Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86794 * 120.00113 * 2 1 4 4 H 1.48506 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47368 * 299.99576 * 3 2 1 6 6 H 1.48497 * 109.47590 * 59.99776 * 3 2 1 7 7 C 1.38808 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00522 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00195 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47031 * 180.02562 * 10 9 7 12 12 C 1.38237 * 120.00122 * 90.00172 * 11 10 9 13 13 C 1.38228 * 120.00072 * 179.97438 * 12 11 10 14 14 C 1.38241 * 120.00180 * 0.02713 * 13 12 11 15 15 C 1.50702 * 120.00003 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.46998 * 89.99592 * 15 14 13 17 17 C 1.34778 * 119.99896 * 179.97438 * 16 15 14 18 18 O 1.21611 * 120.00097 * 0.02562 * 17 16 15 19 19 C 1.47428 * 120.00234 * 179.97438 * 17 16 15 20 20 C 1.41204 * 126.43890 * 359.96394 * 19 17 16 21 21 N 1.30286 * 108.02960 * 179.97438 * 20 19 17 22 22 N 1.40385 * 109.08575 * 359.94881 * 21 20 19 23 23 C 1.34213 * 108.13290 * 0.18006 * 22 21 20 24 24 C 1.51388 * 110.37341 * 179.76103 * 23 22 21 25 25 C 1.54565 * 104.14194 * 343.53699 * 24 23 22 26 26 C 1.47252 * 140.96089 * 180.32447 * 22 21 20 27 27 C 1.38233 * 119.99692 * 0.24874 * 14 13 12 28 28 C 1.38231 * 120.00260 * 359.49562 * 27 14 13 29 29 H 0.97004 * 119.99803 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99669 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47348 * 60.00409 * 10 9 7 32 32 H 1.09000 * 109.47388 * 300.00168 * 10 9 7 33 33 H 1.08001 * 119.99732 * 0.02562 * 12 11 10 34 34 H 1.07999 * 120.00126 * 180.02562 * 13 12 11 35 35 H 1.09005 * 109.46880 * 329.99847 * 15 14 13 36 36 H 1.09000 * 109.46784 * 209.99798 * 15 14 13 37 37 H 0.96999 * 120.00740 * 0.02562 * 16 15 14 38 38 H 1.08002 * 125.98388 * 359.92200 * 20 19 17 39 39 H 1.08997 * 110.49778 * 224.86504 * 24 23 22 40 40 H 1.09000 * 110.49275 * 102.19491 * 24 23 22 41 41 H 1.09007 * 110.98862 * 266.93911 * 25 24 23 42 42 H 1.08998 * 111.02563 * 143.13651 * 25 24 23 43 43 H 1.09002 * 110.23109 * 77.92867 * 26 22 21 44 44 H 1.09000 * 110.22779 * 316.05728 * 26 22 21 45 45 H 1.07998 * 119.99899 * 179.72835 * 27 14 13 46 46 H 1.07997 * 120.00360 * 180.25232 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0785 -4.8022 -0.0001 12 6 0.6298 -5.3273 -1.1975 13 6 -0.2680 -6.3783 -1.1981 14 6 -0.7178 -6.9039 -0.0012 15 6 -1.6971 -8.0493 -0.0019 16 7 -0.9647 -9.3180 -0.0019 17 6 -1.6386 -10.4852 -0.0019 18 8 -2.8547 -10.4851 -0.0024 19 6 -0.9015 -11.7620 -0.0026 20 6 0.5016 -11.9204 -0.0038 21 7 0.7633 -13.1967 -0.0035 22 7 -0.4442 -13.9129 -0.0007 23 6 -1.4541 -13.0289 -0.0035 24 6 -2.7854 -13.7497 -0.0066 25 6 -2.4321 -15.1936 -0.4301 26 6 -0.9548 -15.2940 0.0064 27 6 -0.2735 -6.3750 1.1962 28 6 0.6285 -5.3275 1.1968 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6845 -3.7146 0.8906 32 1 2.6846 -3.7146 -0.8894 33 1 0.9815 -4.9169 -2.1326 34 1 -0.6183 -6.7888 -2.1336 35 1 -2.3234 -7.9913 -0.8922 36 1 -2.3241 -7.9917 0.8879 37 1 0.0053 -9.3181 -0.0012 38 1 1.2302 -11.1232 -0.0058 39 1 -3.4638 -13.2953 -0.7286 40 1 -3.2261 -13.7415 0.9903 41 1 -2.5299 -15.3192 -1.5085 42 1 -3.0468 -15.9190 0.1028 43 1 -0.8859 -15.7162 1.0090 44 1 -0.3940 -15.9068 -0.6993 45 1 -0.6281 -6.7827 2.1312 46 1 0.9787 -4.9170 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715194566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 62.029088 kcal Electronic energy + Delta-G solvation = -27191.181728 eV Core-core repulsion = 23274.677829 eV Total energy + Delta-G solvation = -3916.503899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85358 -40.73780 -39.89928 -37.30312 -36.90214 -35.67906 -33.72789 -32.32806 -31.82284 -31.55632 -30.43756 -28.96377 -27.74592 -25.91856 -24.20446 -23.59414 -23.44768 -22.86183 -21.70884 -21.42160 -20.67743 -19.32204 -18.71109 -17.51766 -17.17946 -16.81721 -16.69001 -16.44481 -16.07616 -15.80466 -15.59656 -15.42628 -15.23910 -15.03876 -14.84455 -14.63088 -14.31178 -14.30574 -14.16202 -13.93216 -13.67184 -13.33299 -13.08156 -13.01411 -12.96669 -12.79454 -12.50969 -12.14324 -12.11718 -12.02515 -11.92828 -11.88129 -11.70682 -11.00183 -10.99384 -10.36407 -10.16474 -9.79300 -9.62289 -9.61568 -9.02740 -7.95564 -5.25814 0.27442 0.47444 0.53635 1.10233 1.22314 1.48072 1.48965 1.59313 2.30392 2.44157 2.56403 2.93254 3.06703 3.37859 3.47465 3.64029 3.70702 3.89224 3.93178 3.97569 4.07160 4.13726 4.16806 4.25494 4.32997 4.35535 4.48623 4.53559 4.59345 4.66195 4.73263 4.81546 4.88381 4.91531 4.92267 4.99229 5.07641 5.10252 5.22769 5.36212 5.44212 5.48172 5.49307 5.63646 5.65820 5.83753 6.09207 6.25349 6.51962 6.66415 7.29490 7.32001 8.05185 8.30271 9.27928 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036275 B = 0.001606 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.706282 B =17425.945144 C =17864.090132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.079 0.921 9 N -0.739 5.739 10 C 0.185 3.815 11 C -0.087 4.087 12 C -0.116 4.116 13 C -0.098 4.098 14 C -0.108 4.108 15 C 0.175 3.825 16 N -0.711 5.711 17 C 0.595 3.405 18 O -0.587 6.587 19 C -0.309 4.309 20 C 0.090 3.910 21 N -0.308 5.308 22 N -0.386 5.386 23 C 0.128 3.872 24 C -0.074 4.074 25 C -0.117 4.117 26 C 0.112 3.888 27 C -0.098 4.098 28 C -0.116 4.116 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.121 0.879 34 H 0.141 0.859 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.220 0.780 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.139 0.861 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.141 0.859 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 -36.025 -0.122 36.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.382 5.382 10 C 0.059 3.941 11 C -0.088 4.088 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.109 4.109 15 C 0.052 3.948 16 N -0.362 5.362 17 C 0.384 3.616 18 O -0.469 6.469 19 C -0.324 4.324 20 C -0.098 4.098 21 N -0.127 5.127 22 N -0.165 5.165 23 C -0.007 4.007 24 C -0.113 4.113 25 C -0.155 4.155 26 C -0.006 4.006 27 C -0.116 4.116 28 C -0.134 4.134 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.236 0.764 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.157 0.843 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.159 0.841 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.640 -37.033 -0.123 37.212 hybrid contribution 0.127 2.241 0.020 2.245 sum -3.514 -34.792 -0.103 34.969 Atomic orbital electron populations 1.69845 1.06730 1.26063 1.59336 1.25607 0.96406 1.01200 1.03486 0.85030 0.78258 0.79517 0.76664 1.18864 1.21991 1.22002 1.19721 0.91640 0.85147 1.41459 0.90339 1.42546 1.05557 1.00631 1.89437 1.19771 0.92486 0.83210 0.98598 1.20166 0.98224 0.96134 0.94271 1.21166 0.98034 0.96711 0.97518 1.21194 0.96282 0.95687 0.98421 1.19789 0.99469 0.98290 0.93337 1.20032 0.92165 0.79622 1.03010 1.45722 1.10864 1.04362 1.75249 1.17415 0.86155 0.83141 0.74843 1.90735 1.14809 1.88131 1.53182 1.19530 0.93626 0.92089 1.27121 1.24506 0.94665 0.94429 0.96153 1.77087 1.03745 1.05311 1.26509 1.50561 1.03437 1.08744 1.53762 1.23182 0.93589 0.90481 0.93460 1.21180 0.90535 0.94260 1.05284 1.22933 0.92477 0.95707 1.04377 1.22945 0.95673 0.76589 1.05425 1.21194 0.96262 0.95717 0.98417 1.21168 0.97990 0.96744 0.97526 0.93980 0.79502 0.95154 0.95163 0.86056 0.84074 0.90736 0.90736 0.75286 0.76381 0.88231 0.87095 0.88505 0.84332 0.87219 0.87361 0.84077 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 3 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.74 -38.53 5.59 -347.18 -1.94 -40.47 16 10 C 0.19 7.60 6.38 85.63 0.55 8.15 16 11 C -0.09 -2.99 5.25 -19.86 -0.10 -3.09 16 12 C -0.12 -3.51 9.70 22.27 0.22 -3.29 16 13 C -0.10 -2.40 9.70 22.27 0.22 -2.18 16 14 C -0.11 -2.48 5.25 -19.86 -0.10 -2.58 16 15 C 0.17 3.64 5.80 85.63 0.50 4.13 16 16 N -0.71 -13.48 5.54 -470.10 -2.60 -16.09 16 17 C 0.60 13.84 7.81 86.66 0.68 14.52 16 18 O -0.59 -17.42 16.90 -4.07 -0.07 -17.48 16 19 C -0.31 -6.33 6.13 -20.13 -0.12 -6.45 16 20 C 0.09 1.59 11.50 85.65 0.98 2.58 16 21 N -0.31 -6.31 12.63 -56.42 -0.71 -7.02 16 22 N -0.39 -6.32 4.82 -328.20 -1.58 -7.90 16 23 C 0.13 2.28 7.31 42.41 0.31 2.59 16 24 C -0.07 -0.74 6.86 30.60 0.21 -0.53 16 25 C -0.12 -0.25 7.18 31.59 0.23 -0.02 16 26 C 0.11 0.69 7.77 86.70 0.67 1.36 16 27 C -0.10 -2.40 9.70 22.27 0.22 -2.18 16 28 C -0.12 -3.51 9.70 22.27 0.22 -3.29 16 29 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 30 H 0.37 20.99 7.66 -92.71 -0.71 20.28 16 31 H 0.03 1.23 8.09 -2.38 -0.02 1.21 16 32 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.12 3.65 8.06 -2.91 -0.02 3.62 16 34 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.07 1.61 8.09 -2.38 -0.02 1.59 16 36 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 37 H 0.41 6.04 7.42 -92.71 -0.69 5.36 16 38 H 0.22 2.34 7.50 -2.91 -0.02 2.32 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 0.12 8.14 -2.38 -0.02 0.10 16 42 H 0.14 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 46 H 0.12 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -79.06 393.10 0.99 -78.08 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.38 Total: 29.77 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.96 Total: -7.38 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -6.56 Total: -131.46 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.07 Total: -17.48 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -79.06 0.99 -78.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715194566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.105 kcal (2) G-P(sol) polarization free energy of solvation -79.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds