Wall clock time and date at job start Sat Apr 11 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00122 * 2 1 4 4 H 1.48500 * 109.46741 * 239.99741 * 3 2 1 5 5 H 1.48492 * 109.47248 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46958 * 120.00455 * 3 2 1 7 7 C 1.38811 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00056 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00157 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47317 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88321 * 51.12105 * 11 10 9 13 13 C 1.55155 * 111.00713 * 174.99911 * 11 10 9 14 14 C 1.54325 * 102.94307 * 153.57889 * 13 11 10 15 15 N 1.47026 * 107.26948 * 337.80880 * 14 13 11 16 16 C 1.34774 * 125.64621 * 178.67599 * 15 14 13 17 17 O 1.21513 * 119.99826 * 175.16109 * 16 15 14 18 18 C 1.48155 * 120.00104 * 355.16138 * 16 15 14 19 19 C 1.39957 * 120.89387 * 7.62159 * 18 16 15 20 20 C 1.38025 * 119.14396 * 179.97438 * 19 18 16 21 21 N 1.31866 * 120.98079 * 359.97438 * 20 19 18 22 22 C 1.32231 * 121.96911 * 0.02562 * 21 20 19 23 23 N 1.39796 * 119.62052 * 180.02562 * 22 21 20 24 24 C 1.36650 * 125.67238 * 179.69002 * 23 22 21 25 25 C 1.34811 * 108.19111 * 179.89292 * 24 23 22 26 26 C 1.40986 * 107.48402 * 0.37371 * 25 24 23 27 27 C 1.34806 * 107.48757 * 359.76546 * 26 25 24 28 28 C 1.38922 * 120.74948 * 359.74730 * 22 21 20 29 29 C 1.47430 * 108.70445 * 358.94105 * 15 14 13 30 30 H 0.97003 * 120.00050 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99685 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47303 * 60.00071 * 10 9 7 33 33 H 1.08996 * 109.47093 * 300.00594 * 10 9 7 34 34 H 1.09005 * 110.71909 * 35.21899 * 13 11 10 35 35 H 1.08994 * 110.87337 * 272.01621 * 13 11 10 36 36 H 1.09003 * 109.88100 * 218.39527 * 14 13 11 37 37 H 1.08992 * 109.88181 * 97.22222 * 14 13 11 38 38 H 1.08008 * 120.42515 * 359.97438 * 19 18 16 39 39 H 1.07998 * 119.51006 * 179.97438 * 20 19 18 40 40 H 1.08000 * 125.90678 * 0.02562 * 24 23 22 41 41 H 1.07997 * 126.25767 * 180.13519 * 25 24 23 42 42 H 1.08001 * 126.25461 * 179.75227 * 26 25 24 43 43 H 1.07995 * 125.90579 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.52983 * 180.25988 * 28 22 21 45 45 H 1.08995 * 110.36555 * 142.96781 * 29 15 14 46 46 H 1.08996 * 110.36179 * 265.29112 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8198 -0.0008 12 1 0.3244 -4.6995 -0.7927 13 6 1.7988 -6.1801 -0.1282 14 6 0.8251 -7.1644 0.5534 15 7 -0.0317 -6.3782 1.4531 16 6 -1.0311 -6.8681 2.2130 17 8 -1.6187 -6.1392 2.9877 18 6 -1.4134 -8.2953 2.1040 19 6 -0.6520 -9.1868 1.3396 20 6 -1.0409 -10.5089 1.2634 21 7 -2.1137 -10.9386 1.8986 22 6 -2.8628 -10.1327 2.6320 23 7 -3.9896 -10.6407 3.2850 24 6 -4.8433 -9.9240 4.0755 25 6 -5.8040 -10.7579 4.5216 26 6 -5.5317 -12.0375 3.9962 27 6 -4.4175 -11.9378 3.2440 28 6 -2.5394 -8.7883 2.7656 29 6 0.3794 -4.9642 1.3814 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 2.6853 -3.7150 0.8878 33 1 2.6839 -3.7142 -0.8921 34 1 2.7525 -6.1540 0.3990 35 1 1.9457 -6.4456 -1.1751 36 1 1.3854 -7.9030 1.1267 37 1 0.2139 -7.6621 -0.1994 38 1 0.2285 -8.8446 0.8160 39 1 -0.4579 -11.2019 0.6749 40 1 -4.7635 -8.8710 4.3018 41 1 -6.6291 -10.4947 5.1669 42 1 -6.1099 -12.9338 4.1656 43 1 -3.9444 -12.7439 2.7029 44 1 -3.1514 -8.1341 3.3689 45 1 -0.4919 -4.3122 1.4434 46 1 1.0846 -4.7333 2.1798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714353441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:17 Heat of formation + Delta-G solvation = 81.944217 kcal Electronic energy + Delta-G solvation = -28050.351813 eV Core-core repulsion = 24134.711498 eV Total energy + Delta-G solvation = -3915.640314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.82599 -41.74768 -40.36449 -38.94484 -36.56387 -34.85836 -34.01415 -33.61752 -32.02641 -30.84816 -29.92202 -29.83917 -27.60740 -26.11163 -24.90706 -24.59654 -23.46321 -22.04605 -21.44784 -21.22552 -20.82008 -19.62283 -19.05037 -18.25919 -17.64091 -17.27760 -16.82670 -16.64601 -16.51071 -16.40848 -15.89205 -15.44098 -15.30114 -15.08999 -14.80726 -14.73081 -14.53947 -14.44041 -14.08040 -13.96041 -13.76626 -13.36925 -13.29547 -13.08957 -13.03525 -12.72612 -12.66497 -12.21742 -12.11418 -11.84485 -11.66718 -11.63255 -11.48711 -11.28049 -11.01177 -10.93524 -10.77162 -9.86390 -9.32724 -9.29175 -9.00084 -7.95398 -5.24388 -0.63074 -0.36785 1.20986 1.40964 1.46723 1.49935 1.56013 1.68297 1.74148 1.99798 2.55750 2.64687 3.01238 3.24359 3.38084 3.49230 3.53506 3.53715 3.70902 3.86105 3.89989 4.15032 4.19614 4.22835 4.26309 4.32387 4.41634 4.44664 4.51608 4.61927 4.63476 4.65013 4.78108 4.78388 4.81981 5.01162 5.04292 5.12331 5.19453 5.24828 5.25783 5.32067 5.42095 5.50407 5.83339 5.99677 6.25797 6.26563 6.28536 6.65832 6.80063 7.32620 8.09842 8.30145 9.28040 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.001985 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.578923 B =14103.234947 C =15203.994569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.162 3.838 11 C -0.097 4.097 12 H 0.078 0.922 13 C -0.113 4.113 14 C 0.077 3.923 15 N -0.602 5.602 16 C 0.561 3.439 17 O -0.579 6.579 18 C -0.062 4.062 19 C -0.173 4.173 20 C 0.143 3.857 21 N -0.502 5.502 22 C 0.334 3.666 23 N -0.406 5.406 24 C -0.036 4.036 25 C -0.185 4.185 26 C -0.200 4.200 27 C -0.004 4.004 28 C -0.148 4.148 29 C 0.118 3.882 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.208 0.792 39 H 0.221 0.779 40 H 0.173 0.827 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.181 0.819 44 H 0.139 0.861 45 H 0.043 0.957 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -30.102 1.374 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.036 3.964 11 C -0.117 4.117 12 H 0.096 0.904 13 C -0.151 4.151 14 C -0.043 4.043 15 N -0.334 5.334 16 C 0.351 3.649 17 O -0.460 6.460 18 C -0.074 4.074 19 C -0.193 4.193 20 C -0.015 4.015 21 N -0.215 5.215 22 C 0.108 3.892 23 N -0.082 5.082 24 C -0.161 4.161 25 C -0.209 4.209 26 C -0.223 4.223 27 C -0.130 4.130 28 C -0.172 4.172 29 C -0.005 4.005 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.224 0.776 39 H 0.237 0.763 40 H 0.191 0.809 41 H 0.180 0.820 42 H 0.182 0.818 43 H 0.198 0.802 44 H 0.157 0.843 45 H 0.062 0.938 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.251 -30.414 1.633 30.483 hybrid contribution -0.352 2.581 0.509 2.655 sum -1.603 -27.832 2.142 27.961 Atomic orbital electron populations 1.69822 1.06766 1.26083 1.59640 1.25614 0.96358 1.01343 1.03886 0.85198 0.77138 0.79065 0.78291 1.19986 1.22553 1.20459 1.19634 0.91641 0.85312 1.40953 0.90180 1.42641 1.05588 1.01474 1.89472 1.20795 0.93360 0.83658 0.98612 1.22427 0.97973 0.96311 0.94993 0.90384 1.22761 0.98181 0.90448 1.03729 1.23058 0.92800 0.95143 0.93315 1.48457 1.32286 1.09977 1.42672 1.18209 0.79255 0.87399 0.80055 1.90795 1.55073 1.60938 1.39158 1.19988 0.95985 0.92922 0.98464 1.24005 1.02768 0.94083 0.98440 1.23455 0.90066 0.94570 0.93403 1.66952 1.07370 1.38527 1.08679 1.18158 0.88517 0.88773 0.93776 1.41628 1.19218 1.09825 1.37497 1.22308 0.94004 0.99368 1.00434 1.21403 1.00990 0.93467 1.05066 1.21421 0.98913 0.99192 1.02798 1.22390 0.99063 0.85880 1.05637 1.21568 0.98959 0.94471 1.02173 1.22204 0.98577 0.81052 0.98623 0.94147 0.79743 0.95632 0.94386 0.88715 0.86502 0.86628 0.87390 0.77555 0.76269 0.80932 0.81979 0.81790 0.80222 0.84307 0.93812 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 3 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.75 -37.02 5.55 -343.46 -1.91 -38.93 16 10 C 0.16 5.74 5.72 86.38 0.49 6.24 16 11 C -0.10 -2.62 3.05 -9.40 -0.03 -2.65 16 12 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 13 C -0.11 -1.61 6.42 31.78 0.20 -1.40 16 14 C 0.08 0.94 4.88 86.73 0.42 1.37 16 15 N -0.60 -14.76 3.33 -815.58 -2.71 -17.47 16 16 C 0.56 16.30 7.83 86.88 0.68 16.98 16 17 O -0.58 -22.68 16.76 -3.76 -0.06 -22.74 16 18 C -0.06 -1.36 5.90 -19.90 -0.12 -1.48 16 19 C -0.17 -2.10 8.67 22.64 0.20 -1.91 16 20 C 0.14 1.55 11.17 84.64 0.95 2.49 16 21 N -0.50 -9.17 9.80 -192.98 -1.89 -11.06 16 22 C 0.33 7.43 7.48 132.79 0.99 8.42 16 23 N -0.41 -9.03 2.97 -352.21 -1.04 -10.07 16 24 C -0.04 -0.76 10.72 83.16 0.89 0.13 16 25 C -0.19 -3.40 10.86 22.16 0.24 -3.16 16 26 C -0.20 -3.48 10.86 22.16 0.24 -3.24 16 27 C 0.00 -0.08 11.00 83.15 0.91 0.83 16 28 C -0.15 -3.54 9.05 22.76 0.21 -3.33 16 29 C 0.12 3.69 6.31 86.85 0.55 4.24 16 30 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.37 20.01 7.67 -92.71 -0.71 19.30 16 32 H 0.03 0.91 7.96 -2.39 -0.02 0.89 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.18 8.04 -2.38 -0.02 1.16 16 35 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 0.68 6.82 -2.39 -0.02 0.66 16 37 H 0.11 0.80 6.68 -2.39 -0.02 0.78 16 38 H 0.21 1.05 2.96 -3.19 -0.01 1.04 16 39 H 0.22 0.23 8.06 -2.91 -0.02 0.21 16 40 H 0.17 3.23 6.98 -2.91 -0.02 3.21 16 41 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 43 H 0.18 2.89 8.04 -2.91 -0.02 2.86 16 44 H 0.14 3.57 6.38 -2.91 -0.02 3.55 16 45 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 46 H 0.07 2.16 7.90 -2.39 -0.02 2.14 16 Total: -1.00 -81.18 379.99 3.14 -78.04 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.31 Total: 27.42 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 8.14 Total: 6.81 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -7.27 Total: -137.72 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -81.18 3.14 -78.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.983 kcal (2) G-P(sol) polarization free energy of solvation -81.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds