Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47484 * 270.00427 * 3 2 1 5 5 H 1.48499 * 109.47074 * 30.00802 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.38814 * 119.99461 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00514 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99592 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99947 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46849 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47070 * 65.00067 * 11 10 9 13 13 N 1.46505 * 109.47411 * 304.99988 * 11 10 9 14 14 C 1.34769 * 119.99798 * 155.00053 * 13 11 10 15 15 O 1.21580 * 120.00601 * 0.02562 * 14 13 11 16 16 C 1.47674 * 119.99578 * 180.02562 * 14 13 11 17 17 C 1.41533 * 126.44129 * 179.71915 * 16 14 13 18 18 C 1.35349 * 105.55859 * 179.87604 * 17 16 14 19 19 N 1.35863 * 107.12391 * 0.37637 * 18 17 16 20 20 C 1.40116 * 124.96262 * 179.71409 * 19 18 17 21 21 C 1.38854 * 120.06401 * 359.74108 * 20 19 18 22 22 C 1.38122 * 119.92828 * 179.72064 * 21 20 19 23 23 C 1.38282 * 120.06430 * 0.55171 * 22 21 20 24 24 C 1.38280 * 120.14201 * 359.72152 * 23 22 21 25 25 C 1.38119 * 120.06458 * 0.02562 * 24 23 22 26 26 N 1.28478 * 110.07857 * 359.74886 * 19 18 17 27 27 C 1.52997 * 109.46817 * 184.99887 * 11 10 9 28 28 C 1.53001 * 117.50135 * 248.74637 * 27 11 10 29 29 C 1.53000 * 117.49905 * 180.08647 * 27 11 10 30 30 H 0.97002 * 119.99794 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99941 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47122 * 60.00266 * 10 9 7 33 33 H 1.08997 * 109.46807 * 299.99862 * 10 9 7 34 34 H 0.97005 * 119.99239 * 335.00029 * 13 11 10 35 35 H 1.08003 * 127.22080 * 0.02562 * 17 16 14 36 36 H 1.07994 * 126.43922 * 180.08718 * 18 17 16 37 37 H 1.07999 * 120.03611 * 359.97438 * 21 20 19 38 38 H 1.07994 * 119.96812 * 180.30015 * 22 21 20 39 39 H 1.08009 * 119.92753 * 179.74653 * 23 22 21 40 40 H 1.07997 * 119.97039 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.03095 * 180.02562 * 25 24 23 42 42 H 1.09006 * 115.55153 * 34.42016 * 27 11 10 43 43 H 1.09002 * 117.49734 * 0.02562 * 28 27 11 44 44 H 1.08994 * 117.49847 * 145.02044 * 28 27 11 45 45 H 1.09001 * 117.49936 * 214.98052 * 29 27 11 46 46 H 1.08999 * 117.50086 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6525 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0022 11 6 5.6163 -2.1914 -0.0020 12 1 5.8941 -1.6989 0.9299 13 7 5.9517 -1.3223 -1.1326 14 6 7.0496 -0.5424 -1.0805 15 8 7.7620 -0.5604 -0.0954 16 6 7.3873 0.3341 -2.2200 17 6 8.4972 1.2078 -2.3084 18 6 8.3992 1.7976 -3.5228 19 7 7.2824 1.3036 -4.1183 20 6 6.8230 1.6680 -5.3909 21 6 7.5219 2.6047 -6.1408 22 6 7.0697 2.9576 -7.3973 23 6 5.9161 2.3876 -7.9038 24 6 5.2148 1.4588 -7.1571 25 6 5.6648 1.0979 -5.9021 26 7 6.7086 0.4540 -3.3440 27 6 6.3802 -3.5110 -0.1288 28 6 7.1793 -3.9844 1.0870 29 6 7.9086 -3.4436 -0.1454 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0007 32 1 3.8484 -3.0420 -0.8925 33 1 3.8490 -3.0431 0.8875 34 1 5.3835 -1.3082 -1.9187 35 1 9.2633 1.3684 -1.5642 36 1 9.0782 2.5274 -3.9381 37 1 8.4203 3.0537 -5.7438 38 1 7.6154 3.6824 -7.9831 39 1 5.5623 2.6683 -8.8850 40 1 4.3144 1.0151 -7.5555 41 1 5.1169 0.3721 -5.3195 42 1 5.9033 -4.2729 -0.7455 43 1 7.1604 -3.3560 1.9774 44 1 7.2284 -5.0578 1.2700 45 1 8.4373 -4.1615 -0.7725 46 1 8.3700 -2.4592 -0.0663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716615743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = 101.444552 kcal Electronic energy + Delta-G solvation = -28915.273366 eV Core-core repulsion = 25000.478649 eV Total energy + Delta-G solvation = -3914.794717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.00237 -41.06669 -40.00796 -38.44977 -36.79211 -35.14753 -34.65424 -33.38209 -32.57249 -31.50561 -30.74203 -29.75884 -26.22452 -25.33861 -24.35245 -23.34752 -23.06762 -22.86136 -21.92513 -21.47024 -21.13876 -19.92134 -19.53588 -18.25465 -17.53086 -17.34230 -17.12245 -16.75760 -16.47374 -16.11425 -15.98175 -15.68908 -15.29248 -15.03420 -14.82235 -14.79880 -14.65282 -14.53363 -14.14632 -13.86422 -13.78400 -13.57468 -12.99322 -12.77330 -12.65060 -12.62809 -12.33906 -12.29337 -12.17818 -11.92069 -11.89339 -11.46987 -11.24702 -11.18549 -11.08543 -10.97788 -10.39861 -10.09252 -10.07588 -9.37248 -9.32575 -8.09066 -5.41260 -0.34141 0.27753 0.64162 1.22737 1.27759 1.28351 1.29230 1.35458 2.03690 2.25162 2.38860 2.73007 2.96880 3.17950 3.23334 3.38684 3.68023 3.73771 3.81171 3.89708 3.99464 4.04153 4.13049 4.17941 4.23878 4.36600 4.37603 4.40557 4.54452 4.57334 4.62259 4.64236 4.81787 4.84750 4.97076 5.02221 5.04292 5.12411 5.23858 5.27569 5.32106 5.34274 5.46088 5.48155 5.67499 5.70839 5.98813 6.15151 6.35949 6.74325 7.00237 7.07595 7.76024 7.93966 9.12442 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007810 B = 0.004075 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.482342 B = 6869.039480 C = 9227.796692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.050 4.050 3 Si 0.941 3.059 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.229 4.229 8 H 0.068 0.932 9 N -0.758 5.758 10 C 0.153 3.847 11 C 0.174 3.826 12 H 0.073 0.927 13 N -0.698 5.698 14 C 0.603 3.397 15 O -0.555 6.555 16 C -0.033 4.033 17 C -0.183 4.183 18 C -0.002 4.002 19 N -0.235 5.235 20 C 0.102 3.898 21 C -0.123 4.123 22 C -0.093 4.093 23 C -0.114 4.114 24 C -0.107 4.107 25 C -0.135 4.135 26 N -0.282 5.282 27 C -0.169 4.169 28 C -0.157 4.157 29 C -0.183 4.183 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.409 0.591 35 H 0.181 0.819 36 H 0.233 0.767 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.428 3.892 -16.991 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.243 4.243 3 Si 0.770 3.230 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.360 4.360 8 H 0.086 0.914 9 N -0.404 5.404 10 C 0.027 3.973 11 C 0.070 3.930 12 H 0.091 0.909 13 N -0.348 5.348 14 C 0.388 3.612 15 O -0.433 6.433 16 C -0.193 4.193 17 C -0.211 4.211 18 C -0.141 4.141 19 N -0.017 5.017 20 C 0.012 3.988 21 C -0.143 4.143 22 C -0.111 4.111 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.155 4.155 26 N -0.116 5.116 27 C -0.189 4.189 28 C -0.195 4.195 29 C -0.220 4.220 30 H 0.068 0.932 31 H 0.194 0.806 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.244 0.756 35 H 0.198 0.802 36 H 0.250 0.750 37 H 0.180 0.820 38 H 0.189 0.811 39 H 0.178 0.822 40 H 0.164 0.836 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.106 0.894 44 H 0.134 0.866 45 H 0.120 0.880 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.735 3.371 -16.858 27.712 hybrid contribution 0.081 1.119 0.508 1.232 sum 21.816 4.491 -16.350 27.631 Atomic orbital electron populations 1.69837 1.06604 1.26490 1.59791 1.25260 0.95868 1.00209 1.02926 0.85618 0.78257 0.81330 0.77756 1.20949 1.21621 1.19568 1.19068 0.82293 0.93753 1.40838 0.91367 1.42731 1.02750 1.03878 1.91017 1.21052 0.88096 0.87890 1.00295 1.20741 0.93802 0.89439 0.89025 0.90915 1.45924 1.26055 1.41886 1.20907 1.17040 0.80715 0.78610 0.84823 1.90683 1.51552 1.68133 1.32908 1.22125 0.98636 1.04290 0.94255 1.22098 1.00528 0.99375 0.99060 1.23705 0.92406 1.03908 0.94120 1.43026 1.18129 1.28139 1.12393 1.18100 0.97670 1.00807 0.82207 1.21249 1.01216 0.96494 0.95373 1.21488 0.96214 0.99408 0.94013 1.21745 0.94953 0.95365 1.01199 1.21383 1.00680 0.97748 0.92722 1.21106 0.95498 1.01199 0.97702 1.73526 1.23803 1.11390 1.02911 1.22538 0.93958 0.97846 1.04562 1.23001 1.02557 1.02069 0.91838 1.23202 0.93383 1.03585 1.01830 0.93234 0.80562 0.93832 0.93156 0.75565 0.80155 0.75024 0.82044 0.81130 0.82229 0.83633 0.86512 0.86264 0.89416 0.86552 0.88017 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.32 13.97 21.65 0.30 -63.02 16 2 C -0.05 -3.05 5.50 84.86 0.47 -2.59 16 3 Si 0.94 48.66 27.73 68.60 1.90 50.56 16 4 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 5 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 6 H -0.27 -13.46 6.52 99.48 0.65 -12.81 16 7 C -0.23 -13.28 10.47 84.03 0.88 -12.40 16 8 H 0.07 4.23 8.06 -2.91 -0.02 4.21 16 9 N -0.76 -36.92 5.24 -343.45 -1.80 -38.72 16 10 C 0.15 5.93 5.80 86.38 0.50 6.43 16 11 C 0.17 5.91 2.43 44.99 0.11 6.02 16 12 H 0.07 2.74 7.33 -2.39 -0.02 2.72 16 13 N -0.70 -24.18 4.50 -445.56 -2.00 -26.18 16 14 C 0.60 21.33 7.16 86.74 0.62 21.96 16 15 O -0.55 -21.17 13.94 -3.97 -0.06 -21.23 16 16 C -0.03 -1.06 7.13 42.45 0.30 -0.76 16 17 C -0.18 -4.58 10.80 22.42 0.24 -4.33 16 18 C 0.00 -0.04 10.78 83.40 0.90 0.86 16 19 N -0.23 -5.96 3.52 -187.31 -0.66 -6.61 16 20 C 0.10 2.20 6.66 38.11 0.25 2.45 16 21 C -0.12 -1.61 9.43 22.39 0.21 -1.40 16 22 C -0.09 -0.87 10.04 22.25 0.22 -0.64 16 23 C -0.11 -1.26 10.04 22.29 0.22 -1.04 16 24 C -0.11 -1.78 10.04 22.25 0.22 -1.55 16 25 C -0.14 -3.13 9.59 22.39 0.21 -2.91 16 26 N -0.28 -8.97 10.85 -48.16 -0.52 -9.49 16 27 C -0.17 -4.67 5.36 -10.79 -0.06 -4.73 16 28 C -0.16 -3.84 10.18 30.62 0.31 -3.53 16 29 C -0.18 -4.87 9.74 30.62 0.30 -4.58 16 30 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 31 H 0.36 17.80 5.20 -92.71 -0.48 17.31 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 34 H 0.41 14.34 8.32 -92.70 -0.77 13.57 16 35 H 0.18 3.83 8.06 -2.91 -0.02 3.80 16 36 H 0.23 1.89 6.96 -2.91 -0.02 1.87 16 37 H 0.16 1.05 6.65 -2.91 -0.02 1.03 16 38 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 39 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 40 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.12 3.22 7.65 -2.91 -0.02 3.20 16 42 H 0.12 2.98 8.11 -2.38 -0.02 2.96 16 43 H 0.09 2.28 8.05 -2.39 -0.02 2.26 16 44 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 46 H 0.10 3.03 5.02 -2.39 -0.01 3.02 16 Total: -1.00 -78.66 386.08 2.80 -75.85 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.29 Total: 41.60 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.92 Total: -2.75 kcal Atomic # 7 Polarization: -139.35 SS G_CDS: -4.68 Total: -144.03 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.06 Total: -21.23 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 1.90 Total: 50.56 kcal Total: -78.66 2.80 -75.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716615743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.296 kcal (2) G-P(sol) polarization free energy of solvation -78.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds