Wall clock time and date at job start Sat Apr 11 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 110.73210 * 2 1 4 4 C 1.34777 * 119.99677 * 56.59106 * 3 2 1 5 5 O 1.21586 * 120.00074 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99732 * 180.02562 * 4 3 2 7 7 C 1.40198 * 119.99611 * 180.02562 * 6 4 3 8 8 C 1.40395 * 125.97441 * 359.97438 * 7 6 4 9 9 C 1.35243 * 107.86535 * 179.76148 * 8 7 6 10 10 N 1.34960 * 107.86064 * 0.42509 * 9 8 7 11 11 C 1.46500 * 125.97985 * 179.83521 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71356 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 N 1.31213 * 125.96940 * 180.02562 * 7 6 4 21 21 C 1.54346 * 110.99220 * 123.52583 * 2 1 3 22 22 C 1.51375 * 105.16991 * 91.95766 * 21 2 1 23 23 C 1.38492 * 130.38712 * 197.19339 * 22 21 2 24 24 C 1.38104 * 120.21622 * 179.97438 * 23 22 21 25 25 C 1.38261 * 119.93150 * 0.02562 * 24 23 22 26 26 C 1.38094 * 119.93423 * 359.97438 * 25 24 23 27 27 C 1.38217 * 109.75818 * 17.18769 * 22 21 2 28 28 C 1.51365 * 109.75870 * 0.02562 * 27 22 21 29 29 H 1.09000 * 109.46854 * 60.70485 * 1 2 3 30 30 H 1.09009 * 109.47067 * 180.69666 * 1 2 3 31 31 H 1.09000 * 109.47235 * 300.70016 * 1 2 3 32 32 H 0.96998 * 119.99765 * 236.59826 * 3 2 1 33 33 H 0.96996 * 119.99913 * 359.97438 * 6 4 3 34 34 H 1.07994 * 126.06763 * 0.02745 * 8 7 6 35 35 H 1.08007 * 126.06985 * 180.26350 * 9 8 7 36 36 H 1.09004 * 109.47078 * 4.72118 * 11 10 9 37 37 H 1.08993 * 109.47364 * 244.71890 * 11 10 9 38 38 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 39 39 H 1.09003 * 110.30612 * 210.87626 * 21 2 1 40 40 H 1.08999 * 110.30153 * 333.03223 * 21 2 1 41 41 H 1.08007 * 119.89532 * 359.97438 * 23 22 21 42 42 H 1.07998 * 120.03438 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.02710 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.89397 * 179.97438 * 26 25 24 45 45 H 1.09004 * 110.29975 * 223.88402 * 28 27 22 46 46 H 1.08993 * 110.30208 * 101.73743 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0486 1.3701 0.0000 4 6 1.6860 2.2279 0.9744 5 8 0.9290 1.8643 1.8536 6 7 2.1627 3.4885 0.9741 7 6 1.7860 4.3805 1.9880 8 6 0.9237 4.0956 3.0587 9 6 0.8196 5.2114 3.8157 10 7 1.5772 6.1713 3.2447 11 6 1.7473 7.5404 3.7375 12 6 3.2147 7.8286 3.9239 13 1 3.9473 7.0681 3.6974 14 6 3.6220 9.0630 4.3835 15 7 2.7301 9.9909 4.6542 16 14 5.4410 9.4204 4.6138 17 1 5.6137 10.8102 5.1077 18 1 6.0111 8.4695 5.6017 19 1 6.1441 9.2657 3.3150 20 7 2.1770 5.6279 2.1015 21 6 2.0829 -0.7959 1.2013 22 6 2.2714 -2.2075 0.6882 23 6 2.4322 -3.3985 1.3765 24 6 2.5896 -4.5843 0.6864 25 6 2.5873 -4.5834 -0.6962 26 6 2.4271 -3.3968 -1.3843 27 6 2.2689 -2.2065 -0.6939 28 6 2.0793 -0.7942 -1.2043 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3634 -1.0277 0.0125 31 1 -0.3634 0.5247 0.8836 32 1 2.6528 1.6600 -0.7013 33 1 2.7670 3.7783 0.2729 34 1 0.4343 3.1515 3.2470 35 1 0.2320 5.3166 4.7159 36 1 1.2316 7.6498 4.6916 37 1 1.3282 8.2411 3.0156 38 1 1.7856 9.8054 4.5344 39 1 3.0376 -0.3800 1.5234 40 1 1.3677 -0.7847 2.0238 41 1 2.4345 -3.4000 2.4566 42 1 2.7152 -5.5113 1.2261 43 1 2.7099 -5.5099 -1.2375 44 1 2.4258 -3.3968 -2.4643 45 1 1.3612 -0.7817 -2.0243 46 1 3.0329 -0.3783 -1.5293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121404607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:21 Heat of formation + Delta-G solvation = 81.180783 kcal Electronic energy + Delta-G solvation = -28172.739597 eV Core-core repulsion = 24257.066178 eV Total energy + Delta-G solvation = -3915.673419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17701 -40.52058 -39.43871 -36.95815 -34.74132 -33.79304 -33.20797 -31.75268 -30.90756 -29.77152 -29.29693 -27.73278 -26.70823 -26.17880 -23.42957 -22.55970 -21.83668 -21.37429 -20.72135 -19.86285 -19.80466 -18.03551 -17.17207 -16.88291 -16.59918 -15.97723 -15.69532 -15.37603 -15.21542 -14.89652 -14.43333 -14.10981 -13.97729 -13.78927 -13.64519 -13.44373 -13.20395 -13.04348 -12.91950 -12.44461 -12.33925 -12.28353 -12.10344 -11.80948 -11.54609 -11.51070 -11.22112 -11.15577 -11.09676 -10.81040 -10.40896 -10.16130 -10.04250 -9.64324 -9.34297 -9.11815 -8.97892 -8.81805 -8.57556 -8.16964 -7.46492 -6.57330 -4.31288 1.02887 1.07963 2.29334 2.59804 3.04977 3.37840 3.39533 3.43546 3.47653 3.59098 3.77168 3.95292 4.15628 4.35775 4.41901 4.60502 4.64744 4.71698 4.74280 4.82534 5.16144 5.16589 5.25057 5.29185 5.37496 5.42365 5.53507 5.57538 5.62721 5.68404 5.73403 5.80810 5.92698 6.09704 6.15840 6.16766 6.19936 6.33308 6.37584 6.45958 6.48909 6.66861 6.69088 6.78344 6.97463 7.43706 7.64236 7.85952 7.91339 8.35439 8.56456 8.57243 8.64621 9.36850 10.80094 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.001934 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.137672 B =14477.597440 C =14850.311966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.200 3.800 3 N -0.736 5.736 4 C 0.716 3.284 5 O -0.561 6.561 6 N -0.644 5.644 7 C 0.278 3.722 8 C -0.283 4.283 9 C 0.049 3.951 10 N -0.319 5.319 11 C 0.250 3.750 12 C -0.607 4.607 13 H 0.063 0.937 14 C 0.022 3.978 15 N -0.905 5.905 16 Si 1.077 2.923 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.285 1.285 20 N -0.306 5.306 21 C -0.087 4.087 22 C -0.086 4.086 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.105 4.105 27 C -0.097 4.097 28 C -0.082 4.082 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.406 0.594 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.267 0.733 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.085 0.915 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -27.260 -12.481 30.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.113 3.887 3 N -0.392 5.392 4 C 0.416 3.584 5 O -0.436 6.436 6 N -0.294 5.294 7 C 0.024 3.976 8 C -0.314 4.314 9 C -0.100 4.100 10 N -0.101 5.101 11 C 0.131 3.869 12 C -0.645 4.645 13 H 0.081 0.919 14 C -0.182 4.182 15 N -0.540 5.540 16 Si 0.904 3.096 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.212 1.212 20 N -0.137 5.137 21 C -0.125 4.125 22 C -0.087 4.087 23 C -0.125 4.125 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.123 4.123 27 C -0.097 4.097 28 C -0.120 4.120 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.241 0.759 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.104 0.896 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.202 -25.350 -11.661 27.930 hybrid contribution -0.871 -1.563 -0.833 1.974 sum -2.073 -26.914 -12.494 29.745 Atomic orbital electron populations 1.22181 0.92742 1.02545 1.04154 1.20623 0.94425 0.79335 0.94313 1.45117 1.52934 1.11647 1.29493 1.15587 0.80769 0.79706 0.82379 1.90821 1.38697 1.76483 1.37615 1.41415 1.50428 1.09514 1.28039 1.18778 0.98276 0.89648 0.90913 1.21518 1.10255 1.01219 0.98440 1.22558 0.98237 0.89323 0.99906 1.48747 1.32552 1.11651 1.17119 1.19744 0.99791 0.73271 0.94057 1.22102 0.90648 1.02438 1.49331 0.91873 1.25921 1.07241 0.91855 0.93227 1.70851 1.02754 1.35236 1.45202 0.83420 0.73209 0.76256 0.76741 1.20537 1.21247 1.21166 1.77344 1.22519 1.07072 1.06743 1.21472 1.02409 0.89985 0.98635 1.20588 0.98896 0.94944 0.94243 1.20676 1.00400 0.91399 1.00025 1.21060 1.00393 0.97784 0.94411 1.21023 1.00996 0.97730 0.94418 1.20590 1.00645 0.91369 0.99701 1.20360 1.00692 0.94340 0.94304 1.21284 1.01971 0.91202 0.97503 0.92425 0.91755 0.89171 0.76813 0.75897 0.81980 0.81606 0.93647 0.94827 0.92279 0.89722 0.89224 0.86099 0.85908 0.85941 0.86248 0.89634 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.35 37.16 0.31 -1.25 16 2 C 0.20 1.82 0.90 -130.40 -0.12 1.70 16 3 N -0.74 -7.03 5.13 -51.09 -0.26 -7.29 16 4 C 0.72 9.93 8.05 -86.92 -0.70 9.23 16 5 O -0.56 -9.30 10.88 5.29 0.06 -9.24 16 6 N -0.64 -9.74 5.46 -15.51 -0.08 -9.82 16 7 C 0.28 5.55 8.11 -154.36 -1.25 4.30 16 8 C -0.28 -5.58 9.61 -39.84 -0.38 -5.97 16 9 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 10 N -0.32 -7.48 3.67 -62.56 -0.23 -7.71 16 11 C 0.25 6.34 5.57 -5.19 -0.03 6.31 16 12 C -0.61 -17.12 9.24 -34.44 -0.32 -17.44 16 13 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 14 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 15 N -0.90 -26.40 13.65 55.43 0.76 -25.64 16 16 Si 1.08 24.97 29.90 -169.99 -5.08 19.89 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 N -0.31 -7.08 12.42 31.44 0.39 -6.69 16 21 C -0.09 -0.88 5.23 -26.85 -0.14 -1.03 16 22 C -0.09 -0.81 6.14 -104.20 -0.64 -1.45 16 23 C -0.11 -0.93 10.04 -39.54 -0.40 -1.33 16 24 C -0.12 -0.89 10.05 -39.62 -0.40 -1.29 16 25 C -0.12 -0.88 10.05 -39.63 -0.40 -1.28 16 26 C -0.10 -0.78 10.04 -39.54 -0.40 -1.18 16 27 C -0.10 -0.81 6.14 -104.21 -0.64 -1.45 16 28 C -0.08 -0.58 5.96 -26.84 -0.16 -0.74 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.09 1.13 6.02 -51.93 -0.31 0.82 16 32 H 0.40 2.65 8.35 -40.82 -0.34 2.31 16 33 H 0.41 4.97 8.84 -40.82 -0.36 4.61 16 34 H 0.16 3.10 5.91 -52.49 -0.31 2.79 16 35 H 0.17 2.72 8.06 -52.48 -0.42 2.30 16 36 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 37 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 38 H 0.27 7.62 7.22 -40.82 -0.29 7.32 16 39 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 41 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.09 0.51 7.91 -51.93 -0.41 0.10 16 46 H 0.09 0.51 7.83 -51.93 -0.41 0.10 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -33.87 381.14 -10.92 -44.79 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.26 Total: 7.50 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -5.95 Total: -11.54 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.57 Total: -57.15 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.06 Total: -9.24 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.87 -10.92 -44.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121404607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.975 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds