Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86794 * 120.00113 * 2 1 4 4 H 1.48506 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47368 * 299.99576 * 3 2 1 6 6 H 1.48497 * 109.47590 * 59.99776 * 3 2 1 7 7 C 1.38808 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00522 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00195 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47031 * 180.02562 * 10 9 7 12 12 C 1.38237 * 120.00122 * 90.00172 * 11 10 9 13 13 C 1.38228 * 120.00072 * 179.97438 * 12 11 10 14 14 C 1.38241 * 120.00180 * 0.02713 * 13 12 11 15 15 C 1.50702 * 120.00003 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.46998 * 89.99592 * 15 14 13 17 17 C 1.34778 * 119.99896 * 179.97438 * 16 15 14 18 18 O 1.21611 * 120.00097 * 0.02562 * 17 16 15 19 19 C 1.47428 * 120.00234 * 179.97438 * 17 16 15 20 20 C 1.41204 * 126.43890 * 359.96394 * 19 17 16 21 21 N 1.30286 * 108.02960 * 179.97438 * 20 19 17 22 22 N 1.40385 * 109.08575 * 359.94881 * 21 20 19 23 23 C 1.34213 * 108.13290 * 0.18006 * 22 21 20 24 24 C 1.51388 * 110.37341 * 179.76103 * 23 22 21 25 25 C 1.54565 * 104.14194 * 343.53699 * 24 23 22 26 26 C 1.47252 * 140.96089 * 180.32447 * 22 21 20 27 27 C 1.38233 * 119.99692 * 0.24874 * 14 13 12 28 28 C 1.38231 * 120.00260 * 359.49562 * 27 14 13 29 29 H 0.97004 * 119.99803 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99669 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47348 * 60.00409 * 10 9 7 32 32 H 1.09000 * 109.47388 * 300.00168 * 10 9 7 33 33 H 1.08001 * 119.99732 * 0.02562 * 12 11 10 34 34 H 1.07999 * 120.00126 * 180.02562 * 13 12 11 35 35 H 1.09005 * 109.46880 * 329.99847 * 15 14 13 36 36 H 1.09000 * 109.46784 * 209.99798 * 15 14 13 37 37 H 0.96999 * 120.00740 * 0.02562 * 16 15 14 38 38 H 1.08002 * 125.98388 * 359.92200 * 20 19 17 39 39 H 1.08997 * 110.49778 * 224.86504 * 24 23 22 40 40 H 1.09000 * 110.49275 * 102.19491 * 24 23 22 41 41 H 1.09007 * 110.98862 * 266.93911 * 25 24 23 42 42 H 1.08998 * 111.02563 * 143.13651 * 25 24 23 43 43 H 1.09002 * 110.23109 * 77.92867 * 26 22 21 44 44 H 1.09000 * 110.22779 * 316.05728 * 26 22 21 45 45 H 1.07998 * 119.99899 * 179.72835 * 27 14 13 46 46 H 1.07997 * 120.00360 * 180.25232 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0785 -4.8022 -0.0001 12 6 0.6298 -5.3273 -1.1975 13 6 -0.2680 -6.3783 -1.1981 14 6 -0.7178 -6.9039 -0.0012 15 6 -1.6971 -8.0493 -0.0019 16 7 -0.9647 -9.3180 -0.0019 17 6 -1.6386 -10.4852 -0.0019 18 8 -2.8547 -10.4851 -0.0024 19 6 -0.9015 -11.7620 -0.0026 20 6 0.5016 -11.9204 -0.0038 21 7 0.7633 -13.1967 -0.0035 22 7 -0.4442 -13.9129 -0.0007 23 6 -1.4541 -13.0289 -0.0035 24 6 -2.7854 -13.7497 -0.0066 25 6 -2.4321 -15.1936 -0.4301 26 6 -0.9548 -15.2940 0.0064 27 6 -0.2735 -6.3750 1.1962 28 6 0.6285 -5.3275 1.1968 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6845 -3.7146 0.8906 32 1 2.6846 -3.7146 -0.8894 33 1 0.9815 -4.9169 -2.1326 34 1 -0.6183 -6.7888 -2.1336 35 1 -2.3234 -7.9913 -0.8922 36 1 -2.3241 -7.9917 0.8879 37 1 0.0053 -9.3181 -0.0012 38 1 1.2302 -11.1232 -0.0058 39 1 -3.4638 -13.2953 -0.7286 40 1 -3.2261 -13.7415 0.9903 41 1 -2.5299 -15.3192 -1.5085 42 1 -3.0468 -15.9190 0.1028 43 1 -0.8859 -15.7162 1.0090 44 1 -0.3940 -15.9068 -0.6993 45 1 -0.6281 -6.7827 2.1312 46 1 0.9787 -4.9170 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715194566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 86.211052 kcal Electronic energy + Delta-G solvation = -27190.133119 eV Core-core repulsion = 23274.677829 eV Total energy + Delta-G solvation = -3915.455291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23494 -39.70714 -38.84703 -36.81885 -35.45292 -34.25623 -32.16923 -31.45012 -30.68439 -30.13606 -29.91352 -28.07547 -26.60713 -24.38575 -22.93467 -22.57411 -22.45277 -22.12625 -20.82912 -20.46125 -19.89946 -17.96729 -17.27502 -17.03259 -16.16604 -15.64907 -15.56632 -15.12809 -15.01216 -14.78895 -14.59168 -14.54411 -14.34413 -14.11892 -13.70514 -13.57923 -13.36340 -13.18228 -13.13750 -12.73059 -12.58668 -12.30137 -12.19896 -12.01989 -11.82088 -11.79773 -11.31409 -11.05993 -10.86327 -10.71155 -10.56293 -10.05874 -10.02823 -9.78728 -9.77547 -9.25892 -8.90911 -8.89654 -8.65508 -8.40684 -6.94079 -5.76639 -3.06478 1.16485 1.42949 1.67491 1.71946 1.82764 3.20834 3.28415 3.43485 3.47488 3.48978 3.51389 3.89695 4.02978 4.08471 4.15514 4.46365 4.61769 4.67044 4.75793 4.80606 4.88007 4.92232 5.00833 5.11410 5.23037 5.26654 5.30320 5.38371 5.40358 5.43767 5.57446 5.69950 5.78031 5.89344 6.02229 6.16486 6.19999 6.21004 6.22803 6.32047 6.50831 6.59610 6.66591 6.73912 7.12499 7.20573 7.25270 7.45910 7.69389 8.16843 8.41092 9.52773 10.08976 10.44695 11.45876 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036275 B = 0.001606 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.706282 B =17425.945144 C =17864.090132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.727 5.727 10 C 0.184 3.816 11 C -0.065 4.065 12 C -0.107 4.107 13 C -0.103 4.103 14 C -0.124 4.124 15 C 0.169 3.831 16 N -0.721 5.721 17 C 0.594 3.406 18 O -0.551 6.551 19 C -0.280 4.280 20 C 0.086 3.914 21 N -0.275 5.275 22 N -0.384 5.384 23 C 0.137 3.863 24 C -0.070 4.070 25 C -0.134 4.134 26 C 0.125 3.875 27 C -0.103 4.103 28 C -0.107 4.107 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.400 0.600 38 H 0.197 0.803 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.119 0.881 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 -33.861 -0.156 34.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.057 3.943 11 C -0.065 4.065 12 C -0.125 4.125 13 C -0.122 4.122 14 C -0.125 4.125 15 C 0.046 3.954 16 N -0.372 5.372 17 C 0.382 3.618 18 O -0.430 6.430 19 C -0.295 4.295 20 C -0.102 4.102 21 N -0.093 5.093 22 N -0.164 5.164 23 C 0.003 3.997 24 C -0.109 4.109 25 C -0.172 4.172 26 C 0.005 3.995 27 C -0.122 4.122 28 C -0.125 4.125 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.235 0.765 38 H 0.213 0.787 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.137 0.863 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.790 -34.820 -0.156 35.026 hybrid contribution 0.160 1.741 0.026 1.749 sum -3.630 -33.078 -0.130 33.277 Atomic orbital electron populations 1.69686 1.05133 1.25586 1.57503 1.24759 0.95534 0.97715 1.02872 0.86100 0.78767 0.84010 0.77197 1.20513 1.21836 1.21841 1.19292 0.91103 0.83968 1.42974 0.91004 1.42344 1.05959 0.99298 1.89507 1.19708 0.91892 0.83964 0.98726 1.20387 0.97222 0.96092 0.92817 1.21117 0.97309 0.95894 0.98190 1.20993 0.97374 0.96700 0.97115 1.19690 1.00346 0.98623 0.93801 1.20135 0.92554 0.79761 1.02938 1.45871 1.10376 1.05094 1.75866 1.17223 0.86553 0.82475 0.75588 1.90762 1.13333 1.87639 1.51259 1.19468 0.92942 0.92145 1.24922 1.24126 0.94649 0.94151 0.97292 1.77183 1.02166 1.04631 1.25297 1.50148 1.04136 1.07295 1.54776 1.22565 0.91885 0.90434 0.94776 1.21011 0.92315 0.92659 1.04902 1.22883 0.93469 0.97310 1.03553 1.22485 0.94664 0.78415 1.03944 1.20993 0.97348 0.96725 0.97110 1.21120 0.97265 0.95933 0.98198 0.93514 0.78045 0.95396 0.95404 0.85850 0.86307 0.90723 0.90726 0.76546 0.78669 0.87560 0.87874 0.89136 0.87564 0.88821 0.88533 0.86308 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -18.62 5.59 -61.09 -0.34 -18.96 16 10 C 0.18 3.74 6.38 -5.20 -0.03 3.70 16 11 C -0.06 -1.10 5.25 -104.62 -0.55 -1.65 16 12 C -0.11 -1.64 9.70 -39.59 -0.38 -2.03 16 13 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 14 C -0.12 -1.53 5.25 -104.62 -0.55 -2.08 16 15 C 0.17 1.90 5.80 -5.20 -0.03 1.87 16 16 N -0.72 -7.37 5.54 -62.56 -0.35 -7.72 16 17 C 0.59 7.12 7.81 -12.52 -0.10 7.02 16 18 O -0.55 -8.26 16.90 5.27 0.09 -8.17 16 19 C -0.28 -2.96 6.13 -105.04 -0.64 -3.60 16 20 C 0.09 0.80 11.50 -17.08 -0.20 0.60 16 21 N -0.27 -2.92 12.63 30.82 0.39 -2.53 16 22 N -0.38 -3.38 4.82 -55.09 -0.27 -3.65 16 23 C 0.14 1.28 7.31 -81.22 -0.59 0.69 16 24 C -0.07 -0.40 6.86 -26.72 -0.18 -0.58 16 25 C -0.13 -0.32 7.18 -25.19 -0.18 -0.50 16 26 C 0.13 0.52 7.77 -2.91 -0.02 0.50 16 27 C -0.10 -1.35 9.70 -39.59 -0.38 -1.74 16 28 C -0.11 -1.64 9.70 -39.58 -0.38 -2.03 16 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.39 10.56 7.66 -40.82 -0.31 10.25 16 31 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 36 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.40 3.31 7.42 -40.82 -0.30 3.01 16 38 H 0.20 1.18 7.50 -52.49 -0.39 0.78 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.11 0.00 8.14 -51.93 -0.42 -0.43 16 43 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -36.17 393.10 -10.18 -46.35 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.46 Total: 8.04 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -4.86 Total: -9.00 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.16 Total: -60.55 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.17 -10.18 -46.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715194566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.559 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds