Wall clock time and date at job start Sat Apr 11 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99763 * 2 1 4 4 H 1.48494 * 109.47231 * 269.99885 * 3 2 1 5 5 H 1.48504 * 109.47071 * 29.99855 * 3 2 1 6 6 H 1.48501 * 109.47340 * 149.99663 * 3 2 1 7 7 C 1.38808 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00012 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99946 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99897 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47685 * 34.99088 * 10 9 7 12 12 C 1.53002 * 109.47101 * 154.99591 * 10 9 7 13 13 N 1.46494 * 109.47154 * 304.99465 * 12 10 9 14 14 C 1.34773 * 120.00296 * 179.97438 * 13 12 10 15 15 O 1.21681 * 119.99868 * 0.02562 * 14 13 12 16 16 C 1.46764 * 120.00235 * 180.02562 * 14 13 12 17 17 C 1.36555 * 126.84116 * 179.97438 * 16 14 13 18 18 N 1.33168 * 107.79707 * 179.97438 * 17 16 14 19 19 C 1.31373 * 109.76640 * 359.91595 * 18 17 16 20 20 N 1.34265 * 108.98045 * 0.18505 * 19 18 17 21 21 C 1.47000 * 111.33070 * 179.70870 * 20 19 18 22 22 C 1.54387 * 105.49207 * 17.06171 * 21 20 19 23 23 C 1.51656 * 141.06154 * 180.14098 * 19 18 17 24 24 C 1.50699 * 109.46835 * 274.99275 * 10 9 7 25 25 C 1.38234 * 119.99974 * 319.72924 * 24 10 9 26 26 C 1.38236 * 119.99832 * 179.78976 * 25 24 10 27 27 C 1.38237 * 120.00116 * 0.43558 * 26 25 24 28 28 C 1.38232 * 119.99966 * 359.82189 * 27 26 25 29 29 C 1.38232 * 119.99938 * 359.96797 * 28 27 26 30 30 H 0.96997 * 120.00278 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99565 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.46998 * 184.99536 * 12 10 9 33 33 H 1.09000 * 109.47157 * 65.00082 * 12 10 9 34 34 H 0.96998 * 119.99947 * 0.02562 * 13 12 10 35 35 H 1.07998 * 126.09841 * 359.94752 * 17 16 14 36 36 H 1.09000 * 110.23854 * 136.09411 * 21 20 19 37 37 H 1.08995 * 110.24443 * 257.99673 * 21 20 19 38 38 H 1.09001 * 110.99259 * 216.27400 * 22 21 20 39 39 H 1.08999 * 110.96878 * 92.47927 * 22 21 20 40 40 H 1.08999 * 110.47506 * 282.20134 * 23 19 18 41 41 H 1.08993 * 110.48130 * 44.82826 * 23 19 18 42 42 H 1.08001 * 120.00307 * 359.97438 * 25 24 10 43 43 H 1.08003 * 119.99916 * 180.27577 * 26 25 24 44 44 H 1.08004 * 120.00116 * 179.83458 * 27 26 25 45 45 H 1.07996 * 119.99954 * 180.02562 * 28 27 26 46 46 H 1.08005 * 119.99969 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5650 -3.2063 -0.5886 12 6 5.4995 -2.2587 -0.6081 13 7 5.3624 -1.6634 -1.9396 14 6 6.4606 -1.3852 -2.6697 15 8 7.5659 -1.6288 -2.2231 16 6 6.3232 -0.7883 -4.0035 17 6 7.3339 -0.4510 -4.8576 18 7 6.7838 0.0587 -5.9580 19 6 5.4752 0.0581 -5.8417 20 7 5.1432 -0.4548 -4.6462 21 6 3.6854 -0.4734 -4.4584 22 6 3.0855 -0.3013 -5.8705 23 6 4.2229 0.4433 -6.6055 24 6 4.2556 -2.9679 1.4164 25 6 4.5354 -2.0779 2.4366 26 6 4.6627 -2.5334 3.7355 27 6 4.5192 -3.8800 4.0130 28 6 4.2447 -4.7706 2.9922 29 6 4.1131 -4.3146 1.6939 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0007 32 1 6.0110 -3.2178 -0.6897 33 1 6.0785 -1.5914 0.0304 34 1 4.4813 -1.4689 -2.2955 35 1 8.3908 -0.5750 -4.6732 36 1 3.3726 -1.4250 -4.0287 37 1 3.3776 0.3501 -3.8140 38 1 2.1795 0.3039 -5.8388 39 1 2.8906 -1.2693 -6.3321 40 1 4.0649 1.5208 -6.5603 41 1 4.2901 0.1099 -7.6410 42 1 4.6515 -1.0264 2.2192 43 1 4.8768 -1.8374 4.5332 44 1 4.6213 -4.2361 5.0275 45 1 4.1322 -5.8226 3.2091 46 1 3.8982 -5.0105 0.8963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732026034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:56 Heat of formation + Delta-G solvation = 57.454684 kcal Electronic energy + Delta-G solvation = -29474.010306 eV Core-core repulsion = 25557.308046 eV Total energy + Delta-G solvation = -3916.702260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.65743 -40.82362 -40.05072 -37.73879 -37.29605 -35.40125 -33.95904 -32.93592 -31.91016 -31.56370 -30.17541 -29.17346 -28.37872 -25.69444 -24.48942 -23.41641 -23.18780 -23.04265 -21.76495 -21.34036 -20.99834 -19.87238 -18.68537 -17.80274 -17.66241 -17.11761 -17.05345 -16.45698 -16.20916 -15.95600 -15.92636 -15.53585 -15.07904 -15.02512 -14.89834 -14.77254 -14.37821 -14.27350 -14.24306 -14.12660 -14.10754 -13.56953 -13.25580 -13.11972 -12.95122 -12.59403 -12.50350 -12.28976 -12.05616 -12.03429 -11.85039 -11.74459 -11.59863 -11.16436 -11.04086 -10.79868 -10.35683 -9.72255 -9.64285 -9.54957 -9.35324 -8.03227 -5.38474 0.15632 0.53584 0.60454 1.29592 1.35913 1.40425 1.45302 1.66937 1.98127 2.17730 2.42194 2.76945 2.95838 3.26938 3.33136 3.43325 3.56353 3.70203 3.86752 3.90149 4.06201 4.12157 4.25083 4.26897 4.29008 4.34249 4.36353 4.40651 4.49438 4.59575 4.71671 4.76224 4.80491 4.91270 4.92836 5.02450 5.07167 5.12433 5.24490 5.25029 5.49085 5.65541 5.68635 5.73616 5.80742 5.84944 6.19131 6.21628 6.27381 6.81643 6.93621 7.01677 7.74079 7.93853 9.17472 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.004093 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.080510 B = 6839.705740 C = 8623.325123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.041 4.041 3 Si 0.932 3.068 4 H -0.271 1.271 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.217 4.217 8 H 0.064 0.936 9 N -0.738 5.738 10 C 0.210 3.790 11 H 0.075 0.925 12 C 0.127 3.873 13 N -0.713 5.713 14 C 0.593 3.407 15 O -0.565 6.565 16 C -0.096 4.096 17 C 0.066 3.934 18 N -0.516 5.516 19 C 0.214 3.786 20 N -0.461 5.461 21 C 0.077 3.923 22 C -0.113 4.113 23 C -0.040 4.040 24 C -0.101 4.101 25 C -0.113 4.113 26 C -0.135 4.135 27 C -0.130 4.130 28 C -0.126 4.126 29 C -0.125 4.125 30 H 0.257 0.743 31 H 0.362 0.638 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.406 0.594 35 H 0.194 0.806 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.131 0.869 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 -4.396 -7.306 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.233 4.233 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.348 4.348 8 H 0.082 0.918 9 N -0.380 5.380 10 C 0.101 3.899 11 H 0.093 0.907 12 C 0.003 3.997 13 N -0.364 5.364 14 C 0.380 3.620 15 O -0.445 6.445 16 C -0.210 4.210 17 C -0.089 4.089 18 N -0.235 5.235 19 C -0.049 4.049 20 N -0.145 5.145 21 C -0.043 4.043 22 C -0.151 4.151 23 C -0.079 4.079 24 C -0.104 4.104 25 C -0.132 4.132 26 C -0.153 4.153 27 C -0.148 4.148 28 C -0.144 4.144 29 C -0.144 4.144 30 H 0.066 0.934 31 H 0.196 0.804 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.211 0.789 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.148 0.852 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.119 0.881 43 H 0.149 0.851 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.986 -4.464 -7.422 11.781 hybrid contribution -0.504 1.163 1.168 1.724 sum 7.482 -3.301 -6.253 10.294 Atomic orbital electron populations 1.69829 1.06687 1.26361 1.59429 1.25152 0.95589 0.99771 1.02823 0.85795 0.78219 0.81535 0.78376 1.19634 1.23020 1.19488 1.18877 0.81630 0.93371 1.40905 0.91769 1.42756 1.02801 1.02733 1.89721 1.19490 0.90421 0.88531 0.91450 0.90693 1.21597 0.96911 0.99032 0.82148 1.45940 1.09080 1.63318 1.18109 1.17055 0.84363 0.77498 0.83046 1.90794 1.26253 1.55508 1.71901 1.20809 0.86011 1.16794 0.97393 1.22813 0.99587 0.98076 0.88385 1.69825 1.05246 1.22949 1.25522 1.25520 0.93690 0.97838 0.87836 1.46768 1.07280 1.44623 1.15822 1.22964 0.73708 1.05035 1.02620 1.22837 0.98619 1.03929 0.89710 1.21073 0.83705 1.03092 1.00021 1.20704 0.98769 0.94088 0.96867 1.20961 0.99592 0.99048 0.93575 1.21363 1.00845 0.96873 0.96247 1.21414 1.00054 0.92994 1.00296 1.21419 0.99664 1.00812 0.92471 1.21273 1.00469 0.94671 0.97973 0.93356 0.80440 0.89504 0.92113 0.75710 0.78904 0.88365 0.89048 0.85203 0.87574 0.86539 0.85691 0.88112 0.85121 0.83804 0.83650 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.99 13.97 21.65 0.30 -56.69 16 2 C -0.04 -2.16 5.50 84.86 0.47 -1.70 16 3 Si 0.93 42.02 27.74 68.60 1.90 43.93 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.27 -11.61 6.52 99.48 0.65 -10.96 16 7 C -0.22 -10.83 10.40 84.03 0.87 -9.96 16 8 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 9 N -0.74 -30.04 3.62 -326.51 -1.18 -31.22 16 10 C 0.21 7.12 2.64 44.25 0.12 7.24 16 11 H 0.08 2.52 7.94 -2.39 -0.02 2.51 16 12 C 0.13 3.98 5.21 86.38 0.45 4.43 16 13 N -0.71 -22.44 5.38 -467.01 -2.51 -24.95 16 14 C 0.59 20.07 7.79 86.47 0.67 20.74 16 15 O -0.56 -21.81 16.90 -4.29 -0.07 -21.88 16 16 C -0.10 -2.98 7.08 39.94 0.28 -2.70 16 17 C 0.07 2.02 11.65 84.10 0.98 3.00 16 18 N -0.52 -15.31 11.21 -186.45 -2.09 -17.40 16 19 C 0.21 5.28 8.56 138.42 1.19 6.47 16 20 N -0.46 -12.10 3.58 -496.47 -1.78 -13.88 16 21 C 0.08 1.60 6.59 86.75 0.57 2.17 16 22 C -0.11 -1.37 7.18 31.59 0.23 -1.14 16 23 C -0.04 -0.55 6.86 30.68 0.21 -0.34 16 24 C -0.10 -3.38 4.92 -19.87 -0.10 -3.48 16 25 C -0.11 -3.89 9.32 22.27 0.21 -3.68 16 26 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 27 C -0.13 -3.29 10.05 22.27 0.22 -3.06 16 28 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 29 C -0.13 -3.61 9.67 22.27 0.22 -3.40 16 30 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.36 14.98 5.66 -92.71 -0.52 14.45 16 32 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.41 12.46 5.91 -92.71 -0.55 11.91 16 35 H 0.19 5.26 8.06 -2.91 -0.02 5.24 16 36 H 0.10 2.05 7.36 -2.39 -0.02 2.04 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.10 3.69 7.73 -2.91 -0.02 3.67 16 43 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 44 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 45 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 46 H 0.13 3.28 8.04 -2.91 -0.02 3.26 16 Total: -1.00 -70.88 384.87 1.49 -69.39 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: -0.12 Total: 44.79 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 7.03 Total: 7.91 kcal Atomic # 7 Polarization: -136.87 SS G_CDS: -7.26 Total: -144.13 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.07 Total: -21.88 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.90 Total: 43.93 kcal Total: -70.88 1.49 -69.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732026034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.848 kcal (2) G-P(sol) polarization free energy of solvation -70.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds