Wall clock time and date at job start Sat Apr 11 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00016 * 2 1 4 4 H 1.48502 * 109.47167 * 240.00503 * 3 2 1 5 5 H 1.48501 * 109.46650 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47033 * 120.00536 * 3 2 1 7 7 C 1.37877 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00268 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00149 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47269 * 184.16605 * 9 7 2 11 11 C 1.46899 * 110.99667 * 293.62849 * 10 9 7 12 12 C 1.53006 * 109.47102 * 160.76610 * 11 10 9 13 13 C 1.50707 * 109.47169 * 185.12487 * 12 11 10 14 14 O 1.21291 * 119.99927 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00035 * 180.02562 * 13 12 11 16 16 C 1.39943 * 120.00135 * 174.92033 * 15 13 12 17 17 C 1.39289 * 120.48799 * 326.52073 * 16 15 13 18 18 C 1.38501 * 118.36099 * 179.76010 * 17 16 15 19 19 C 1.38271 * 119.23599 * 0.53974 * 18 17 16 20 20 N 1.31858 * 120.92015 * 359.69726 * 19 18 17 21 21 C 1.31819 * 121.79698 * 0.02667 * 20 19 18 22 22 C 1.46901 * 111.00126 * 169.67766 * 10 9 7 23 23 C 1.50696 * 109.47208 * 293.94993 * 22 10 9 24 24 C 1.38230 * 119.61687 * 95.01794 * 23 22 10 25 25 C 1.38631 * 119.15736 * 179.97438 * 24 23 22 26 26 C 1.38672 * 118.42401 * 0.02562 * 25 24 23 27 27 C 1.38179 * 119.15932 * 359.97438 * 26 25 24 28 28 N 1.31859 * 119.61906 * 275.00209 * 23 22 10 29 29 H 0.96995 * 120.00599 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47023 * 64.16334 * 9 7 2 31 31 H 1.09001 * 109.46943 * 304.16361 * 9 7 2 32 32 H 1.09002 * 109.47438 * 280.76643 * 11 10 9 33 33 H 1.09000 * 109.47220 * 40.76766 * 11 10 9 34 34 H 1.08999 * 109.47419 * 305.12667 * 12 11 10 35 35 H 1.09000 * 109.47203 * 65.12697 * 12 11 10 36 36 H 0.97007 * 119.99885 * 354.91506 * 15 13 12 37 37 H 1.07999 * 120.81753 * 0.02562 * 17 16 15 38 38 H 1.07999 * 120.38362 * 180.26231 * 18 17 16 39 39 H 1.08004 * 119.54329 * 179.72683 * 19 18 17 40 40 H 1.07999 * 119.67039 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46879 * 173.95081 * 22 10 9 42 42 H 1.09004 * 109.47247 * 53.95122 * 22 10 9 43 43 H 1.07991 * 120.41866 * 359.96341 * 24 23 22 44 44 H 1.08002 * 120.78507 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.41851 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.61600 * 180.27599 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2025 -3.6139 0.0995 11 6 3.0394 -3.7012 -1.1047 12 6 4.2958 -4.5176 -0.7945 13 6 5.2131 -4.5017 -1.9901 14 8 4.8932 -3.8974 -2.9919 15 7 6.3884 -5.1599 -1.9466 16 6 7.1912 -5.2348 -3.0903 17 6 6.6137 -5.2980 -4.3562 18 6 7.4499 -5.3659 -5.4582 19 6 8.8193 -5.3800 -5.2670 20 7 9.3347 -5.3238 -4.0547 21 6 8.5752 -5.2529 -2.9796 22 6 1.5037 -4.8819 0.3479 23 6 0.8560 -4.8404 1.7080 24 6 -0.4697 -4.4660 1.8222 25 6 -1.0561 -4.4316 3.0779 26 6 -0.2836 -4.7762 4.1768 27 6 1.0355 -5.1402 3.9849 28 7 1.5604 -5.1620 2.7753 29 1 -0.4851 0.8399 0.0004 30 1 0.6812 -2.5897 -0.9253 31 1 0.5700 -2.5255 0.8501 32 1 2.4782 -4.1872 -1.9028 33 1 3.3266 -2.6985 -1.4211 34 1 4.8091 -4.0827 0.0631 35 1 4.0140 -5.5455 -0.5663 36 1 6.6778 -5.5817 -1.1223 37 1 5.5404 -5.2900 -4.4758 38 1 7.0372 -5.4119 -6.4552 39 1 9.4759 -5.4373 -6.1226 40 1 9.0340 -5.2089 -2.0029 41 1 2.2184 -5.7040 0.3108 42 1 0.7388 -5.0307 -0.4144 43 1 -1.0413 -4.2034 0.9443 44 1 -2.0901 -4.1434 3.1974 45 1 -0.7076 -4.7601 5.1699 46 1 1.6426 -5.4143 4.8351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361833713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:10 Heat of formation + Delta-G solvation = 46.530946 kcal Electronic energy + Delta-G solvation = -28229.213823 eV Core-core repulsion = 24312.037874 eV Total energy + Delta-G solvation = -3917.175949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89455 -39.86619 -39.26057 -36.83756 -35.14958 -32.74862 -32.43846 -32.15686 -31.88445 -30.72323 -29.48467 -27.48680 -25.45253 -24.13761 -23.71337 -23.19951 -22.50284 -21.86010 -20.47394 -19.79993 -18.03173 -17.15788 -16.99024 -16.64957 -16.38864 -16.05497 -15.90573 -15.42634 -15.04541 -14.74866 -14.53835 -14.39852 -14.02471 -13.98133 -13.64945 -13.26236 -13.08642 -13.04490 -12.77465 -12.55308 -12.31752 -12.17922 -11.89761 -11.57437 -11.27595 -11.01578 -10.99239 -10.75562 -10.61895 -10.32832 -10.17317 -9.90181 -9.84443 -9.53337 -9.44241 -9.19826 -9.05217 -8.62238 -8.46176 -8.42672 -7.35880 -6.04026 -4.04189 0.87167 1.12942 1.45503 1.65460 2.59001 2.86634 3.34537 3.37598 3.41559 3.68123 4.08096 4.31402 4.43669 4.57752 4.65475 4.70678 4.80947 4.94139 5.02263 5.12100 5.17338 5.19894 5.31888 5.37217 5.39014 5.41351 5.47633 5.61479 5.77914 5.86021 5.88063 5.89532 6.00662 6.04840 6.10076 6.13357 6.35862 6.46338 6.52257 6.60977 6.72461 7.03257 7.18140 7.22500 7.26948 7.75674 7.76803 7.99238 8.07491 8.13461 8.39317 8.48653 9.01333 9.59454 11.06928 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009264 B = 0.002911 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.792638 B = 9615.973437 C =11832.712292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.190 3.810 10 N -0.527 5.527 11 C 0.078 3.922 12 C -0.133 4.133 13 C 0.516 3.484 14 O -0.514 6.514 15 N -0.676 5.676 16 C 0.107 3.893 17 C -0.082 4.082 18 C -0.150 4.150 19 C 0.072 3.928 20 N -0.468 5.468 21 C 0.071 3.929 22 C 0.100 3.900 23 C 0.153 3.847 24 C -0.153 4.153 25 C -0.077 4.077 26 C -0.184 4.184 27 C 0.092 3.908 28 N -0.469 5.469 29 H 0.261 0.739 30 H -0.011 1.011 31 H 0.041 0.959 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.414 0.586 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.671 -15.446 -0.792 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.252 5.252 11 C -0.051 4.051 12 C -0.173 4.173 13 C 0.305 3.695 14 O -0.387 6.387 15 N -0.323 5.323 16 C 0.010 3.990 17 C -0.110 4.110 18 C -0.171 4.171 19 C -0.086 4.086 20 N -0.176 5.176 21 C -0.089 4.089 22 C -0.029 4.029 23 C 0.015 3.985 24 C -0.173 4.173 25 C -0.103 4.103 26 C -0.204 4.204 27 C -0.065 4.065 28 N -0.179 5.179 29 H 0.071 0.929 30 H 0.007 0.993 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.251 0.749 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.277 -15.024 -1.084 17.690 hybrid contribution -1.894 1.037 -0.100 2.162 sum 7.383 -13.986 -1.184 15.860 Atomic orbital electron populations 1.69928 1.05997 1.26853 1.51004 1.24932 0.94843 0.99184 0.95367 0.86606 0.79541 0.82873 0.78722 1.20177 1.21330 1.20207 1.21085 0.93415 0.89908 1.50074 0.91980 1.19836 0.90425 0.87104 0.96081 1.62048 1.24407 1.02423 1.36312 1.21714 0.91356 1.01380 0.90629 1.21731 0.96780 1.03168 0.95625 1.21306 0.80897 0.76786 0.90514 1.90736 1.73391 1.40702 1.33886 1.43685 1.20699 1.55434 1.12484 1.18878 0.91592 1.00460 0.88119 1.21673 1.01847 0.96546 0.90926 1.22086 0.94598 1.00632 0.99765 1.22683 0.93315 0.97820 0.94739 1.67619 1.39811 1.11294 0.98856 1.22596 0.88390 0.99724 0.98223 1.20958 0.96797 0.94813 0.90346 1.21076 0.90079 0.92860 0.94534 1.22032 0.96538 1.00057 0.98702 1.21503 1.00139 0.96097 0.92530 1.22022 0.96136 1.02733 0.99504 1.22635 0.92855 0.96251 0.94748 1.67432 1.37845 1.14032 0.98568 0.92912 0.99328 0.94122 0.95223 0.88342 0.87454 0.89028 0.74941 0.83649 0.84496 0.82727 0.82592 0.90374 0.94159 0.84964 0.85277 0.85469 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.09 8.33 -34.44 -0.29 -14.38 16 8 H 0.06 1.72 7.17 -52.49 -0.38 1.35 16 9 C 0.19 4.78 4.53 -4.98 -0.02 4.75 16 10 N -0.53 -10.76 4.42 -237.51 -1.05 -11.80 16 11 C 0.08 1.44 4.16 -3.82 -0.02 1.43 16 12 C -0.13 -1.82 5.73 -27.88 -0.16 -1.98 16 13 C 0.52 7.18 7.59 -10.98 -0.08 7.09 16 14 O -0.51 -9.14 13.65 5.55 0.08 -9.06 16 15 N -0.68 -7.14 5.35 -9.76 -0.05 -7.19 16 16 C 0.11 1.24 6.30 -83.54 -0.53 0.71 16 17 C -0.08 -0.99 8.77 -39.09 -0.34 -1.33 16 18 C -0.15 -1.52 10.10 -39.47 -0.40 -1.91 16 19 C 0.07 0.72 11.18 -17.53 -0.20 0.53 16 20 N -0.47 -5.47 10.35 -13.09 -0.14 -5.61 16 21 C 0.07 0.76 11.12 -17.33 -0.19 0.57 16 22 C 0.10 1.71 5.12 -4.98 -0.03 1.69 16 23 C 0.15 2.71 5.67 -82.59 -0.47 2.24 16 24 C -0.15 -2.58 8.11 -39.44 -0.32 -2.90 16 25 C -0.08 -1.12 10.18 -39.28 -0.40 -1.52 16 26 C -0.18 -2.46 10.11 -39.44 -0.40 -2.86 16 27 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 28 N -0.47 -8.09 10.27 -9.47 -0.10 -8.19 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 31 H 0.04 1.09 5.83 -51.93 -0.30 0.78 16 32 H 0.03 0.54 8.01 -51.93 -0.42 0.13 16 33 H 0.10 2.16 6.33 -51.93 -0.33 1.83 16 34 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.09 1.04 6.93 -51.93 -0.36 0.68 16 36 H 0.41 2.91 8.82 -40.82 -0.36 2.55 16 37 H 0.15 1.91 6.53 -52.49 -0.34 1.57 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.08 1.17 6.69 -51.93 -0.35 0.82 16 42 H 0.04 0.67 8.02 -51.93 -0.42 0.25 16 43 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 44 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -34.68 387.12 -10.03 -44.71 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.19 Total: 5.19 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -4.13 Total: -5.17 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.60 Total: -58.42 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.68 -10.03 -44.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361833713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.243 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds