Wall clock time and date at job start Sat Apr 11 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99949 * 2 1 4 4 H 1.48499 * 109.47259 * 269.99852 * 3 2 1 5 5 H 1.48491 * 109.47221 * 30.00695 * 3 2 1 6 6 H 1.48507 * 109.46517 * 150.00476 * 3 2 1 7 7 C 1.37876 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99815 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00055 * 87.41459 * 10 9 7 12 12 C 1.50703 * 109.46723 * 90.00261 * 11 10 9 13 13 C 1.38221 * 119.62027 * 95.00124 * 12 11 10 14 14 C 1.38635 * 119.16012 * 180.02562 * 13 12 11 15 15 C 1.38672 * 118.42152 * 0.02562 * 14 13 12 16 16 C 1.38190 * 119.16100 * 359.97438 * 15 14 13 17 17 N 1.31853 * 119.61525 * 275.01377 * 12 11 10 18 18 C 1.34779 * 120.00276 * 267.41376 * 10 9 7 19 19 O 1.21277 * 120.00469 * 185.22624 * 18 10 9 20 20 C 1.50709 * 119.99667 * 5.22978 * 18 10 9 21 21 H 1.09005 * 109.49601 * 330.64713 * 20 18 10 22 22 C 1.53115 * 109.49699 * 210.54969 * 20 18 10 23 23 C 1.53274 * 109.71366 * 170.15040 * 22 20 18 24 24 N 1.46474 * 108.69646 * 50.74823 * 23 22 20 25 25 C 1.34410 * 128.43884 * 162.64240 * 24 23 22 26 26 N 1.30782 * 108.54802 * 180.20623 * 25 24 23 27 27 C 1.34430 * 109.32688 * 359.94273 * 26 25 24 28 28 C 1.33864 * 107.79455 * 359.97438 * 27 26 25 29 29 C 1.50706 * 128.68315 * 180.08412 * 28 27 26 30 30 H 0.97007 * 120.00103 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47163 * 60.00431 * 9 7 2 32 32 H 1.08999 * 109.47304 * 300.00257 * 9 7 2 33 33 H 1.08995 * 109.47210 * 330.00068 * 11 10 9 34 34 H 1.09004 * 109.46663 * 209.99729 * 11 10 9 35 35 H 1.08002 * 120.42334 * 0.04240 * 13 12 11 36 36 H 1.07995 * 120.78978 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.41814 * 180.02562 * 15 14 13 38 38 H 1.07996 * 119.61117 * 179.71719 * 16 15 14 39 39 H 1.09007 * 109.42771 * 290.21309 * 22 20 18 40 40 H 1.09000 * 109.43246 * 50.06563 * 22 20 18 41 41 H 1.08994 * 109.57908 * 290.99599 * 23 22 20 42 42 H 1.09000 * 109.74427 * 170.60343 * 23 22 20 43 43 H 1.08000 * 125.72744 * 0.18827 * 25 24 23 44 44 H 1.07992 * 126.10388 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.74207 * 44.62343 * 29 28 27 46 46 H 1.08999 * 109.78582 * 283.93297 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.7224 -4.1323 1.2669 12 6 1.8216 -5.2328 1.7655 13 6 2.1280 -6.5495 1.4775 14 6 1.2924 -7.5543 1.9404 15 6 0.1747 -7.1954 2.6786 16 6 -0.0671 -5.8577 2.9270 17 7 0.7502 -4.9285 2.4712 18 6 2.6008 -4.1591 -1.1665 19 8 3.3137 -5.1403 -1.1644 20 6 2.1598 -3.5509 -2.4730 21 1 1.1893 -3.0722 -2.3422 22 6 2.0504 -4.6474 -3.5361 23 6 1.3723 -4.0856 -4.7906 24 7 2.0514 -2.8464 -5.1764 25 6 2.0093 -2.2028 -6.3556 26 7 2.7645 -1.1381 -6.2755 27 6 3.3081 -1.0694 -5.0479 28 6 2.8738 -2.1250 -4.3486 29 6 3.1890 -2.5060 -2.9250 30 1 -0.4851 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6245 -2.5571 0.8896 33 1 2.7558 -3.3287 2.0026 34 1 3.7270 -4.5265 1.1134 35 1 3.0072 -6.7926 0.8993 36 1 1.5069 -8.5918 1.7311 37 1 -0.4977 -7.9519 3.0554 38 1 -0.9379 -5.5698 3.4972 39 1 3.0479 -5.0047 -3.7924 40 1 1.4593 -5.4750 -3.1440 41 1 0.3241 -3.8767 -4.5767 42 1 1.4426 -4.8092 -5.6026 43 1 1.4466 -2.5130 -7.2236 44 1 3.9752 -0.2995 -4.6896 45 1 3.1259 -1.6255 -2.2856 46 1 4.1916 -2.9299 -2.8698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349434249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:04 Heat of formation + Delta-G solvation = 46.335447 kcal Electronic energy + Delta-G solvation = -30046.994699 eV Core-core repulsion = 26129.810273 eV Total energy + Delta-G solvation = -3917.184427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.24934 -41.42940 -40.56933 -37.31734 -36.78421 -34.71248 -34.04781 -33.34865 -32.69076 -31.44807 -29.45525 -29.07514 -27.58790 -25.51855 -24.97365 -24.31750 -23.85219 -22.73873 -22.33163 -20.34895 -19.70513 -18.60449 -18.14013 -18.08550 -17.69307 -17.19391 -16.93021 -16.67939 -16.44079 -16.20603 -15.87427 -15.12337 -14.96024 -14.88873 -14.78612 -14.56009 -14.32589 -14.21445 -14.08154 -14.02119 -13.79459 -13.47178 -13.14112 -12.96097 -12.85729 -12.71572 -12.65677 -12.59301 -12.14197 -11.98762 -11.84540 -11.66865 -11.00566 -10.81105 -10.72320 -10.54173 -10.40525 -10.35433 -9.92802 -9.49963 -9.27203 -8.18506 -6.30658 0.14903 0.41040 1.15502 1.41504 1.44340 1.51286 1.65281 1.92559 2.19237 2.23223 2.43157 2.98590 3.13711 3.36423 3.44721 3.60701 3.69050 3.80449 3.84834 3.99004 4.03239 4.07387 4.20753 4.23437 4.27644 4.31262 4.44567 4.48735 4.58774 4.61103 4.70181 4.74510 4.79018 4.88244 4.90171 4.94044 5.02674 5.13536 5.25693 5.27836 5.29295 5.44001 5.63065 5.77402 5.78182 5.83702 6.06695 6.39339 6.54778 6.81656 7.12688 7.14066 7.24520 7.41154 8.87593 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009130 B = 0.004630 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.910982 B = 6045.496737 C = 8295.783318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.026 3.974 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.260 3.740 10 N -0.586 5.586 11 C 0.168 3.832 12 C 0.095 3.905 13 C -0.158 4.158 14 C -0.079 4.079 15 C -0.164 4.164 16 C 0.078 3.922 17 N -0.507 5.507 18 C 0.523 3.477 19 O -0.576 6.576 20 C -0.101 4.101 21 H 0.085 0.915 22 C -0.107 4.107 23 C 0.106 3.894 24 N -0.457 5.457 25 C 0.188 3.812 26 N -0.535 5.535 27 C -0.050 4.050 28 C -0.017 4.017 29 C -0.025 4.025 30 H 0.264 0.736 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.134 0.866 43 H 0.246 0.754 44 H 0.167 0.833 45 H 0.088 0.912 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 -15.382 -3.288 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.175 4.175 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.139 3.861 10 N -0.315 5.315 11 C 0.044 3.956 12 C -0.043 4.043 13 C -0.178 4.178 14 C -0.105 4.105 15 C -0.184 4.184 16 C -0.079 4.079 17 N -0.217 5.217 18 C 0.312 3.688 19 O -0.458 6.458 20 C -0.122 4.122 21 H 0.103 0.897 22 C -0.145 4.145 23 C -0.015 4.015 24 N -0.141 5.141 25 C -0.095 4.095 26 N -0.254 5.254 27 C -0.197 4.197 28 C -0.132 4.132 29 C -0.064 4.064 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.155 0.845 36 H 0.183 0.817 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.152 0.848 43 H 0.261 0.739 44 H 0.184 0.816 45 H 0.106 0.894 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.104 -14.437 -3.695 14.903 hybrid contribution 0.198 0.177 0.857 0.897 sum 0.302 -14.260 -2.838 14.542 Atomic orbital electron populations 1.70019 1.07279 1.27826 1.50783 1.25551 0.95369 1.01983 0.94553 0.85739 0.78969 0.79822 0.78378 1.20077 1.21156 1.19057 1.21588 0.93347 0.91051 1.51170 0.92205 1.19043 0.87350 0.82814 0.96855 1.48146 1.44750 1.33893 1.04697 1.20158 0.95302 0.94282 0.85861 1.21614 0.93608 0.94364 0.94715 1.22158 1.01976 0.93111 1.00590 1.21985 0.93220 1.00779 0.94479 1.22513 0.98782 0.97725 0.99367 1.23250 0.97916 0.89830 0.96909 1.67494 1.04160 1.39967 1.10066 1.20574 0.79601 0.82852 0.85755 1.90557 1.39960 1.27213 1.88076 1.21299 1.01039 0.97302 0.92573 0.89725 1.21659 1.02898 0.97008 0.92897 1.22251 0.96814 0.83603 0.98799 1.45601 1.35836 1.21233 1.11407 1.25523 1.02139 0.90954 0.90850 1.70417 1.13762 1.20419 1.20815 1.21943 1.06193 1.00123 0.91392 1.21072 1.00767 0.96664 0.94700 1.19989 0.97979 0.99046 0.89386 0.92655 0.95888 0.96431 0.90152 0.88685 0.84544 0.81656 0.81164 0.81119 0.90333 0.88593 0.88695 0.84817 0.73854 0.81577 0.89411 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.55 13.29 21.45 0.28 -51.26 16 2 C 0.03 1.36 5.46 84.65 0.46 1.82 16 3 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.53 -27.13 8.05 25.60 0.21 -26.92 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.26 12.44 4.97 85.64 0.43 12.86 16 10 N -0.59 -23.95 2.44 -830.49 -2.03 -25.97 16 11 C 0.17 6.30 5.69 85.63 0.49 6.79 16 12 C 0.09 3.29 6.36 42.55 0.27 3.56 16 13 C -0.16 -4.52 9.72 22.36 0.22 -4.31 16 14 C -0.08 -1.70 10.18 22.47 0.23 -1.47 16 15 C -0.16 -3.35 10.11 22.36 0.23 -3.13 16 16 C 0.08 2.10 11.18 84.67 0.95 3.05 16 17 N -0.51 -18.10 10.27 -183.89 -1.89 -19.99 16 18 C 0.52 19.86 6.67 87.66 0.58 20.44 16 19 O -0.58 -22.31 15.75 -3.02 -0.05 -22.36 16 20 C -0.10 -3.42 2.04 -11.34 -0.02 -3.44 16 21 H 0.08 3.26 5.72 -2.38 -0.01 3.24 16 22 C -0.11 -2.70 4.68 30.72 0.14 -2.56 16 23 C 0.11 2.13 7.00 86.48 0.61 2.74 16 24 N -0.46 -12.48 3.13 -514.88 -1.61 -14.10 16 25 C 0.19 4.92 12.66 180.38 2.28 7.21 16 26 N -0.53 -18.18 11.27 -200.97 -2.26 -20.44 16 27 C -0.05 -1.78 11.84 83.30 0.99 -0.79 16 28 C -0.02 -0.57 6.57 40.73 0.27 -0.30 16 29 C -0.03 -0.89 5.61 30.01 0.17 -0.72 16 30 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 31 H 0.02 1.17 5.77 -2.39 -0.01 1.15 16 32 H 0.02 0.94 8.09 -2.39 -0.02 0.92 16 33 H 0.08 3.21 8.07 -2.39 -0.02 3.19 16 34 H 0.09 3.32 7.40 -2.38 -0.02 3.30 16 35 H 0.14 3.87 7.81 -2.91 -0.02 3.84 16 36 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 39 H 0.08 2.06 8.10 -2.38 -0.02 2.04 16 40 H 0.10 2.24 8.11 -2.39 -0.02 2.22 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.25 3.80 8.06 -2.91 -0.02 3.78 16 44 H 0.17 5.56 8.06 -2.91 -0.02 5.53 16 45 H 0.09 3.56 6.65 -2.39 -0.02 3.54 16 46 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 Total: -1.00 -69.97 382.26 3.95 -66.02 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.99 Total: 28.76 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 8.49 Total: 14.83 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -7.51 Total: -131.76 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -69.97 3.95 -66.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349434249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.358 kcal (2) G-P(sol) polarization free energy of solvation -69.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds