Wall clock time and date at job start Sat Apr 11 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47137 * 269.99883 * 3 2 1 5 5 H 1.48503 * 109.46884 * 30.00012 * 3 2 1 6 6 H 1.48502 * 109.47201 * 149.99512 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21513 * 120.00315 * 359.72062 * 14 13 12 16 16 C 1.48160 * 119.99584 * 179.72357 * 14 13 12 17 17 C 1.39957 * 120.89226 * 359.72103 * 16 14 13 18 18 C 1.38033 * 119.13819 * 179.72782 * 17 16 14 19 19 N 1.31867 * 120.98304 * 0.55647 * 18 17 16 20 20 C 1.32231 * 121.96649 * 359.71354 * 19 18 17 21 21 N 1.39796 * 119.62585 * 179.97438 * 20 19 18 22 22 C 1.36647 * 125.68107 * 179.71615 * 21 20 19 23 23 C 1.34814 * 108.19033 * 179.83281 * 22 21 20 24 24 C 1.40974 * 107.48494 * 0.42423 * 23 22 21 25 25 C 1.34806 * 107.49399 * 359.73502 * 24 23 22 26 26 C 1.38925 * 120.75078 * 0.02562 * 20 19 18 27 27 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 28 28 C 1.52999 * 117.50225 * 8.74581 * 27 10 9 29 29 C 1.52999 * 117.49761 * 300.08359 * 27 10 9 30 30 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 32 32 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 33 33 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 35 35 H 1.07996 * 120.42682 * 359.97308 * 17 16 14 36 36 H 1.07995 * 119.50915 * 180.29605 * 18 17 16 37 37 H 1.07995 * 125.90451 * 0.02562 * 22 21 20 38 38 H 1.07999 * 126.25213 * 180.18625 * 23 22 21 39 39 H 1.08008 * 126.25385 * 179.71067 * 24 23 22 40 40 H 1.07999 * 125.91030 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.53025 * 179.97438 * 26 20 19 42 42 H 1.09006 * 115.55266 * 154.41988 * 27 10 9 43 43 H 1.08993 * 117.49781 * 359.97438 * 28 27 10 44 44 H 1.09000 * 117.50138 * 145.02405 * 28 27 10 45 45 H 1.09009 * 117.50018 * 214.98040 * 29 27 10 46 46 H 1.08999 * 117.50301 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.3995 -6.2238 -2.2230 16 6 -0.5135 -4.7228 -4.0136 17 6 -0.1360 -3.4834 -4.5429 18 6 -0.5767 -3.1279 -5.8018 19 7 -1.3527 -3.9322 -6.5016 20 6 -1.7387 -5.1095 -6.0396 21 7 -2.5624 -5.9231 -6.8232 22 6 -3.0284 -7.1588 -6.4722 23 6 -3.7904 -7.6237 -7.4825 24 6 -3.7888 -6.6465 -8.4987 25 6 -3.0308 -5.6175 -8.0700 26 6 -1.3359 -5.5467 -4.7840 27 6 2.4207 -4.0350 1.4391 28 6 1.8113 -3.1975 2.5652 29 6 3.2977 -3.0593 2.2264 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 0.3131 -4.9200 0.0295 33 1 1.7562 -5.6749 -0.6890 34 1 1.0081 -3.4761 -2.2960 35 1 0.4952 -2.8157 -3.9754 36 1 -0.2851 -2.1750 -6.2180 37 1 -2.8244 -7.6726 -5.5445 38 1 -4.3045 -8.5731 -7.5101 39 1 -4.3009 -6.7108 -9.4474 40 1 -2.8282 -4.7088 -8.6175 41 1 -1.6536 -6.5088 -4.4100 42 1 2.5619 -5.1000 1.6237 43 1 1.1523 -2.3769 2.2820 44 1 1.5519 -3.7114 3.4908 45 1 4.0155 -3.4823 2.9293 46 1 3.6166 -2.1482 1.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731396481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:37 Heat of formation + Delta-G solvation = 90.921591 kcal Electronic energy + Delta-G solvation = -28374.813158 eV Core-core repulsion = 24459.562131 eV Total energy + Delta-G solvation = -3915.251026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.78003 -41.42172 -40.19184 -39.10513 -36.06272 -35.13133 -34.52435 -33.88213 -32.54515 -30.50900 -29.96453 -29.71341 -26.39069 -25.35192 -24.86977 -23.92515 -22.98610 -22.29788 -21.22256 -21.13611 -20.56676 -19.84843 -19.12555 -18.27599 -17.60062 -17.05628 -16.80428 -16.61884 -16.52957 -16.28270 -16.11082 -15.80786 -15.30667 -15.23852 -14.82742 -14.64414 -14.58617 -14.39710 -14.32772 -13.71647 -13.35533 -13.23507 -12.96015 -12.91153 -12.84883 -12.65667 -12.58085 -12.12356 -11.94684 -11.61450 -11.51807 -11.28872 -11.02030 -10.99348 -10.94322 -10.78870 -10.61050 -10.13370 -9.32295 -9.26408 -8.98418 -7.86919 -5.14423 -0.61430 -0.35158 1.23002 1.47394 1.50295 1.53887 1.58824 1.79142 2.00145 2.02777 2.59748 2.67035 3.13564 3.19875 3.37324 3.49314 3.52247 3.72269 3.80365 3.88641 3.98904 4.22680 4.25428 4.29483 4.34915 4.37106 4.45962 4.49781 4.58008 4.63107 4.65999 4.68864 4.81999 4.92341 4.98508 5.17854 5.19793 5.22033 5.26518 5.31362 5.38608 5.49367 5.68988 5.69577 5.85774 6.03225 6.28149 6.32766 6.40338 6.65669 7.00228 7.42047 8.11703 8.37267 9.35041 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.002583 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.225580 B =10837.488120 C =12355.307978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.063 4.063 3 Si 0.953 3.047 4 H -0.288 1.288 5 H -0.308 1.308 6 H -0.275 1.275 7 C -0.216 4.216 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.192 3.808 11 H 0.065 0.935 12 C 0.126 3.874 13 N -0.695 5.695 14 C 0.555 3.445 15 O -0.568 6.568 16 C -0.064 4.064 17 C -0.147 4.147 18 C 0.139 3.861 19 N -0.501 5.501 20 C 0.333 3.667 21 N -0.405 5.405 22 C -0.032 4.032 23 C -0.185 4.185 24 C -0.198 4.198 25 C -0.010 4.010 26 C -0.138 4.138 27 C -0.167 4.167 28 C -0.174 4.174 29 C -0.171 4.171 30 H 0.246 0.754 31 H 0.374 0.626 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.414 0.586 35 H 0.164 0.836 36 H 0.207 0.793 37 H 0.181 0.819 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.175 0.825 41 H 0.154 0.846 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 -11.813 -11.724 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.256 4.256 3 Si 0.785 3.215 4 H -0.215 1.215 5 H -0.236 1.236 6 H -0.201 1.201 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.360 5.360 10 C 0.083 3.917 11 H 0.083 0.917 12 C 0.002 3.998 13 N -0.345 5.345 14 C 0.342 3.658 15 O -0.449 6.449 16 C -0.076 4.076 17 C -0.168 4.168 18 C -0.018 4.018 19 N -0.214 5.214 20 C 0.106 3.894 21 N -0.081 5.081 22 C -0.157 4.157 23 C -0.209 4.209 24 C -0.222 4.222 25 C -0.135 4.135 26 C -0.161 4.161 27 C -0.188 4.188 28 C -0.212 4.212 29 C -0.208 4.208 30 H 0.055 0.945 31 H 0.207 0.793 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.252 0.748 35 H 0.181 0.819 36 H 0.224 0.776 37 H 0.198 0.802 38 H 0.184 0.816 39 H 0.182 0.818 40 H 0.192 0.808 41 H 0.171 0.829 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.529 -12.018 -12.044 17.022 hybrid contribution 0.229 1.436 1.035 1.785 sum -0.300 -10.582 -11.009 15.273 Atomic orbital electron populations 1.69783 1.06223 1.25484 1.59825 1.25248 0.95889 1.00006 1.04409 0.85445 0.77715 0.81149 0.77236 1.21510 1.23596 1.20072 1.19383 0.91082 0.84418 1.39883 0.90531 1.42541 1.05288 1.00247 1.87953 1.20150 0.94074 0.84734 0.92772 0.91677 1.21592 0.98494 0.97782 0.81963 1.45843 1.49209 1.21666 1.17830 1.18232 0.78698 0.84111 0.84783 1.90737 1.58070 1.23500 1.72575 1.20174 0.97729 0.95445 0.94211 1.22644 1.00924 0.95578 0.97661 1.23127 0.90099 0.98546 0.90053 1.66940 1.13794 1.03112 1.37598 1.18244 0.92682 0.89689 0.88783 1.41633 1.37442 1.14515 1.14523 1.22392 1.03901 0.86124 1.03257 1.21405 1.03529 1.01834 0.94113 1.21415 1.04408 0.94575 1.01773 1.22363 1.02405 1.02650 0.86122 1.21600 0.99265 1.02378 0.92870 1.23060 1.04902 0.96807 0.94081 1.22776 0.96783 1.03134 0.98485 1.22848 0.93363 1.01227 1.03357 0.94464 0.79324 0.92512 0.89511 0.74808 0.81899 0.77644 0.80235 0.81614 0.81846 0.80817 0.82887 0.86619 0.90374 0.89274 0.88200 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.14 13.06 21.65 0.28 -52.86 16 2 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 3 Si 0.95 42.30 29.55 68.60 2.03 44.32 16 4 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.22 -10.01 8.15 84.04 0.69 -9.32 16 8 H 0.08 3.46 6.91 -2.91 -0.02 3.44 16 9 N -0.72 -29.51 3.08 -322.94 -0.99 -30.50 16 10 C 0.19 6.18 2.86 44.99 0.13 6.31 16 11 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 12 C 0.13 3.71 5.22 86.38 0.45 4.16 16 13 N -0.69 -20.27 5.35 -465.66 -2.49 -22.76 16 14 C 0.56 17.07 7.80 86.88 0.68 17.74 16 15 O -0.57 -20.47 16.44 -3.76 -0.06 -20.53 16 16 C -0.06 -1.72 5.91 -19.90 -0.12 -1.84 16 17 C -0.15 -3.32 9.61 22.64 0.22 -3.10 16 18 C 0.14 2.88 11.17 84.64 0.95 3.83 16 19 N -0.50 -12.43 9.80 -192.98 -1.89 -14.32 16 20 C 0.33 8.69 7.48 132.79 0.99 9.69 16 21 N -0.41 -9.98 2.97 -352.20 -1.04 -11.03 16 22 C -0.03 -0.69 10.72 83.16 0.89 0.20 16 23 C -0.18 -3.51 10.86 22.15 0.24 -3.26 16 24 C -0.20 -3.81 10.86 22.15 0.24 -3.57 16 25 C -0.01 -0.22 11.00 83.15 0.91 0.69 16 26 C -0.14 -3.64 9.05 22.76 0.21 -3.43 16 27 C -0.17 -5.05 5.70 -10.80 -0.06 -5.11 16 28 C -0.17 -6.00 9.74 30.62 0.30 -5.70 16 29 C -0.17 -5.41 9.87 30.62 0.30 -5.11 16 30 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 31 H 0.37 17.37 7.80 -92.71 -0.72 16.65 16 32 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.41 11.79 6.28 -92.71 -0.58 11.21 16 35 H 0.16 3.32 6.53 -2.91 -0.02 3.30 16 36 H 0.21 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.18 3.20 6.98 -2.91 -0.02 3.18 16 38 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.17 3.50 8.04 -2.91 -0.02 3.48 16 41 H 0.15 3.87 6.37 -2.91 -0.02 3.85 16 42 H 0.12 2.90 8.11 -2.38 -0.02 2.88 16 43 H 0.08 3.39 6.68 -2.39 -0.02 3.37 16 44 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 46 H 0.08 2.91 6.22 -2.39 -0.01 2.90 16 Total: -1.00 -62.08 386.10 3.03 -59.04 By element: Atomic # 1 Polarization: 49.46 SS G_CDS: -0.27 Total: 49.18 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 7.48 Total: -0.56 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -6.14 Total: -131.47 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.06 Total: -20.53 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -62.08 3.03 -59.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731396481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.966 kcal (2) G-P(sol) polarization free energy of solvation -62.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds