26 C 1.40990 * 107.48373 * 0.37051 * 25 24 23 27 27 C 1.34802 * 107.48376 * 359.76745 * 26 25 24 28 28 C 1.38926 * 120.75204 * 0.02562 * 22 21 20 29 29 C 1.47425 * 108.69877 * 1.05762 * 15 14 13 30 30 H 0.97000 * 120.00125 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00470 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47105 * 300.00263 * 10 9 7 33 33 H 1.09004 * 109.46842 * 60.00142 * 10 9 7 34 34 H 1.08999 * 110.72038 * 324.79173 * 13 11 10 35 35 H 1.09002 * 110.71739 * 88.06382 * 13 11 10 36 36 H 1.09003 * 109.87883 * 262.77365 * 14 13 11 37 37 H 1.09002 * 110.01452 * 141.68953 * 14 13 11 38 38 H 1.07998 * 120.43084 * 0.02970 * 19 18 16 39 39 H 1.07995 * 119.51012 * 180.20793 * 20 19 18 40 40 H 1.08009 * 125.90027 * 0.02562 * 24 23 22 41 41 H 1.08002 * 126.26247 * 180.14021 * 25 24 23 42 42 H 1.07997 * 126.25509 * 179.75153 * 26 25 24 43 43 H 1.07999 * 125.90038 * 179.97438 * 27 26 25 44 44 H 1.07994 * 120.53263 * 180.02562 * 28 22 21 45 45 H 1.09007 * 110.36585 * 217.02838 * 29 15 14 46 46 H 1.09000 * 110.45806 * 94.76101 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1039 1.6966 1.2125 6 1 3.1038 1.6965 -1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2019 0.0001 9 7 1.3257 -2.3879 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0641 -4.8196 0.0012 12 1 0.3952 -4.7586 0.8596 13 6 1.8034 -6.1833 -0.0329 14 6 0.7720 -7.1191 -0.6977 15 7 -0.1562 -6.2731 -1.4620 16 6 -1.2159 -6.7106 -2.1704 17 8 -1.9753 -5.9126 -2.6832 18 6 -1.4549 -8.1648 -2.3241 19 6 -0.6763 -9.0981 -1.6303 20 6 -0.9331 -10.4441 -1.7970 21 7 -1.8902 -10.8576 -2.6041 22 6 -2.6474 -10.0124 -3.2830 23 7 -3.6483 -10.5047 -4.1257 24 6 -4.5018 -9.7468 -4.8770 25 6 -5.3176 -10.5786 -5.5550 26 6 -4.9630 -11.8977 -5.2055 27 6 -3.9401 -11.8238 -4.3306 28 6 -2.4587 -8.6407 -3.1692 29 6 0.2637 -4.8666 -1.3243 30 1 -0.4850 0.8400 0.0004 31 1 0.3558 -2.3880 -0.0002 32 1 2.6850 -3.7144 -0.8894 33 1 2.6849 -3.7144 0.8906 34 1 2.7086 -6.1163 -0.6364 35 1 2.0361 -6.5212 0.9770 36 1 0.2260 -7.6717 0.0669 37 1 1.2770 -7.8148 -1.3679 38 1 0.1126 -8.7694 -0.9700 39 1 -0.3382 -11.1694 -1.2619 40 1 -4.5183 -8.6678 -4.9217 41 1 -6.1021 -10.2878 -6.2379 42 1 -5.4265 -12.8019 -5.5715 43 1 -3.4383 -12.6623 -3.8708 44 1 -3.0794 -7.9536 -3.7250 45 1 -0.6078 -4.2146 -1.2645 46 1 0.8982 -4.5748 -2.1611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714353437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 82.260669 kcal Electronic energy + Delta-G solvation = -28069.798660 eV Core-core repulsion = 24154.172068 eV Total energy + Delta-G solvation = -3915.626592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.82671 -41.74935 -40.36588 -38.94738 -36.56438 -34.85760 -34.01486 -33.61614 -32.02884 -30.84357 -29.92216 -29.82428 -27.61501 -26.11143 -24.90325 -24.62938 -23.45121 -22.04475 -21.42788 -21.21322 -20.82148 -19.63185 -19.06117 -18.26125 -17.62225 -17.26906 -16.79958 -16.66656 -16.50237 -16.38810 -15.95456 -15.44074 -15.29498 -15.10916 -14.80109 -14.73617 -14.54028 -14.43135 -14.10188 -13.92823 -13.76229 -13.35094 -13.29151 -13.10809 -13.03718 -12.71813 -12.65220 -12.21826 -12.13305 -11.82927 -11.67387 -11.61681 -11.48435 -11.28226 -11.01163 -10.93430 -10.77191 -9.85816 -9.32751 -9.29216 -9.00185 -7.95233 -5.24387 -0.63162 -0.36835 1.21089 1.41160 1.46586 1.49843 1.55956 1.69690 1.72719 1.99807 2.55679 2.64680 3.01251 3.24371 3.38315 3.49205 3.53432 3.53833 3.70986 3.88092 3.88423 4.15879 4.18738 4.22686 4.27183 4.32676 4.41847 4.44693 4.52238 4.61935 4.63498 4.64631 4.78095 4.78763 4.82468 5.01212 5.04327 5.14088 5.19487 5.24453 5.25418 5.32145 5.42607 5.50138 5.83360 5.99655 6.25957 6.26583 6.28695 6.65776 6.80476 7.32590 8.09893 8.30156 9.28166 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.001993 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.386328 B =14045.966185 C =15190.396169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.299 1.299 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.162 3.838 11 C -0.098 4.098 12 H 0.079 0.921 13 C -0.113 4.113 14 C 0.077 3.923 15 N -0.603 5.603 16 C 0.561 3.439 17 O -0.579 6.579 18 C -0.062 4.062 19 C -0.174 4.174 20 C 0.143 3.857 21 N -0.502 5.502 22 C 0.334 3.666 23 N -0.406 5.406 24 C -0.036 4.036 25 C -0.185 4.185 26 C -0.200 4.200 27 C -0.004 4.004 28 C -0.148 4.148 29 C 0.118 3.882 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.027 0.973 33 H 0.037 0.963 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.209 0.791 39 H 0.221 0.779 40 H 0.173 0.827 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.181 0.819 44 H 0.139 0.861 45 H 0.043 0.957 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 -30.162 -3.475 30.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.226 1.226 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.035 3.965 11 C -0.117 4.117 12 H 0.097 0.903 13 C -0.151 4.151 14 C -0.043 4.043 15 N -0.334 5.334 16 C 0.350 3.650 17 O -0.460 6.460 18 C -0.073 4.073 19 C -0.194 4.194 20 C -0.015 4.015 21 N -0.215 5.215 22 C 0.108 3.892 23 N -0.082 5.082 24 C -0.161 4.161 25 C -0.209 4.209 26 C -0.223 4.223 27 C -0.130 4.130 28 C -0.172 4.172 29 C -0.005 4.005 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.112 0.888 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.225 0.775 39 H 0.238 0.762 40 H 0.191 0.809 41 H 0.180 0.820 42 H 0.182 0.818 43 H 0.198 0.802 44 H 0.157 0.843 45 H 0.062 0.938 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.436 -30.453 -3.720 30.682 hybrid contribution -0.476 2.638 -0.275 2.695 sum -0.912 -27.815 -3.995 28.115 Atomic orbital electron populations 1.69827 1.06787 1.26082 1.59645 1.25621 0.96345 1.01363 1.03899 0.85198 0.77127 0.79053 0.78302 1.22587 1.19994 1.20411 1.19635 0.91647 0.85302 1.40940 0.90141 1.42641 1.05605 1.01488 1.89473 1.20804 0.93361 0.83654 0.98635 1.22430 0.97264 0.96396 0.95634 0.90288 1.22766 0.97575 0.90871 1.03849 1.23056 0.91030 0.94208 0.96039 1.48447 1.27212 1.09344 1.48404 1.18227 0.80043 0.88184 0.78501 1.90799 1.47094 1.57717 1.50389 1.19984 0.96772 0.92589 0.97986 1.24026 1.01298 0.93596 1.00430 1.23459 0.91259 0.95107 0.91644 1.66952 1.06937 1.39166 1.08454 1.18158 0.90290 0.88460 0.92302 1.41627 1.25177 1.07742 1.33623 1.22305 0.95735 0.98461 0.99618 1.21401 1.02608 0.92945 1.03967 1.21421 1.00064 0.98604 1.02232 1.22391 1.01585 0.85234 1.03752 1.21566 1.00054 0.94284 1.01269 1.22172 0.98130 0.81506 0.98696 0.94157 0.79743 0.95512 0.94465 0.88784 0.86343 0.87213 0.86796 0.77524 0.76248 0.80950 0.81980 0.81784 0.80211 0.84322 0.93847 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.75 13.06 21.65 0.28 -60.46 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 4 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.75 -37.12 5.45 -343.44 -1.87 -39.00 16 10 C 0.16 5.73 5.71 86.38 0.49 6.23 16 11 C -0.10 -2.63 3.11 -9.40 -0.03 -2.66 16 12 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 13 C -0.11 -1.59 6.42 31.78 0.20 -1.39 16 14 C 0.08 0.95 4.88 86.73 0.42 1.37 16 15 N -0.60 -14.96 3.33 -816.08 -2.71 -17.68 16 16 C 0.56 16.49 7.83 86.88 0.68 17.17 16 17 O -0.58 -23.06 16.69 -3.74 -0.06 -23.12 16 18 C -0.06 -1.36 5.90 -19.90 -0.12 -1.48 16 19 C -0.17 -2.12 8.69 22.64 0.20 -1.93 16 20 C 0.14 1.55 11.17 84.64 0.95 2.49 16 21 N -0.50 -9.16 9.80 -192.97 -1.89 -11.05 16 22 C 0.33 7.43 7.48 132.79 0.99 8.42 16 23 N -0.41 -9.02 2.97 -352.21 -1.04 -10.07 16 24 C -0.04 -0.76 10.72 83.15 0.89 0.13 16 25 C -0.19 -3.40 10.86 22.15 0.24 -3.16 16 26 C -0.20 -3.48 10.86 22.16 0.24 -3.24 16 27 C 0.00 -0.08 11.00 83.15 0.91 0.83 16 28 C -0.15 -3.55 9.05 22.76 0.21 -3.34 16 29 C 0.12 3.74 6.11 86.85 0.53 4.27 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.37 20.11 7.53 -92.71 -0.70 19.41 16 32 H 0.03 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.09 1.19 8.04 -2.39 -0.02 1.17 16 35 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 0.77 6.76 -2.39 -0.02 0.75 16 37 H 0.11 0.72 6.74 -2.39 -0.02 0.71 16 38 H 0.21 1.07 2.93 -3.39 -0.01 1.06 16 39 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 40 H 0.17 3.24 6.98 -2.91 -0.02 3.22 16 41 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.18 2.88 8.04 -2.91 -0.02 2.86 16 44 H 0.14 3.58 6.38 -2.91 -0.02 3.56 16 45 H 0.04 1.75 7.99 -2.38 -0.02 1.73 16 46 H 0.06 2.17 8.00 -2.39 -0.02 2.15 16 Total: -1.00 -81.64 379.66 3.16 -78.48 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.32 Total: 27.62 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 8.12 Total: 6.99 kcal Atomic # 7 Polarization: -131.01 SS G_CDS: -7.24 Total: -138.25 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.06 Total: -23.12 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -81.64 3.16 -78.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.741 kcal (2) G-P(sol) polarization free energy of solvation -81.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds