Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48502 * 109.47349 * 270.00451 * 3 2 1 5 5 H 1.48501 * 109.47034 * 30.00282 * 3 2 1 6 6 H 1.48500 * 109.47118 * 150.00527 * 3 2 1 7 7 C 1.37873 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00300 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47359 * 180.02562 * 9 7 2 11 11 C 1.46493 * 120.00337 * 95.15275 * 10 9 7 12 12 C 1.50705 * 109.47018 * 269.99925 * 11 10 9 13 13 C 1.38226 * 119.61972 * 94.99581 * 12 11 10 14 14 C 1.38624 * 119.16357 * 180.02562 * 13 12 11 15 15 C 1.38674 * 118.42216 * 0.02562 * 14 13 12 16 16 C 1.38185 * 119.15865 * 0.02562 * 15 14 13 17 17 N 1.31863 * 119.61930 * 275.29185 * 12 11 10 18 18 C 1.34783 * 120.00054 * 275.14915 * 10 9 7 19 19 O 1.21274 * 120.00339 * 174.77549 * 18 10 9 20 20 C 1.50696 * 119.99733 * 354.77822 * 18 10 9 21 21 H 1.09001 * 109.47503 * 34.66001 * 20 18 10 22 22 C 1.53151 * 109.46908 * 274.66964 * 20 18 10 23 23 C 1.53401 * 109.23955 * 170.50389 * 22 20 18 24 24 C 1.51032 * 108.21103 * 48.82175 * 23 22 20 25 25 N 1.30093 * 127.39247 * 164.06058 * 24 23 22 26 26 C 1.34291 * 109.21323 * 180.08183 * 25 24 23 27 27 C 1.34856 * 108.07164 * 359.96641 * 26 25 24 28 28 N 1.35423 * 123.98189 * 344.06281 * 24 23 22 29 29 C 1.46469 * 124.82328 * 359.85117 * 28 24 23 30 30 H 0.96998 * 119.99706 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46781 * 60.00092 * 9 7 2 32 32 H 1.09001 * 109.47032 * 300.00834 * 9 7 2 33 33 H 1.08999 * 109.47414 * 149.99841 * 11 10 9 34 34 H 1.09001 * 109.47396 * 29.99820 * 11 10 9 35 35 H 1.07999 * 120.41929 * 0.04775 * 13 12 11 36 36 H 1.08002 * 120.79518 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.42225 * 180.02562 * 15 14 13 38 38 H 1.08009 * 119.61518 * 179.97438 * 16 15 14 39 39 H 1.08996 * 109.51013 * 290.43402 * 22 20 18 40 40 H 1.09005 * 109.50711 * 50.52758 * 22 20 18 41 41 H 1.09005 * 109.71184 * 168.50563 * 23 22 20 42 42 H 1.09004 * 109.71006 * 289.13824 * 23 22 20 43 43 H 1.08003 * 125.96514 * 179.97438 * 26 25 24 44 44 H 1.08004 * 126.65131 * 179.97438 * 27 26 25 45 45 H 1.09005 * 109.58085 * 223.09653 * 29 28 24 46 46 H 1.08998 * 109.58513 * 102.68658 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.5926 -4.2434 1.2630 12 6 3.8017 -3.5401 1.8238 13 6 3.6351 -2.5333 2.7562 14 6 4.7538 -1.8924 3.2654 15 6 6.0040 -2.2894 2.8155 16 6 6.0924 -3.3032 1.8806 17 7 5.0061 -3.8883 1.4151 18 6 2.7207 -4.0567 -1.1631 19 8 3.5789 -4.9136 -1.1567 20 6 2.2330 -3.4885 -2.4708 21 1 1.9951 -2.4326 -2.3420 22 6 0.9780 -4.2433 -2.9190 23 6 0.3509 -3.5160 -4.1152 24 6 1.4412 -3.2368 -5.1224 25 7 1.2964 -2.9049 -6.3719 26 6 2.5074 -2.7461 -6.9302 27 6 3.4387 -2.9896 -5.9857 28 7 2.7646 -3.2989 -4.8419 29 6 3.3272 -3.6395 -3.5332 30 1 -0.4849 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8896 33 1 2.8314 -5.2922 1.0870 34 1 1.7690 -4.1726 1.9735 35 1 2.6459 -2.2499 3.0841 36 1 4.6542 -1.1026 3.9953 37 1 6.8972 -1.8124 3.1909 38 1 7.0624 -3.6180 1.5247 39 1 1.2484 -5.2581 -3.2109 40 1 0.2621 -4.2792 -2.0978 41 1 -0.4154 -4.1455 -4.5677 42 1 -0.0925 -2.5772 -3.7834 43 1 2.7016 -2.4713 -7.9564 44 1 4.5106 -2.9476 -6.1112 45 1 4.1538 -2.9667 -3.3046 46 1 3.6845 -4.6692 -3.5458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368878136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = 45.367914 kcal Electronic energy + Delta-G solvation = -30285.965024 eV Core-core repulsion = 26368.738642 eV Total energy + Delta-G solvation = -3917.226382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.29114 -41.36922 -40.52693 -37.24066 -36.81935 -34.67442 -34.23266 -33.31588 -32.73497 -31.03482 -29.44812 -29.40476 -27.67597 -25.51704 -24.90646 -24.27338 -23.80877 -22.79243 -22.30376 -20.46117 -19.57269 -18.69616 -18.39602 -17.75979 -17.58135 -17.15409 -16.96183 -16.63882 -16.47158 -16.16146 -15.71229 -15.45025 -15.10121 -14.95615 -14.69735 -14.63353 -14.39832 -14.14179 -14.09620 -13.85690 -13.75247 -13.48124 -13.16597 -12.93286 -12.83497 -12.77875 -12.62157 -12.49947 -12.15479 -12.06695 -11.96555 -11.71038 -10.99238 -10.80115 -10.69340 -10.58470 -10.51151 -10.31315 -9.85997 -9.46079 -9.27865 -8.20549 -6.30613 0.22804 0.47902 1.11096 1.33084 1.38878 1.44020 1.61870 1.83322 2.16349 2.27609 2.40738 3.04855 3.11660 3.32214 3.44004 3.45312 3.53034 3.67561 3.89020 4.01168 4.05998 4.15885 4.22551 4.29029 4.32710 4.33727 4.37079 4.52839 4.56245 4.62415 4.67952 4.73244 4.83006 4.87448 4.92060 4.93994 4.96117 5.09673 5.26730 5.28997 5.35217 5.38917 5.65397 5.82465 5.85978 5.88373 6.08224 6.18123 6.52644 6.81622 7.13705 7.20283 7.28289 7.42124 8.84437 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.004538 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.886497 B = 6168.347883 C = 7428.339755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 0.932 3.068 4 H -0.285 1.285 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.038 0.962 9 C 0.250 3.750 10 N -0.588 5.588 11 C 0.168 3.832 12 C 0.102 3.898 13 C -0.149 4.149 14 C -0.088 4.088 15 C -0.171 4.171 16 C 0.073 3.927 17 N -0.494 5.494 18 C 0.530 3.470 19 O -0.567 6.567 20 C -0.116 4.116 21 H 0.098 0.902 22 C -0.099 4.099 23 C -0.027 4.027 24 C 0.193 3.807 25 N -0.524 5.524 26 C -0.052 4.052 27 C -0.056 4.056 28 N -0.456 5.456 29 C 0.132 3.868 30 H 0.266 0.734 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.193 0.807 44 H 0.203 0.797 45 H 0.086 0.914 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 -5.508 0.817 8.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.166 4.166 3 Si 0.759 3.241 4 H -0.211 1.211 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.056 0.944 9 C 0.129 3.871 10 N -0.318 5.318 11 C 0.044 3.956 12 C -0.037 4.037 13 C -0.170 4.170 14 C -0.114 4.114 15 C -0.191 4.191 16 C -0.084 4.084 17 N -0.204 5.204 18 C 0.317 3.683 19 O -0.447 6.447 20 C -0.138 4.138 21 H 0.117 0.883 22 C -0.137 4.137 23 C -0.066 4.066 24 C -0.070 4.070 25 N -0.243 5.243 26 C -0.199 4.199 27 C -0.189 4.189 28 N -0.138 5.138 29 C 0.009 3.991 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.154 0.846 36 H 0.172 0.828 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.105 0.895 43 H 0.209 0.791 44 H 0.220 0.780 45 H 0.105 0.895 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.926 -6.434 -0.045 8.748 hybrid contribution 1.189 2.043 0.995 2.565 sum 7.115 -4.391 0.950 8.414 Atomic orbital electron populations 1.69949 1.06558 1.27801 1.50550 1.25336 0.95291 1.01070 0.94932 0.85951 0.79070 0.81143 0.77905 1.21136 1.20459 1.19920 1.21413 0.92364 0.91487 1.51143 0.94359 1.19241 0.87250 0.82219 0.98347 1.48083 1.44507 1.34444 1.04764 1.20289 0.93184 0.96331 0.85778 1.21647 0.93321 0.95184 0.93501 1.22106 1.00804 0.96184 0.97865 1.21908 0.92336 0.98437 0.98758 1.22433 0.99349 0.98520 0.98815 1.23154 0.97386 0.93630 0.94254 1.67532 0.99186 1.29080 1.24553 1.20163 0.80966 0.81547 0.85620 1.90650 1.32013 1.34156 1.87840 1.21483 0.96959 1.03353 0.91975 0.88344 1.21525 0.95049 0.98788 0.98388 1.20221 0.93359 1.02373 0.90606 1.23710 0.84919 1.04642 0.93686 1.70018 1.27745 1.20373 1.06196 1.22814 0.87455 1.08351 1.01272 1.23113 1.00740 1.09379 0.85694 1.45508 1.07406 1.50650 1.10215 1.21647 0.95752 1.03014 0.78685 0.92452 0.94350 0.94923 0.89729 0.87409 0.84597 0.82764 0.81950 0.81339 0.90145 0.88812 0.86648 0.89458 0.79051 0.78034 0.89528 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.69 13.29 21.45 0.28 -46.41 16 2 C 0.03 1.72 5.46 84.65 0.46 2.19 16 3 Si 0.93 40.70 29.54 68.60 2.03 42.73 16 4 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.53 -25.08 8.70 25.60 0.22 -24.85 16 8 H 0.04 1.97 7.81 -2.91 -0.02 1.94 16 9 C 0.25 10.54 4.84 85.63 0.41 10.95 16 10 N -0.59 -22.30 2.45 -830.53 -2.04 -24.34 16 11 C 0.17 5.76 5.72 85.64 0.49 6.25 16 12 C 0.10 3.61 6.36 42.55 0.27 3.89 16 13 C -0.15 -4.81 9.72 22.36 0.22 -4.60 16 14 C -0.09 -2.42 10.18 22.47 0.23 -2.19 16 15 C -0.17 -4.33 10.11 22.36 0.23 -4.10 16 16 C 0.07 2.16 11.18 84.67 0.95 3.10 16 17 N -0.49 -18.05 10.27 -183.87 -1.89 -19.94 16 18 C 0.53 20.08 6.71 87.65 0.59 20.67 16 19 O -0.57 -23.47 15.54 -3.01 -0.05 -23.52 16 20 C -0.12 -3.96 1.70 -11.40 -0.02 -3.97 16 21 H 0.10 3.93 6.21 -2.39 -0.01 3.91 16 22 C -0.10 -2.85 4.96 30.78 0.15 -2.70 16 23 C -0.03 -0.77 6.33 30.09 0.19 -0.58 16 24 C 0.19 6.43 7.65 138.23 1.06 7.48 16 25 N -0.52 -18.27 11.24 -187.52 -2.11 -20.38 16 26 C -0.05 -1.51 11.87 83.54 0.99 -0.52 16 27 C -0.06 -1.55 11.64 83.22 0.97 -0.58 16 28 N -0.46 -14.33 3.13 -513.83 -1.61 -15.94 16 29 C 0.13 4.14 5.99 86.47 0.52 4.66 16 30 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 31 H 0.04 1.66 5.72 -2.38 -0.01 1.65 16 32 H 0.03 1.43 7.83 -2.39 -0.02 1.41 16 33 H 0.08 2.93 7.50 -2.39 -0.02 2.91 16 34 H 0.11 3.16 7.76 -2.39 -0.02 3.14 16 35 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.17 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 40 H 0.09 2.61 7.37 -2.38 -0.02 2.59 16 41 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 42 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 43 H 0.19 4.29 8.06 -2.91 -0.02 4.26 16 44 H 0.20 4.02 8.06 -2.91 -0.02 3.99 16 45 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 46 H 0.10 3.07 7.52 -2.39 -0.02 3.06 16 Total: -1.00 -64.71 382.84 3.54 -61.17 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.99 Total: 31.54 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 7.93 Total: 15.09 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -7.36 Total: -127.00 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -64.71 3.54 -61.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368878136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.538 kcal (2) G-P(sol) polarization free energy of solvation -64.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds