Wall clock time and date at job start Sat Apr 11 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99763 * 2 1 4 4 H 1.48494 * 109.47231 * 269.99885 * 3 2 1 5 5 H 1.48504 * 109.47071 * 29.99855 * 3 2 1 6 6 H 1.48501 * 109.47340 * 149.99663 * 3 2 1 7 7 C 1.38808 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00012 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99946 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99897 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47685 * 34.99088 * 10 9 7 12 12 C 1.53002 * 109.47101 * 154.99591 * 10 9 7 13 13 N 1.46494 * 109.47154 * 304.99465 * 12 10 9 14 14 C 1.34773 * 120.00296 * 179.97438 * 13 12 10 15 15 O 1.21681 * 119.99868 * 0.02562 * 14 13 12 16 16 C 1.46764 * 120.00235 * 180.02562 * 14 13 12 17 17 C 1.36555 * 126.84116 * 179.97438 * 16 14 13 18 18 N 1.33168 * 107.79707 * 179.97438 * 17 16 14 19 19 C 1.31373 * 109.76640 * 359.91595 * 18 17 16 20 20 N 1.34265 * 108.98045 * 0.18505 * 19 18 17 21 21 C 1.47000 * 111.33070 * 179.70870 * 20 19 18 22 22 C 1.54387 * 105.49207 * 17.06171 * 21 20 19 23 23 C 1.51656 * 141.06154 * 180.14098 * 19 18 17 24 24 C 1.50699 * 109.46835 * 274.99275 * 10 9 7 25 25 C 1.38234 * 119.99974 * 319.72924 * 24 10 9 26 26 C 1.38236 * 119.99832 * 179.78976 * 25 24 10 27 27 C 1.38237 * 120.00116 * 0.43558 * 26 25 24 28 28 C 1.38232 * 119.99966 * 359.82189 * 27 26 25 29 29 C 1.38232 * 119.99938 * 359.96797 * 28 27 26 30 30 H 0.96997 * 120.00278 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99565 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.46998 * 184.99536 * 12 10 9 33 33 H 1.09000 * 109.47157 * 65.00082 * 12 10 9 34 34 H 0.96998 * 119.99947 * 0.02562 * 13 12 10 35 35 H 1.07998 * 126.09841 * 359.94752 * 17 16 14 36 36 H 1.09000 * 110.23854 * 136.09411 * 21 20 19 37 37 H 1.08995 * 110.24443 * 257.99673 * 21 20 19 38 38 H 1.09001 * 110.99259 * 216.27400 * 22 21 20 39 39 H 1.08999 * 110.96878 * 92.47927 * 22 21 20 40 40 H 1.08999 * 110.47506 * 282.20134 * 23 19 18 41 41 H 1.08993 * 110.48130 * 44.82826 * 23 19 18 42 42 H 1.08001 * 120.00307 * 359.97438 * 25 24 10 43 43 H 1.08003 * 119.99916 * 180.27577 * 26 25 24 44 44 H 1.08004 * 120.00116 * 179.83458 * 27 26 25 45 45 H 1.07996 * 119.99954 * 180.02562 * 28 27 26 46 46 H 1.08005 * 119.99969 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5650 -3.2063 -0.5886 12 6 5.4995 -2.2587 -0.6081 13 7 5.3624 -1.6634 -1.9396 14 6 6.4606 -1.3852 -2.6697 15 8 7.5659 -1.6288 -2.2231 16 6 6.3232 -0.7883 -4.0035 17 6 7.3339 -0.4510 -4.8576 18 7 6.7838 0.0587 -5.9580 19 6 5.4752 0.0581 -5.8417 20 7 5.1432 -0.4548 -4.6462 21 6 3.6854 -0.4734 -4.4584 22 6 3.0855 -0.3013 -5.8705 23 6 4.2229 0.4433 -6.6055 24 6 4.2556 -2.9679 1.4164 25 6 4.5354 -2.0779 2.4366 26 6 4.6627 -2.5334 3.7355 27 6 4.5192 -3.8800 4.0130 28 6 4.2447 -4.7706 2.9922 29 6 4.1131 -4.3146 1.6939 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0007 32 1 6.0110 -3.2178 -0.6897 33 1 6.0785 -1.5914 0.0304 34 1 4.4813 -1.4689 -2.2955 35 1 8.3908 -0.5750 -4.6732 36 1 3.3726 -1.4250 -4.0287 37 1 3.3776 0.3501 -3.8140 38 1 2.1795 0.3039 -5.8388 39 1 2.8906 -1.2693 -6.3321 40 1 4.0649 1.5208 -6.5603 41 1 4.2901 0.1099 -7.6410 42 1 4.6515 -1.0264 2.2192 43 1 4.8768 -1.8374 4.5332 44 1 4.6213 -4.2361 5.0275 45 1 4.1322 -5.8226 3.2091 46 1 3.8982 -5.0105 0.8963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732026034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:56 Heat of formation + Delta-G solvation = 76.540668 kcal Electronic energy + Delta-G solvation = -29473.182676 eV Core-core repulsion = 25557.308046 eV Total energy + Delta-G solvation = -3915.874630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.61726 -39.50859 -38.79623 -36.64502 -36.05467 -33.85767 -32.39929 -31.79533 -30.57740 -30.11983 -29.11788 -28.04162 -27.31395 -24.13476 -22.96335 -22.38865 -22.18279 -21.84789 -20.58091 -20.14472 -19.81993 -18.09517 -17.49532 -16.78150 -16.44384 -15.83415 -15.59548 -15.22090 -14.87285 -14.74039 -14.49235 -14.30666 -13.99907 -13.98900 -13.63160 -13.49965 -13.25778 -13.05797 -12.94426 -12.93436 -12.58216 -12.45821 -12.27664 -11.85388 -11.52655 -11.36831 -11.18960 -11.00844 -10.88478 -10.64259 -10.35166 -10.32341 -9.90564 -9.80258 -9.74628 -9.24999 -9.02501 -8.52748 -8.44268 -8.33337 -7.57348 -5.98918 -3.37970 1.30888 1.73934 1.80451 2.44571 2.77672 3.13970 3.21901 3.24299 3.29118 3.41549 3.63338 4.15295 4.17706 4.36015 4.41818 4.51949 4.74899 4.92984 5.16599 5.19230 5.21377 5.22447 5.29263 5.30828 5.32952 5.34898 5.43909 5.47815 5.56210 5.59002 5.60158 5.66397 5.88183 5.93593 5.99095 6.01359 6.21829 6.33549 6.46530 6.49470 6.60075 6.80313 6.82425 6.87548 7.10501 7.39327 7.55637 7.74279 7.91046 8.18386 8.24085 8.94162 9.66005 9.83863 11.18444 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.004093 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.080510 B = 6839.705740 C = 8623.325123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.015 3.985 3 Si 0.875 3.125 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.093 0.907 9 N -0.740 5.740 10 C 0.204 3.796 11 H 0.074 0.926 12 C 0.117 3.883 13 N -0.717 5.717 14 C 0.591 3.409 15 O -0.536 6.536 16 C -0.069 4.069 17 C 0.070 3.930 18 N -0.489 5.489 19 C 0.210 3.790 20 N -0.459 5.459 21 C 0.088 3.912 22 C -0.126 4.126 23 C -0.043 4.043 24 C -0.081 4.081 25 C -0.088 4.088 26 C -0.126 4.126 27 C -0.131 4.131 28 C -0.127 4.127 29 C -0.116 4.116 30 H 0.261 0.739 31 H 0.363 0.637 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.404 0.596 35 H 0.187 0.813 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -3.791 -6.845 10.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.182 4.182 3 Si 0.706 3.294 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.111 0.889 9 N -0.382 5.382 10 C 0.094 3.906 11 H 0.092 0.908 12 C -0.007 4.007 13 N -0.369 5.369 14 C 0.378 3.622 15 O -0.413 6.413 16 C -0.184 4.184 17 C -0.085 4.085 18 N -0.208 5.208 19 C -0.053 4.053 20 N -0.143 5.143 21 C -0.033 4.033 22 C -0.165 4.165 23 C -0.083 4.083 24 C -0.084 4.084 25 C -0.106 4.106 26 C -0.144 4.144 27 C -0.149 4.149 28 C -0.145 4.145 29 C -0.135 4.135 30 H 0.072 0.928 31 H 0.196 0.804 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.240 0.760 35 H 0.204 0.796 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.718 -3.829 -6.959 11.075 hybrid contribution -0.450 1.103 0.987 1.547 sum 7.268 -2.726 -5.972 9.794 Atomic orbital electron populations 1.69682 1.04996 1.25964 1.56526 1.24620 0.95091 0.96842 1.01642 0.86725 0.79425 0.85498 0.77797 1.21209 1.21484 1.20369 1.19021 0.80026 0.94793 1.43929 0.88936 1.42863 1.04275 1.01371 1.89731 1.19443 0.90259 0.90142 0.90768 0.90819 1.21701 0.97897 0.98676 0.82424 1.45975 1.09138 1.63568 1.18249 1.16902 0.84742 0.77951 0.82643 1.90822 1.25338 1.54104 1.71083 1.20949 0.84761 1.15141 0.97538 1.22571 0.99040 0.98590 0.88311 1.69810 1.03910 1.21779 1.25331 1.24533 0.93225 0.99854 0.87643 1.46592 1.06862 1.44901 1.15897 1.22707 0.74814 1.05599 1.00204 1.22756 0.98481 1.02701 0.92517 1.20784 0.86122 1.01975 0.99371 1.20774 0.97061 0.93010 0.97579 1.20920 0.97787 0.99638 0.92259 1.21089 1.01112 0.95565 0.96640 1.21005 1.01596 0.93663 0.98654 1.21008 1.01176 0.99116 0.93179 1.21001 1.00741 0.95188 0.96534 0.92840 0.80374 0.90693 0.91261 0.75950 0.79609 0.88144 0.87914 0.87385 0.89077 0.88174 0.88078 0.86484 0.86779 0.86896 0.86764 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.53 13.97 55.49 0.78 -25.75 16 2 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 3 Si 0.88 20.20 27.74 -169.99 -4.71 15.48 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 7 C -0.25 -6.12 10.40 -15.06 -0.16 -6.27 16 8 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 9 N -0.74 -15.03 3.62 -54.55 -0.20 -15.23 16 10 C 0.20 3.48 2.64 -69.08 -0.18 3.29 16 11 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 12 C 0.12 1.84 5.21 -4.04 -0.02 1.82 16 13 N -0.72 -11.28 5.38 -61.59 -0.33 -11.61 16 14 C 0.59 9.92 7.79 -12.82 -0.10 9.82 16 15 O -0.54 -10.21 16.90 5.21 0.09 -10.12 16 16 C -0.07 -1.08 7.08 -82.04 -0.58 -1.66 16 17 C 0.07 1.05 11.65 -17.58 -0.20 0.85 16 18 N -0.49 -7.43 11.21 -10.28 -0.12 -7.55 16 19 C 0.21 2.75 8.56 -154.92 -1.33 1.43 16 20 N -0.46 -6.20 3.58 -108.27 -0.39 -6.59 16 21 C 0.09 0.97 6.59 -3.04 -0.02 0.95 16 22 C -0.13 -0.95 7.18 -25.20 -0.18 -1.14 16 23 C -0.04 -0.36 6.86 -26.60 -0.18 -0.55 16 24 C -0.08 -1.37 4.92 -104.62 -0.51 -1.88 16 25 C -0.09 -1.51 9.32 -39.58 -0.37 -1.88 16 26 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 27 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 28 C -0.13 -1.78 10.05 -39.59 -0.40 -2.17 16 29 C -0.12 -1.76 9.67 -39.58 -0.38 -2.15 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.36 7.54 5.66 -40.82 -0.23 7.31 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.40 6.21 5.91 -40.82 -0.24 5.97 16 35 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 36 H 0.10 1.08 7.36 -51.93 -0.38 0.70 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.12 2.10 7.73 -52.49 -0.41 1.70 16 43 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 44 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.12 1.55 8.04 -52.48 -0.42 1.13 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -32.15 384.87 -10.93 -43.08 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -6.34 Total: 16.31 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -5.51 Total: -3.82 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -0.26 Total: -66.73 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.71 Total: 15.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.15 -10.93 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732026034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.622 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds