Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99453 * 3 2 1 5 5 H 1.48505 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99374 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47756 * 294.99812 * 11 10 9 13 13 N 1.46497 * 109.47333 * 55.00709 * 11 10 9 14 14 C 1.34779 * 120.00134 * 204.99712 * 13 11 10 15 15 O 1.21624 * 119.99890 * 359.97438 * 14 13 11 16 16 C 1.47310 * 120.00055 * 179.97438 * 14 13 11 17 17 C 1.36449 * 126.18735 * 180.02562 * 16 14 13 18 18 N 1.36135 * 106.76059 * 179.97438 * 17 16 14 19 19 C 1.40220 * 126.21669 * 180.02562 * 18 17 16 20 20 C 1.38822 * 120.06310 * 359.72793 * 19 18 17 21 21 C 1.38129 * 119.93158 * 179.74308 * 20 19 18 22 22 C 1.38272 * 120.06411 * 0.51085 * 21 20 19 23 23 C 1.38272 * 120.13143 * 359.76654 * 22 21 20 24 24 C 1.38129 * 120.06959 * 359.97438 * 23 22 21 25 25 C 1.36111 * 107.56899 * 0.02562 * 18 17 16 26 26 N 1.30158 * 109.00404 * 359.74193 * 25 18 17 27 27 C 1.53009 * 109.46984 * 175.00142 * 11 10 9 28 28 C 1.52996 * 117.49844 * 248.75159 * 27 11 10 29 29 C 1.52999 * 117.50079 * 180.08843 * 27 11 10 30 30 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 32 32 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 33 33 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 34 34 H 0.97001 * 120.00330 * 24.98715 * 13 11 10 35 35 H 1.07990 * 126.61965 * 359.97438 * 17 16 14 36 36 H 1.08001 * 120.03548 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.96440 * 180.25885 * 21 20 19 38 38 H 1.08000 * 119.93448 * 179.74337 * 22 21 20 39 39 H 1.08006 * 119.96891 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.03575 * 180.02562 * 24 23 22 41 41 H 1.07998 * 125.50034 * 179.97438 * 25 18 17 42 42 H 1.09000 * 115.54486 * 34.41403 * 27 11 10 43 43 H 1.08994 * 117.50040 * 359.97438 * 28 27 11 44 44 H 1.08998 * 117.50004 * 145.02314 * 28 27 11 45 45 H 1.08998 * 117.49656 * 214.97947 * 29 27 11 46 46 H 1.09001 * 117.49398 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 1 0.4972 -4.8139 0.9310 13 7 0.1449 -4.6758 -1.1319 14 6 -1.0796 -5.2367 -1.0813 15 8 -1.4215 -5.8626 -0.0961 16 6 -2.0039 -5.0916 -2.2191 17 6 -3.2659 -5.6036 -2.3023 18 7 -3.7606 -5.2335 -3.5154 19 6 -5.0307 -5.5439 -4.0219 20 6 -5.9145 -6.3021 -3.2662 21 6 -7.1670 -6.6017 -3.7655 22 6 -7.5370 -6.1561 -5.0211 23 6 -6.6566 -5.4056 -5.7785 24 6 -5.4047 -5.0982 -5.2823 25 6 -2.7982 -4.5075 -4.1474 26 7 -1.7560 -4.4199 -3.3726 27 6 1.8247 -6.1412 -0.1258 28 6 1.6673 -6.9257 -1.4298 29 6 1.0019 -7.4309 -0.1471 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0039 32 1 2.6848 -3.7145 -0.8894 33 1 2.6847 -3.7144 0.8906 34 1 0.4176 -4.1768 -1.9178 35 1 -3.7742 -6.1894 -1.5509 36 1 -5.6248 -6.6535 -2.2869 37 1 -7.8566 -7.1881 -3.1763 38 1 -8.5153 -6.3951 -5.4112 39 1 -6.9482 -5.0592 -6.7591 40 1 -4.7177 -4.5116 -5.8741 41 1 -2.8865 -4.0711 -5.1313 42 1 2.7969 -6.1724 0.3661 43 1 1.0213 -6.5007 -2.1980 44 1 2.5357 -7.4736 -1.7956 45 1 1.4329 -8.3108 0.3305 46 1 -0.0815 -7.3379 -0.0712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723302057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = 103.046387 kcal Electronic energy + Delta-G solvation = -28585.950430 eV Core-core repulsion = 24671.225174 eV Total energy + Delta-G solvation = -3914.725256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.56312 -39.80204 -39.27002 -36.90672 -34.79383 -34.43348 -33.07624 -31.73271 -31.07887 -30.03302 -29.56393 -27.97976 -24.46203 -23.82610 -23.79405 -22.24748 -22.12649 -21.37766 -21.08332 -19.97648 -19.44318 -18.95338 -17.24196 -16.85629 -16.16416 -16.00880 -15.86704 -15.59338 -15.28769 -15.13213 -14.58072 -14.38891 -14.16835 -13.90962 -13.73731 -13.53210 -13.36185 -13.11503 -13.07166 -12.73877 -12.19774 -11.96922 -11.60901 -11.54625 -11.26278 -11.13306 -10.87437 -10.81216 -10.73950 -10.37756 -10.17186 -10.04319 -9.71737 -9.63904 -9.54689 -9.46676 -9.00951 -8.82981 -8.63317 -8.42283 -6.86951 -5.69140 -2.98720 0.43444 0.80405 1.77401 2.29564 2.43159 3.31287 3.48385 3.52318 3.53615 3.58088 3.76790 4.16144 4.17731 4.28601 4.38041 4.49564 4.63453 4.65337 4.79074 4.83949 5.01636 5.11432 5.21833 5.28118 5.31124 5.32347 5.42886 5.52172 5.62791 5.69325 5.83332 5.87673 5.95924 5.96578 6.04002 6.11428 6.12638 6.23834 6.34767 6.37842 6.44415 6.59330 6.61962 6.79891 6.92497 7.06113 7.62292 7.75059 8.07213 8.48201 8.64060 9.59848 10.16824 10.52285 11.53025 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010183 B = 0.002911 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.920833 B = 9615.421777 C =11689.440997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.092 0.908 13 N -0.690 5.690 14 C 0.604 3.396 15 O -0.548 6.548 16 C -0.040 4.040 17 C 0.027 3.973 18 N -0.412 5.412 19 C 0.136 3.864 20 C -0.132 4.132 21 C -0.092 4.092 22 C -0.128 4.128 23 C -0.092 4.092 24 C -0.132 4.132 25 C 0.193 3.807 26 N -0.444 5.444 27 C -0.159 4.159 28 C -0.178 4.178 29 C -0.188 4.188 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.026 0.974 33 H 0.035 0.965 34 H 0.413 0.587 35 H 0.190 0.810 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.214 0.786 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 -17.075 -12.233 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.110 0.890 13 N -0.339 5.339 14 C 0.390 3.610 15 O -0.427 6.427 16 C -0.168 4.168 17 C -0.107 4.107 18 N -0.090 5.090 19 C 0.044 3.956 20 C -0.152 4.152 21 C -0.110 4.110 22 C -0.147 4.147 23 C -0.111 4.111 24 C -0.152 4.152 25 C -0.089 4.089 26 N -0.162 5.162 27 C -0.179 4.179 28 C -0.215 4.215 29 C -0.224 4.224 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.250 0.750 35 H 0.207 0.793 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.230 0.770 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.935 -16.953 -11.687 24.317 hybrid contribution -0.394 0.922 -0.266 1.037 sum -13.329 -16.031 -11.952 24.032 Atomic orbital electron populations 1.69672 1.05077 1.25623 1.57446 1.24746 0.95481 0.97637 1.02992 0.86271 0.78479 0.83632 0.77787 1.21307 1.21789 1.21323 1.19160 0.90954 0.84081 1.42979 0.91209 1.42339 1.06035 0.99681 1.89497 1.20909 0.93037 0.85125 0.98920 1.20790 0.90203 0.92891 0.89849 0.89036 1.45770 1.13811 1.53444 1.20924 1.16786 0.81026 0.78738 0.84494 1.90705 1.76528 1.42919 1.32526 1.20715 0.95007 1.05169 0.95897 1.22672 0.95644 1.03755 0.88677 1.43099 1.11691 1.39858 1.14390 1.17892 0.83839 0.99340 0.94571 1.20983 0.94040 0.99642 1.00554 1.21072 0.95298 0.98845 0.95835 1.21277 1.00141 0.98532 0.94734 1.21056 0.92660 0.97286 1.00085 1.20888 0.98156 1.02146 0.93985 1.25299 0.83951 0.98966 1.00697 1.70705 1.25094 1.18153 1.02216 1.22693 1.00733 0.92458 1.02031 1.22899 1.02919 1.03960 0.91719 1.23334 1.01556 0.96706 1.00836 0.93559 0.77938 0.95610 0.94780 0.75002 0.79280 0.84857 0.84889 0.85302 0.84850 0.84808 0.76978 0.87264 0.88882 0.89606 0.89835 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.98 5.44 -59.90 -0.33 -19.31 16 10 C 0.15 3.06 5.80 -4.04 -0.02 3.04 16 11 C 0.17 3.05 2.59 -67.93 -0.18 2.87 16 12 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 13 N -0.69 -12.59 3.05 -54.91 -0.17 -12.76 16 14 C 0.60 11.05 6.65 -12.57 -0.08 10.97 16 15 O -0.55 -10.74 13.90 5.26 0.07 -10.67 16 16 C -0.04 -0.67 6.97 -83.09 -0.58 -1.25 16 17 C 0.03 0.36 10.57 -16.29 -0.17 0.19 16 18 N -0.41 -4.78 2.97 -61.91 -0.18 -4.97 16 19 C 0.14 1.28 6.63 -83.59 -0.55 0.72 16 20 C -0.13 -1.08 9.46 -39.41 -0.37 -1.45 16 21 C -0.09 -0.58 10.04 -39.61 -0.40 -0.98 16 22 C -0.13 -0.72 10.04 -39.56 -0.40 -1.12 16 23 C -0.09 -0.54 10.04 -39.61 -0.40 -0.94 16 24 C -0.13 -0.97 9.46 -39.41 -0.37 -1.35 16 25 C 0.19 2.37 11.88 -89.67 -1.07 1.30 16 26 N -0.44 -7.10 10.99 -10.97 -0.12 -7.22 16 27 C -0.16 -2.44 5.71 -90.62 -0.52 -2.96 16 28 C -0.18 -2.54 9.74 -26.69 -0.26 -2.80 16 29 C -0.19 -2.77 9.82 -26.69 -0.26 -3.03 16 30 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.39 10.80 7.33 -40.82 -0.30 10.50 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.41 7.82 8.31 -40.82 -0.34 7.48 16 35 H 0.19 2.15 7.11 -52.49 -0.37 1.78 16 36 H 0.13 0.98 6.78 -52.49 -0.36 0.62 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.13 0.44 8.06 -52.49 -0.42 0.01 16 39 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.13 0.75 6.74 -52.49 -0.35 0.40 16 41 H 0.21 1.70 7.03 -52.49 -0.37 1.34 16 42 H 0.11 1.52 8.11 -51.93 -0.42 1.10 16 43 H 0.09 1.43 6.67 -51.93 -0.35 1.08 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.12 1.96 5.01 -51.93 -0.26 1.70 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -34.79 384.73 -11.12 -45.91 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -6.02 Total: 17.80 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -5.88 Total: -4.25 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -0.07 Total: -72.44 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.79 -11.12 -45.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723302057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.957 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds