Wall clock time and date at job start Sat Apr 11 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99453 * 3 2 1 5 5 H 1.48505 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99374 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47756 * 294.99812 * 11 10 9 13 13 N 1.46497 * 109.47333 * 55.00709 * 11 10 9 14 14 C 1.34779 * 120.00134 * 204.99712 * 13 11 10 15 15 O 1.21624 * 119.99890 * 359.97438 * 14 13 11 16 16 C 1.47310 * 120.00055 * 179.97438 * 14 13 11 17 17 C 1.36449 * 126.18735 * 180.02562 * 16 14 13 18 18 N 1.36135 * 106.76059 * 179.97438 * 17 16 14 19 19 C 1.40220 * 126.21669 * 180.02562 * 18 17 16 20 20 C 1.38822 * 120.06310 * 359.72793 * 19 18 17 21 21 C 1.38129 * 119.93158 * 179.74308 * 20 19 18 22 22 C 1.38272 * 120.06411 * 0.51085 * 21 20 19 23 23 C 1.38272 * 120.13143 * 359.76654 * 22 21 20 24 24 C 1.38129 * 120.06959 * 359.97438 * 23 22 21 25 25 C 1.36111 * 107.56899 * 0.02562 * 18 17 16 26 26 N 1.30158 * 109.00404 * 359.74193 * 25 18 17 27 27 C 1.53009 * 109.46984 * 175.00142 * 11 10 9 28 28 C 1.52996 * 117.49844 * 248.75159 * 27 11 10 29 29 C 1.52999 * 117.50079 * 180.08843 * 27 11 10 30 30 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 32 32 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 33 33 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 34 34 H 0.97001 * 120.00330 * 24.98715 * 13 11 10 35 35 H 1.07990 * 126.61965 * 359.97438 * 17 16 14 36 36 H 1.08001 * 120.03548 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.96440 * 180.25885 * 21 20 19 38 38 H 1.08000 * 119.93448 * 179.74337 * 22 21 20 39 39 H 1.08006 * 119.96891 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.03575 * 180.02562 * 24 23 22 41 41 H 1.07998 * 125.50034 * 179.97438 * 25 18 17 42 42 H 1.09000 * 115.54486 * 34.41403 * 27 11 10 43 43 H 1.08994 * 117.50040 * 359.97438 * 28 27 11 44 44 H 1.08998 * 117.50004 * 145.02314 * 28 27 11 45 45 H 1.08998 * 117.49656 * 214.97947 * 29 27 11 46 46 H 1.09001 * 117.49398 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 1 0.4972 -4.8139 0.9310 13 7 0.1449 -4.6758 -1.1319 14 6 -1.0796 -5.2367 -1.0813 15 8 -1.4215 -5.8626 -0.0961 16 6 -2.0039 -5.0916 -2.2191 17 6 -3.2659 -5.6036 -2.3023 18 7 -3.7606 -5.2335 -3.5154 19 6 -5.0307 -5.5439 -4.0219 20 6 -5.9145 -6.3021 -3.2662 21 6 -7.1670 -6.6017 -3.7655 22 6 -7.5370 -6.1561 -5.0211 23 6 -6.6566 -5.4056 -5.7785 24 6 -5.4047 -5.0982 -5.2823 25 6 -2.7982 -4.5075 -4.1474 26 7 -1.7560 -4.4199 -3.3726 27 6 1.8247 -6.1412 -0.1258 28 6 1.6673 -6.9257 -1.4298 29 6 1.0019 -7.4309 -0.1471 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0039 32 1 2.6848 -3.7145 -0.8894 33 1 2.6847 -3.7144 0.8906 34 1 0.4176 -4.1768 -1.9178 35 1 -3.7742 -6.1894 -1.5509 36 1 -5.6248 -6.6535 -2.2869 37 1 -7.8566 -7.1881 -3.1763 38 1 -8.5153 -6.3951 -5.4112 39 1 -6.9482 -5.0592 -6.7591 40 1 -4.7177 -4.5116 -5.8741 41 1 -2.8865 -4.0711 -5.1313 42 1 2.7969 -6.1724 0.3661 43 1 1.0213 -6.5007 -2.1980 44 1 2.5357 -7.4736 -1.7956 45 1 1.4329 -8.3108 0.3305 46 1 -0.0815 -7.3379 -0.0712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723302057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:08 Heat of formation + Delta-G solvation = 83.086200 kcal Electronic energy + Delta-G solvation = -28586.815969 eV Core-core repulsion = 24671.225174 eV Total energy + Delta-G solvation = -3915.590794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.54016 -41.08118 -39.96171 -38.28268 -36.54231 -35.34159 -34.67410 -33.00078 -32.29814 -30.95319 -30.55195 -29.55404 -26.10453 -25.14479 -24.51830 -23.47217 -23.14202 -22.88700 -21.93158 -21.16395 -20.78127 -19.83865 -19.19034 -17.82820 -17.34974 -17.25725 -16.93774 -16.66357 -16.59118 -15.98220 -15.88551 -15.50343 -15.19288 -15.12892 -15.03023 -14.79319 -14.69013 -14.41875 -14.28849 -13.83862 -13.59954 -13.12455 -12.84957 -12.71551 -12.67160 -12.64073 -12.32657 -12.13035 -12.09536 -11.83539 -11.76397 -11.50170 -11.30929 -11.02453 -10.94709 -10.79359 -10.06602 -10.03502 -9.87726 -9.34654 -9.00840 -7.92502 -5.22887 -0.27035 0.30852 0.74147 1.40505 1.45495 1.47160 1.51212 1.56985 2.24869 2.46951 2.56661 2.76888 2.96162 3.27715 3.41082 3.55600 3.62978 3.65737 3.89021 3.96699 4.04714 4.09207 4.12380 4.18915 4.22845 4.35877 4.40838 4.46400 4.50971 4.63217 4.65077 4.75586 4.83433 4.88335 4.97897 5.05615 5.13636 5.16372 5.27105 5.36299 5.39147 5.43433 5.49872 5.50113 5.58551 5.77378 6.10378 6.26806 6.46627 6.74433 7.22437 7.33715 8.07290 8.31638 9.30489 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010183 B = 0.002911 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.920833 B = 9615.421777 C =11689.440997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.176 3.824 12 H 0.066 0.934 13 N -0.690 5.690 14 C 0.600 3.400 15 O -0.570 6.570 16 C -0.079 4.079 17 C 0.036 3.964 18 N -0.402 5.402 19 C 0.100 3.900 20 C -0.146 4.146 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.095 4.095 24 C -0.135 4.135 25 C 0.200 3.800 26 N -0.484 5.484 27 C -0.164 4.164 28 C -0.166 4.166 29 C -0.185 4.185 30 H 0.249 0.751 31 H 0.372 0.628 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.409 0.591 35 H 0.203 0.797 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.252 0.748 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 -17.854 -14.045 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.071 3.929 12 H 0.084 0.916 13 N -0.339 5.339 14 C 0.388 3.612 15 O -0.451 6.451 16 C -0.206 4.206 17 C -0.101 4.101 18 N -0.079 5.079 19 C 0.009 3.991 20 C -0.165 4.165 21 C -0.116 4.116 22 C -0.140 4.140 23 C -0.113 4.113 24 C -0.155 4.155 25 C -0.083 4.083 26 N -0.202 5.202 27 C -0.184 4.184 28 C -0.203 4.203 29 C -0.221 4.221 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.245 0.755 35 H 0.220 0.780 36 H 0.150 0.850 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.267 0.733 42 H 0.148 0.852 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.125 0.875 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.337 -17.772 -13.516 26.008 hybrid contribution -0.423 1.069 0.213 1.169 sum -13.760 -16.703 -13.303 25.403 Atomic orbital electron populations 1.69860 1.06792 1.25960 1.59410 1.25620 0.96336 1.01272 1.03656 0.85161 0.77084 0.78920 0.78252 1.20169 1.22414 1.20338 1.19618 0.91601 0.85084 1.41321 0.90180 1.42526 1.05587 1.01019 1.89493 1.21039 0.93342 0.83849 0.99397 1.20592 0.89635 0.93730 0.88935 0.91626 1.45735 1.14093 1.53544 1.20526 1.17090 0.81097 0.78161 0.84901 1.90672 1.76918 1.43967 1.33561 1.20562 0.96003 1.07833 0.96212 1.22841 0.94785 1.02836 0.89611 1.43173 1.12469 1.38835 1.13448 1.18221 0.83158 1.01689 0.96045 1.21176 0.94842 0.99797 1.00717 1.21386 0.94798 0.98868 0.96538 1.21703 1.01151 0.97054 0.94122 1.21444 0.91896 0.96740 1.01193 1.21191 0.99180 1.01854 0.93230 1.26004 0.83058 0.97865 1.01355 1.70617 1.27229 1.19637 1.02748 1.22629 1.01249 0.90970 1.03540 1.22921 1.03271 1.03197 0.90907 1.23288 1.00304 0.97092 1.01456 0.94227 0.79576 0.94619 0.93874 0.75540 0.77981 0.85008 0.82827 0.82565 0.82148 0.83308 0.73262 0.85242 0.90355 0.87063 0.87454 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.93 13.06 21.65 0.28 -61.64 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 3 Si 0.98 47.42 29.55 68.60 2.03 49.44 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.74 -39.57 5.44 -343.44 -1.87 -41.44 16 10 C 0.15 6.27 5.80 86.38 0.50 6.77 16 11 C 0.18 6.61 2.59 44.99 0.12 6.73 16 12 H 0.07 2.80 7.58 -2.39 -0.02 2.78 16 13 N -0.69 -26.53 3.05 -445.90 -1.36 -27.89 16 14 C 0.60 23.36 6.65 86.63 0.58 23.93 16 15 O -0.57 -23.76 13.90 -4.11 -0.06 -23.82 16 16 C -0.08 -2.76 6.97 40.51 0.28 -2.48 16 17 C 0.04 1.02 10.57 83.61 0.88 1.91 16 18 N -0.40 -9.38 2.97 -349.77 -1.04 -10.42 16 19 C 0.10 1.80 6.63 38.08 0.25 2.05 16 20 C -0.15 -2.27 9.46 22.38 0.21 -2.06 16 21 C -0.10 -1.04 10.04 22.25 0.22 -0.81 16 22 C -0.12 -1.00 10.04 22.29 0.22 -0.78 16 23 C -0.09 -0.83 10.04 22.25 0.22 -0.61 16 24 C -0.14 -1.73 9.46 22.38 0.21 -1.52 16 25 C 0.20 4.89 11.88 180.02 2.14 7.03 16 26 N -0.48 -16.08 10.99 -188.62 -2.07 -18.15 16 27 C -0.16 -4.94 5.71 -10.79 -0.06 -5.01 16 28 C -0.17 -4.58 9.74 30.62 0.30 -4.29 16 29 C -0.18 -5.36 9.82 30.62 0.30 -5.06 16 30 H 0.25 15.47 8.31 -92.71 -0.77 14.69 16 31 H 0.37 21.73 7.33 -92.71 -0.68 21.06 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.41 16.35 8.31 -92.71 -0.77 15.58 16 35 H 0.20 4.87 7.11 -2.92 -0.02 4.85 16 36 H 0.13 1.96 6.78 -2.91 -0.02 1.94 16 37 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 38 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 39 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.15 1.32 6.74 -2.91 -0.02 1.30 16 41 H 0.25 3.65 7.03 -2.91 -0.02 3.63 16 42 H 0.13 3.37 8.11 -2.39 -0.02 3.35 16 43 H 0.08 2.43 6.67 -2.39 -0.02 2.41 16 44 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.09 3.21 5.01 -2.39 -0.01 3.20 16 Total: -1.00 -77.67 384.73 3.19 -74.48 By element: Atomic # 1 Polarization: 51.32 SS G_CDS: -0.42 Total: 50.90 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 7.69 Total: 8.53 kcal Atomic # 7 Polarization: -153.48 SS G_CDS: -6.05 Total: -159.54 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.06 Total: -23.82 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -77.67 3.19 -74.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723302057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.569 kcal (2) G-P(sol) polarization free energy of solvation -77.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds