Wall clock time and date at job start Sat Apr 11 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99929 * 2 1 4 4 H 1.48498 * 109.47507 * 270.00049 * 3 2 1 5 5 H 1.48499 * 109.47424 * 30.00254 * 3 2 1 6 6 H 1.48508 * 109.47140 * 150.00083 * 3 2 1 7 7 C 1.38812 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00202 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99666 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99914 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47214 * 179.97438 * 10 9 7 12 12 C 1.53780 * 113.61350 * 174.99353 * 11 10 9 13 13 C 1.53784 * 87.07743 * 139.98071 * 12 11 10 14 14 N 1.46504 * 113.61339 * 89.11361 * 13 12 11 15 15 C 1.34777 * 119.99854 * 156.52596 * 14 13 12 16 16 O 1.21633 * 119.99979 * 0.02562 * 15 14 13 17 17 C 1.47308 * 120.00070 * 180.27795 * 15 14 13 18 18 C 1.36441 * 126.19234 * 179.72732 * 17 15 14 19 19 N 1.36143 * 106.76824 * 179.97438 * 18 17 15 20 20 C 1.40204 * 126.22002 * 179.97438 * 19 18 17 21 21 C 1.38835 * 120.06742 * 359.72637 * 20 19 18 22 22 C 1.38120 * 119.93477 * 179.79180 * 21 20 19 23 23 C 1.38278 * 120.06711 * 0.48113 * 22 21 20 24 24 C 1.38287 * 120.12779 * 359.74718 * 23 22 21 25 25 C 1.38123 * 120.06424 * 0.02562 * 24 23 22 26 26 C 1.36109 * 107.55762 * 359.97438 * 19 18 17 27 27 N 1.30151 * 109.01096 * 359.74425 * 26 19 18 28 28 C 1.53782 * 87.17473 * 334.52844 * 13 12 11 29 29 H 0.97000 * 119.99825 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99966 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.48082 * 59.99859 * 10 9 7 32 32 H 1.09001 * 109.47189 * 299.99138 * 10 9 7 33 33 H 1.08998 * 112.84799 * 43.80005 * 11 10 9 34 34 H 1.08997 * 113.61813 * 25.43534 * 12 11 10 35 35 H 1.08992 * 113.69102 * 254.53505 * 12 11 10 36 36 H 1.08995 * 113.61706 * 219.93225 * 13 12 11 37 37 H 0.97000 * 120.00410 * 336.53321 * 14 13 12 38 38 H 1.08005 * 126.62092 * 359.95821 * 18 17 15 39 39 H 1.07999 * 120.02949 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.96553 * 180.24732 * 22 21 20 41 41 H 1.07993 * 119.93888 * 179.72401 * 23 22 21 42 42 H 1.08001 * 119.96152 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.02565 * 179.97438 * 25 24 23 44 44 H 1.08001 * 125.48997 * 179.97438 * 26 19 18 45 45 H 1.08997 * 113.62016 * 140.02596 * 28 13 12 46 46 H 1.09002 * 113.61061 * 270.92788 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0011 12 6 6.4784 -3.4589 0.1240 13 6 7.4240 -2.8207 -0.9072 14 7 8.4707 -1.9892 -0.3079 15 6 9.6156 -1.7582 -0.9806 16 8 9.7795 -2.2397 -2.0854 17 6 10.6706 -0.9271 -0.3754 18 6 11.8745 -0.6177 -0.9381 19 7 12.5361 0.1668 -0.0434 20 6 13.8156 0.7153 -0.2100 21 6 14.5320 0.4689 -1.3734 22 6 15.7905 1.0142 -1.5364 23 6 16.3411 1.7967 -0.5380 24 6 15.6319 2.0399 0.6239 25 6 14.3710 1.5012 0.7905 26 6 11.7296 0.3217 1.0420 27 7 10.6183 -0.3249 0.8402 28 6 6.2119 -2.0182 -1.4090 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3622 0.0014 31 1 3.8491 -3.0424 -0.8890 32 1 3.8484 -3.0426 0.8909 33 1 5.9000 -1.4013 0.6963 34 1 5.9833 -4.3604 -0.2368 35 1 6.9289 -3.5884 1.1080 36 1 7.8129 -3.5281 -1.6395 37 1 8.3400 -1.6049 0.5731 38 1 12.2335 -0.9341 -1.9063 39 1 14.1045 -0.1461 -2.1514 40 1 16.3466 0.8261 -2.4429 41 1 17.3271 2.2183 -0.6658 42 1 16.0643 2.6518 1.4017 43 1 13.8178 1.6912 1.6984 44 1 11.9714 0.8925 1.9264 45 1 6.4468 -0.9843 -1.6614 46 1 5.6440 -2.5267 -2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725063382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:24 Heat of formation + Delta-G solvation = 93.944282 kcal Electronic energy + Delta-G solvation = -27371.210362 eV Core-core repulsion = 23456.090409 eV Total energy + Delta-G solvation = -3915.119953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.91962 -40.12732 -39.59765 -38.14298 -34.79269 -34.59846 -33.00499 -31.97666 -31.10763 -30.35713 -29.81779 -27.22240 -25.51012 -24.79246 -24.10240 -23.14243 -22.32665 -21.42732 -21.23560 -20.27159 -19.28774 -19.09680 -17.50361 -17.23776 -16.47577 -16.24552 -16.12961 -15.55401 -15.44644 -14.85945 -14.79334 -14.65515 -14.32841 -14.27154 -14.09384 -13.98696 -13.65732 -13.50256 -13.25712 -12.58214 -12.43997 -12.37936 -12.22644 -11.84114 -11.71329 -11.36584 -11.21498 -10.84392 -10.79541 -10.57052 -10.19311 -10.14785 -10.11403 -9.79507 -9.77418 -9.51915 -9.35039 -9.04376 -8.83960 -8.77921 -7.14493 -5.70826 -3.05126 0.16463 0.57847 1.42147 1.96569 2.04700 3.07052 3.11870 3.32613 3.42773 3.46438 3.49900 3.88361 3.99257 4.04655 4.23168 4.41768 4.52668 4.62312 4.65241 4.67150 4.73761 4.78074 4.96341 4.99320 5.09829 5.12308 5.16909 5.24323 5.59504 5.61273 5.69966 5.73724 5.75907 5.77923 5.91998 5.94004 5.95545 6.03968 6.08034 6.20711 6.23958 6.35749 6.57758 6.65377 6.77313 6.91440 7.21170 7.57693 8.06673 8.16944 8.48834 9.28811 10.01594 10.22194 11.47838 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.001918 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.724698 B =14596.614738 C =15658.798463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.167 3.833 11 C -0.119 4.119 12 C -0.135 4.135 13 C 0.116 3.884 14 N -0.693 5.693 15 C 0.605 3.395 16 O -0.544 6.544 17 C -0.049 4.049 18 C 0.033 3.967 19 N -0.410 5.410 20 C 0.130 3.870 21 C -0.131 4.131 22 C -0.092 4.092 23 C -0.125 4.125 24 C -0.092 4.092 25 C -0.130 4.130 26 C 0.197 3.803 27 N -0.453 5.453 28 C -0.141 4.141 29 H 0.258 0.742 30 H 0.360 0.640 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.410 0.590 38 H 0.192 0.808 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.216 0.784 45 H 0.067 0.933 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.876 1.384 0.942 38.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.040 3.960 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.011 3.989 14 N -0.343 5.343 15 C 0.391 3.609 16 O -0.421 6.421 17 C -0.176 4.176 18 C -0.102 4.102 19 N -0.088 5.088 20 C 0.038 3.962 21 C -0.150 4.150 22 C -0.110 4.110 23 C -0.143 4.143 24 C -0.111 4.111 25 C -0.150 4.150 26 C -0.086 4.086 27 N -0.171 5.171 28 C -0.180 4.180 29 H 0.068 0.932 30 H 0.193 0.807 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.245 0.755 38 H 0.209 0.791 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.232 0.768 45 H 0.085 0.915 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 38.072 0.891 0.688 38.089 hybrid contribution 1.070 1.646 -0.003 1.963 sum 39.142 2.537 0.685 39.230 Atomic orbital electron populations 1.69708 1.05083 1.25713 1.57939 1.24669 0.95244 0.97184 1.02239 0.86531 0.79193 0.84975 0.77759 1.21146 1.21812 1.20346 1.19094 0.80798 0.94704 1.42559 0.89256 1.42708 1.03946 1.02363 1.91074 1.20618 0.87739 0.89176 0.98475 1.22868 0.96343 0.97422 0.97149 1.23282 0.96575 0.98503 0.99039 1.21962 0.86853 0.93415 0.96683 1.45471 1.15889 1.51451 1.21492 1.16797 0.80758 0.79101 0.84243 1.90803 1.80164 1.51668 1.19489 1.20640 0.96142 1.06711 0.94123 1.22729 0.93405 0.96961 0.97095 1.43099 1.12897 1.37037 1.15726 1.17877 0.83650 0.98006 0.96682 1.20985 0.95593 1.02056 0.96413 1.21099 0.94334 0.96160 0.99416 1.21327 1.00530 0.98699 0.93749 1.21085 0.93458 0.98577 0.97937 1.20882 0.96889 0.98725 0.98504 1.25304 0.86662 1.03390 0.93242 1.70655 1.20546 1.10420 1.15456 1.23500 0.95893 1.00936 0.97650 0.93158 0.80710 0.95336 0.95571 0.89476 0.88444 0.91054 0.88131 0.75457 0.79087 0.84835 0.84743 0.85128 0.84705 0.84798 0.76785 0.91468 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.14 13.97 55.49 0.78 -29.36 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 22.91 27.74 -169.99 -4.71 18.20 16 4 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 7 C -0.24 -7.08 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.76 -18.64 5.41 -59.91 -0.32 -18.96 16 10 C 0.17 3.29 6.10 -4.04 -0.02 3.27 16 11 C -0.12 -1.85 3.65 -89.66 -0.33 -2.18 16 12 C -0.14 -1.68 7.38 -25.92 -0.19 -1.87 16 13 C 0.12 1.53 4.30 -67.11 -0.29 1.24 16 14 N -0.69 -9.11 5.26 -54.12 -0.28 -9.40 16 15 C 0.61 8.60 7.81 -12.57 -0.10 8.50 16 16 O -0.54 -9.00 16.50 5.25 0.09 -8.91 16 17 C -0.05 -0.60 6.97 -83.09 -0.58 -1.18 16 18 C 0.03 0.33 10.57 -16.29 -0.17 0.16 16 19 N -0.41 -3.38 2.97 -61.91 -0.18 -3.56 16 20 C 0.13 0.85 6.63 -83.59 -0.55 0.29 16 21 C -0.13 -0.73 9.46 -39.40 -0.37 -1.10 16 22 C -0.09 -0.37 10.04 -39.61 -0.40 -0.77 16 23 C -0.12 -0.44 10.04 -39.55 -0.40 -0.83 16 24 C -0.09 -0.33 10.04 -39.61 -0.40 -0.73 16 25 C -0.13 -0.62 9.46 -39.41 -0.37 -0.99 16 26 C 0.20 1.65 11.88 -89.68 -1.07 0.59 16 27 N -0.45 -5.22 10.99 -10.97 -0.12 -5.34 16 28 C -0.14 -2.11 7.45 -25.78 -0.19 -2.30 16 29 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 30 H 0.36 8.74 5.53 -40.82 -0.23 8.52 16 31 H 0.03 0.57 7.85 -51.93 -0.41 0.16 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.10 1.12 8.10 -51.93 -0.42 0.69 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.36 7.50 -51.93 -0.39 0.97 16 37 H 0.41 5.06 8.41 -40.82 -0.34 4.71 16 38 H 0.19 1.53 7.11 -52.48 -0.37 1.16 16 39 H 0.13 0.62 6.78 -52.49 -0.36 0.27 16 40 H 0.13 0.28 8.06 -52.49 -0.42 -0.14 16 41 H 0.13 0.19 8.06 -52.49 -0.42 -0.23 16 42 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 43 H 0.13 0.38 6.74 -52.48 -0.35 0.02 16 44 H 0.22 0.92 7.03 -52.49 -0.37 0.55 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -36.92 387.38 -10.81 -47.73 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.20 Total: 8.93 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -5.68 Total: -5.17 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -0.14 Total: -66.62 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.92 -10.81 -47.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725063382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.679 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds