Wall clock time and date at job start Sat Apr 11 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99929 * 2 1 4 4 H 1.48498 * 109.47507 * 270.00049 * 3 2 1 5 5 H 1.48499 * 109.47424 * 30.00254 * 3 2 1 6 6 H 1.48508 * 109.47140 * 150.00083 * 3 2 1 7 7 C 1.38812 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00202 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99666 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99914 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47214 * 179.97438 * 10 9 7 12 12 C 1.53780 * 113.61350 * 174.99353 * 11 10 9 13 13 C 1.53784 * 87.07743 * 139.98071 * 12 11 10 14 14 N 1.46504 * 113.61339 * 89.11361 * 13 12 11 15 15 C 1.34777 * 119.99854 * 156.52596 * 14 13 12 16 16 O 1.21633 * 119.99979 * 0.02562 * 15 14 13 17 17 C 1.47308 * 120.00070 * 180.27795 * 15 14 13 18 18 C 1.36441 * 126.19234 * 179.72732 * 17 15 14 19 19 N 1.36143 * 106.76824 * 179.97438 * 18 17 15 20 20 C 1.40204 * 126.22002 * 179.97438 * 19 18 17 21 21 C 1.38835 * 120.06742 * 359.72637 * 20 19 18 22 22 C 1.38120 * 119.93477 * 179.79180 * 21 20 19 23 23 C 1.38278 * 120.06711 * 0.48113 * 22 21 20 24 24 C 1.38287 * 120.12779 * 359.74718 * 23 22 21 25 25 C 1.38123 * 120.06424 * 0.02562 * 24 23 22 26 26 C 1.36109 * 107.55762 * 359.97438 * 19 18 17 27 27 N 1.30151 * 109.01096 * 359.74425 * 26 19 18 28 28 C 1.53782 * 87.17473 * 334.52844 * 13 12 11 29 29 H 0.97000 * 119.99825 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99966 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.48082 * 59.99859 * 10 9 7 32 32 H 1.09001 * 109.47189 * 299.99138 * 10 9 7 33 33 H 1.08998 * 112.84799 * 43.80005 * 11 10 9 34 34 H 1.08997 * 113.61813 * 25.43534 * 12 11 10 35 35 H 1.08992 * 113.69102 * 254.53505 * 12 11 10 36 36 H 1.08995 * 113.61706 * 219.93225 * 13 12 11 37 37 H 0.97000 * 120.00410 * 336.53321 * 14 13 12 38 38 H 1.08005 * 126.62092 * 359.95821 * 18 17 15 39 39 H 1.07999 * 120.02949 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.96553 * 180.24732 * 22 21 20 41 41 H 1.07993 * 119.93888 * 179.72401 * 23 22 21 42 42 H 1.08001 * 119.96152 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.02565 * 179.97438 * 25 24 23 44 44 H 1.08001 * 125.48997 * 179.97438 * 26 19 18 45 45 H 1.08997 * 113.62016 * 140.02596 * 28 13 12 46 46 H 1.09002 * 113.61061 * 270.92788 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0011 12 6 6.4784 -3.4589 0.1240 13 6 7.4240 -2.8207 -0.9072 14 7 8.4707 -1.9892 -0.3079 15 6 9.6156 -1.7582 -0.9806 16 8 9.7795 -2.2397 -2.0854 17 6 10.6706 -0.9271 -0.3754 18 6 11.8745 -0.6177 -0.9381 19 7 12.5361 0.1668 -0.0434 20 6 13.8156 0.7153 -0.2100 21 6 14.5320 0.4689 -1.3734 22 6 15.7905 1.0142 -1.5364 23 6 16.3411 1.7967 -0.5380 24 6 15.6319 2.0399 0.6239 25 6 14.3710 1.5012 0.7905 26 6 11.7296 0.3217 1.0420 27 7 10.6183 -0.3249 0.8402 28 6 6.2119 -2.0182 -1.4090 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3622 0.0014 31 1 3.8491 -3.0424 -0.8890 32 1 3.8484 -3.0426 0.8909 33 1 5.9000 -1.4013 0.6963 34 1 5.9833 -4.3604 -0.2368 35 1 6.9289 -3.5884 1.1080 36 1 7.8129 -3.5281 -1.6395 37 1 8.3400 -1.6049 0.5731 38 1 12.2335 -0.9341 -1.9063 39 1 14.1045 -0.1461 -2.1514 40 1 16.3466 0.8261 -2.4429 41 1 17.3271 2.2183 -0.6658 42 1 16.0643 2.6518 1.4017 43 1 13.8178 1.6912 1.6984 44 1 11.9714 0.8925 1.9264 45 1 6.4468 -0.9843 -1.6614 46 1 5.6440 -2.5267 -2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725063382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:23 Heat of formation + Delta-G solvation = 70.884749 kcal Electronic energy + Delta-G solvation = -27372.210298 eV Core-core repulsion = 23456.090409 eV Total energy + Delta-G solvation = -3916.119889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.57900 -41.16994 -40.04813 -39.28064 -36.48623 -35.36010 -34.32498 -33.14483 -32.31643 -30.96189 -30.40327 -28.83981 -26.64011 -25.76678 -24.57187 -24.53603 -23.19897 -22.78592 -21.95010 -21.10581 -20.45375 -19.83158 -19.45899 -17.93203 -17.18068 -16.96173 -16.93211 -16.67851 -16.20681 -16.02942 -15.87434 -15.74891 -15.56353 -15.14807 -15.00569 -14.81937 -14.71629 -14.47371 -14.30584 -13.90868 -13.86672 -13.49631 -13.35077 -13.01246 -12.74366 -12.67977 -12.18672 -12.11103 -11.88258 -11.81984 -11.75538 -11.55166 -11.42379 -11.23334 -11.16044 -10.90508 -10.17006 -10.06178 -9.92710 -9.37968 -9.27409 -8.03418 -5.35797 -0.29641 0.29412 0.68147 1.36209 1.37638 1.39296 1.39692 1.46618 2.16272 2.37496 2.47351 2.75100 3.21591 3.27752 3.47072 3.53864 3.57527 3.61472 3.86942 3.87175 3.92807 4.01452 4.09738 4.11040 4.21736 4.35143 4.39461 4.53171 4.63502 4.71169 4.73987 4.85299 4.88331 4.90443 4.96317 4.98246 5.11436 5.13429 5.25868 5.33673 5.35183 5.39010 5.49225 5.63955 5.74634 5.76267 6.06909 6.21326 6.38793 6.68093 7.08031 7.13980 7.85853 8.04401 9.18280 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.001918 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.724698 B =14596.614738 C =15658.798463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.253 1.253 7 C -0.235 4.235 8 H 0.057 0.943 9 N -0.759 5.759 10 C 0.163 3.837 11 C -0.115 4.115 12 C -0.116 4.116 13 C 0.123 3.877 14 N -0.689 5.689 15 C 0.602 3.398 16 O -0.577 6.577 17 C -0.080 4.080 18 C 0.037 3.963 19 N -0.403 5.403 20 C 0.100 3.900 21 C -0.144 4.144 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.096 4.096 25 C -0.133 4.133 26 C 0.204 3.796 27 N -0.482 5.482 28 C -0.144 4.144 29 H 0.258 0.742 30 H 0.364 0.636 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.414 0.586 38 H 0.202 0.798 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.253 0.747 45 H 0.054 0.946 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 42.613 2.701 1.946 42.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.178 1.178 7 C -0.366 4.366 8 H 0.075 0.925 9 N -0.404 5.404 10 C 0.037 3.963 11 C -0.134 4.134 12 C -0.154 4.154 13 C 0.018 3.982 14 N -0.338 5.338 15 C 0.390 3.610 16 O -0.457 6.457 17 C -0.207 4.207 18 C -0.100 4.100 19 N -0.080 5.080 20 C 0.009 3.991 21 C -0.164 4.164 22 C -0.118 4.118 23 C -0.141 4.141 24 C -0.114 4.114 25 C -0.152 4.152 26 C -0.079 4.079 27 N -0.200 5.200 28 C -0.182 4.182 29 H 0.067 0.933 30 H 0.197 0.803 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.251 0.749 38 H 0.219 0.781 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.177 0.823 43 H 0.170 0.830 44 H 0.269 0.731 45 H 0.073 0.927 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 41.871 2.191 1.714 41.964 hybrid contribution 0.021 1.209 -0.322 1.251 sum 41.892 3.400 1.392 42.053 Atomic orbital electron populations 1.69886 1.07049 1.26637 1.59872 1.25503 0.96151 1.01205 1.02777 0.85399 0.78625 0.79721 0.77988 1.20715 1.21967 1.17813 1.19100 0.82895 0.93532 1.41077 0.92463 1.42749 1.02412 1.04361 1.90880 1.20813 0.90061 0.87163 0.98220 1.22787 0.93541 0.99420 0.97662 1.23216 0.95043 0.97367 0.99798 1.21850 0.86429 0.93014 0.96919 1.45450 1.15609 1.51241 1.21537 1.17110 0.81219 0.78836 0.83876 1.90769 1.80886 1.53164 1.20844 1.20464 0.96630 1.08324 0.95300 1.22897 0.92910 0.96578 0.97615 1.43176 1.13434 1.36219 1.15131 1.18158 0.83214 0.99727 0.98013 1.21174 0.96349 1.02469 0.96408 1.21380 0.93913 0.96040 1.00442 1.21706 1.01383 0.97703 0.93320 1.21448 0.93005 0.98370 0.98598 1.21189 0.97439 0.97930 0.98628 1.26039 0.85680 1.02249 0.93955 1.70589 1.22318 1.11725 1.15395 1.23516 0.96868 1.00523 0.97337 0.93346 0.80291 0.95416 0.95556 0.89439 0.87084 0.89289 0.88253 0.74922 0.78112 0.84862 0.83048 0.82872 0.82290 0.82990 0.73122 0.92747 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.71 13.97 21.65 0.30 -64.41 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.96 47.33 27.74 68.60 1.90 49.23 16 4 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.25 -11.43 6.52 99.48 0.65 -10.78 16 7 C -0.23 -13.94 10.47 84.03 0.88 -13.06 16 8 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 9 N -0.76 -36.98 5.41 -343.45 -1.86 -38.84 16 10 C 0.16 6.31 6.10 86.38 0.53 6.84 16 11 C -0.12 -3.42 3.65 -10.17 -0.04 -3.45 16 12 C -0.12 -2.62 7.38 31.12 0.23 -2.39 16 13 C 0.12 3.12 4.30 45.52 0.20 3.32 16 14 N -0.69 -17.66 5.26 -443.39 -2.33 -20.00 16 15 C 0.60 17.19 7.81 86.63 0.68 17.86 16 16 O -0.58 -19.39 16.50 -4.14 -0.07 -19.45 16 17 C -0.08 -1.98 6.97 40.50 0.28 -1.69 16 18 C 0.04 0.73 10.57 83.60 0.88 1.61 16 19 N -0.40 -6.18 2.97 -349.77 -1.04 -7.22 16 20 C 0.10 1.15 6.63 38.08 0.25 1.41 16 21 C -0.14 -1.45 9.46 22.38 0.21 -1.24 16 22 C -0.10 -0.62 10.04 22.25 0.22 -0.40 16 23 C -0.12 -0.51 10.04 22.29 0.22 -0.29 16 24 C -0.10 -0.40 10.04 22.25 0.22 -0.18 16 25 C -0.13 -0.92 9.46 22.38 0.21 -0.71 16 26 C 0.20 3.08 11.88 180.02 2.14 5.22 16 27 N -0.48 -10.68 10.99 -188.63 -2.07 -12.75 16 28 C -0.14 -4.19 7.45 31.21 0.23 -3.96 16 29 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 30 H 0.36 17.11 5.53 -92.71 -0.51 16.60 16 31 H 0.03 1.09 7.85 -2.39 -0.02 1.07 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.11 2.26 8.10 -2.39 -0.02 2.24 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 2.61 7.50 -2.39 -0.02 2.59 16 37 H 0.41 9.83 8.41 -92.71 -0.78 9.05 16 38 H 0.20 3.28 7.11 -2.91 -0.02 3.26 16 39 H 0.13 1.21 6.78 -2.91 -0.02 1.19 16 40 H 0.15 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.15 -0.10 8.06 -2.91 -0.02 -0.12 16 42 H 0.16 -0.15 8.06 -2.91 -0.02 -0.18 16 43 H 0.15 0.36 6.74 -2.91 -0.02 0.34 16 44 H 0.25 1.41 7.03 -2.91 -0.02 1.39 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.09 2.72 7.90 -2.39 -0.02 2.70 16 Total: -1.00 -81.44 387.38 2.33 -79.11 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.33 Total: 28.94 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 7.82 Total: 5.38 kcal Atomic # 7 Polarization: -136.22 SS G_CDS: -7.00 Total: -143.21 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.07 Total: -19.45 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.90 Total: 49.23 kcal Total: -81.44 2.33 -79.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725063382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.995 kcal (2) G-P(sol) polarization free energy of solvation -81.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds