Wall clock time and date at job start Sat Apr 11 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48505 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47466 * 300.00174 * 3 2 1 6 6 H 1.48500 * 109.46820 * 60.00580 * 3 2 1 7 7 C 1.37876 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00509 * 173.55059 * 7 2 1 9 9 C 1.50701 * 119.99728 * 353.55224 * 7 2 1 10 10 C 1.52998 * 115.54950 * 85.40443 * 9 7 2 11 11 N 1.46500 * 109.47306 * 65.14534 * 10 9 7 12 12 C 1.34770 * 120.00676 * 178.28217 * 11 10 9 13 13 O 1.21589 * 119.99954 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00320 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00085 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47268 * 180.02562 * 15 14 12 17 17 C 1.38278 * 119.93644 * 89.99693 * 16 15 14 18 18 C 1.38121 * 120.06751 * 180.25306 * 17 16 15 19 19 C 1.38839 * 119.93098 * 359.49356 * 18 17 16 20 20 N 1.40181 * 120.06646 * 180.22675 * 19 18 17 21 21 C 1.35232 * 126.05343 * 359.97376 * 20 19 18 22 22 C 1.35321 * 107.71193 * 179.86780 * 21 20 19 23 23 C 1.39916 * 107.93124 * 0.39309 * 22 21 20 24 24 N 1.30878 * 108.24476 * 359.75160 * 23 22 21 25 25 C 1.38839 * 119.86735 * 0.48890 * 19 18 17 26 26 C 1.38124 * 119.93125 * 359.75916 * 25 19 18 27 27 C 1.52995 * 117.49981 * 231.07678 * 9 7 2 28 28 C 1.52997 * 117.50091 * 299.73509 * 9 7 2 29 29 H 0.97000 * 120.00030 * 5.05384 * 1 2 3 30 30 H 1.08994 * 109.47700 * 305.14222 * 10 9 7 31 31 H 1.09005 * 109.47021 * 185.13719 * 10 9 7 32 32 H 0.97001 * 119.99637 * 358.28062 * 11 10 9 33 33 H 0.96994 * 120.00454 * 0.02562 * 14 12 11 34 34 H 1.08999 * 109.47351 * 59.99561 * 15 14 12 35 35 H 1.09004 * 109.46565 * 300.00157 * 15 14 12 36 36 H 1.07999 * 119.96125 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.03036 * 179.72272 * 18 17 16 38 38 H 1.08002 * 126.14047 * 359.97438 * 21 20 19 39 39 H 1.08002 * 126.03039 * 180.14042 * 22 21 20 40 40 H 1.07999 * 125.87833 * 179.78296 * 23 22 21 41 41 H 1.08000 * 120.03528 * 179.79154 * 25 19 18 42 42 H 1.07999 * 119.96319 * 179.97438 * 26 25 19 43 43 H 1.08999 * 117.50459 * 215.00390 * 27 9 7 44 44 H 1.09005 * 117.50052 * 0.02562 * 27 9 7 45 45 H 1.09005 * 117.49526 * 359.97438 * 28 9 7 46 46 H 1.08999 * 117.50268 * 144.97472 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1970 -0.1056 9 6 1.2582 -2.4951 0.1454 10 6 0.7021 -3.0859 -1.1517 11 7 1.8111 -3.4583 -2.0335 12 6 1.5599 -4.0346 -3.2256 13 8 0.4129 -4.2459 -3.5692 14 7 2.5802 -4.3767 -4.0371 15 6 2.3072 -5.0036 -5.3328 16 6 3.6084 -5.2846 -6.0390 17 6 4.2496 -6.4948 -5.8486 18 6 5.4450 -6.7531 -6.4905 19 6 5.9974 -5.8003 -7.3359 20 7 7.2081 -6.0614 -7.9925 21 6 7.9397 -7.1943 -7.8922 22 6 9.0303 -7.0511 -8.6804 23 6 8.9687 -5.7864 -9.2755 24 7 7.8773 -5.1927 -8.8641 25 6 5.3511 -4.5862 -7.5253 26 6 4.1585 -4.3317 -6.8766 27 6 1.7470 -3.4738 1.2150 28 6 0.4418 -2.7017 1.4228 29 1 -0.4850 0.8368 -0.0740 30 1 0.0754 -2.3456 -1.6489 31 1 0.1075 -3.9703 -0.9225 32 1 2.7262 -3.2901 -1.7594 33 1 3.4953 -4.2085 -3.7630 34 1 1.7009 -4.3322 -5.9408 35 1 1.7691 -5.9388 -5.1776 36 1 3.8175 -7.2370 -5.1938 37 1 5.9476 -7.6968 -6.3378 38 1 7.6963 -8.0587 -7.2922 39 1 9.8125 -7.7824 -8.8216 40 1 9.6962 -5.3716 -9.9575 41 1 5.7801 -3.8418 -8.1797 42 1 3.6555 -3.3874 -7.0233 43 1 1.6726 -4.5387 0.9946 44 1 2.6083 -3.1765 1.8134 45 1 0.4449 -1.8968 2.1578 46 1 -0.4916 -3.2583 1.3391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430203626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:26 Heat of formation + Delta-G solvation = 104.407245 kcal Electronic energy + Delta-G solvation = -27459.042347 eV Core-core repulsion = 23544.376102 eV Total energy + Delta-G solvation = -3914.666244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.89702 -39.87427 -39.07985 -36.79649 -35.16898 -33.36950 -33.09950 -31.96916 -31.66890 -30.51495 -29.87776 -26.74198 -25.65400 -24.72291 -23.56673 -22.76934 -21.21308 -20.97059 -20.79645 -20.30291 -19.37991 -18.69903 -17.85322 -16.53717 -15.91863 -15.75074 -15.63137 -15.52508 -15.26148 -14.90385 -14.61705 -14.25235 -14.06222 -13.99649 -13.86035 -13.58565 -13.34487 -13.14238 -12.94897 -12.74235 -12.59794 -11.80423 -11.73313 -11.57257 -11.50799 -11.06972 -11.02486 -10.91181 -10.69397 -10.52492 -10.27097 -9.78370 -9.57494 -9.49075 -9.41726 -8.97294 -8.86780 -8.50162 -8.41081 -8.24786 -7.97163 -6.07874 -4.16326 0.37952 0.94267 1.74217 1.97592 2.36550 3.11957 3.24637 3.33778 3.35643 3.56410 3.79081 4.04659 4.28542 4.35015 4.44390 4.48036 4.54949 4.83764 4.86696 4.96840 5.07141 5.20344 5.22107 5.27483 5.36431 5.46878 5.49998 5.64887 5.70132 5.81915 5.86411 6.03415 6.18380 6.26519 6.32845 6.34481 6.47299 6.59930 6.69356 6.71570 6.76891 6.85665 7.09045 7.20723 7.32880 7.41280 7.47261 7.59578 7.81565 8.34196 8.65349 8.84611 9.19485 9.50408 10.99984 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.002007 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.557628 B =13945.637605 C =14790.213297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.026 3.974 10 C 0.182 3.818 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.603 6.603 14 N -0.751 5.751 15 C 0.183 3.817 16 C -0.109 4.109 17 C -0.072 4.072 18 C -0.143 4.143 19 C 0.160 3.840 20 N -0.321 5.321 21 C 0.053 3.947 22 C -0.264 4.264 23 C 0.054 3.946 24 N -0.290 5.290 25 C -0.120 4.120 26 C -0.073 4.073 27 C -0.210 4.210 28 C -0.147 4.147 29 H 0.261 0.739 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.396 0.604 33 H 0.395 0.605 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.178 0.822 39 H 0.154 0.846 40 H 0.190 0.810 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.271 -15.238 -15.630 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.026 3.974 10 C 0.059 3.941 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.483 6.483 14 N -0.409 5.409 15 C 0.059 3.941 16 C -0.110 4.110 17 C -0.091 4.091 18 C -0.164 4.164 19 C 0.068 3.932 20 N -0.097 5.097 21 C -0.090 4.090 22 C -0.292 4.292 23 C -0.133 4.133 24 N -0.109 5.109 25 C -0.140 4.140 26 C -0.092 4.092 27 C -0.248 4.248 28 C -0.186 4.186 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.229 0.771 33 H 0.228 0.772 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.195 0.805 39 H 0.172 0.828 40 H 0.207 0.793 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.225 -14.226 -15.886 25.092 hybrid contribution 1.909 0.336 0.248 1.954 sum 15.134 -13.890 -15.638 25.817 Atomic orbital electron populations 1.69981 1.05873 1.26810 1.48305 1.24990 0.94807 0.98950 0.94347 0.86584 0.80153 0.83896 0.77631 1.19760 1.21052 1.20958 1.20358 0.92808 0.88586 1.51885 0.92210 1.19062 0.98634 0.93935 0.85802 1.20849 0.86602 0.96662 0.90005 1.45149 1.11349 1.63562 1.17114 1.16028 0.84481 0.78885 0.80801 1.90878 1.19829 1.61935 1.75651 1.45129 1.08641 1.67993 1.19117 1.19905 0.92270 0.98671 0.83298 1.20068 0.97481 0.94572 0.98901 1.20944 0.93502 0.96812 0.97853 1.20774 0.97588 0.99095 0.98902 1.17614 0.84286 0.96059 0.95271 1.45943 1.16868 1.12242 1.34645 1.22671 0.93137 0.91896 1.01269 1.21627 1.02013 0.99983 1.05596 1.24106 0.95738 0.93948 0.99544 1.77479 1.08619 1.16100 1.08660 1.20902 0.95756 0.95769 1.01572 1.21096 0.94239 0.99213 0.94693 1.23014 0.98640 0.95669 1.07442 1.22490 0.92298 1.01076 1.02697 0.92892 0.91191 0.94709 0.77074 0.77201 0.90772 0.90859 0.84543 0.85142 0.80487 0.82834 0.79348 0.84349 0.84524 0.91649 0.90419 0.89827 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.26 12.91 55.43 0.72 -23.54 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -12.76 8.63 -34.44 -0.30 -13.06 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.62 1.38 -155.66 -0.21 0.40 16 10 C 0.18 4.16 5.50 -4.04 -0.02 4.13 16 11 N -0.72 -13.94 5.48 -65.23 -0.36 -14.30 16 12 C 0.70 13.10 8.57 -86.93 -0.74 12.35 16 13 O -0.60 -13.69 16.34 5.29 0.09 -13.60 16 14 N -0.75 -10.27 5.55 -66.41 -0.37 -10.64 16 15 C 0.18 2.12 5.80 -5.19 -0.03 2.09 16 16 C -0.11 -1.03 5.25 -104.59 -0.55 -1.58 16 17 C -0.07 -0.59 9.69 -39.61 -0.38 -0.97 16 18 C -0.14 -1.13 9.46 -39.40 -0.37 -1.50 16 19 C 0.16 1.57 6.69 -83.59 -0.56 1.01 16 20 N -0.32 -3.22 3.80 -10.70 -0.04 -3.26 16 21 C 0.05 0.39 10.80 -17.09 -0.18 0.21 16 22 C -0.26 -1.80 10.81 -39.99 -0.43 -2.23 16 23 C 0.05 0.43 12.03 -17.33 -0.21 0.22 16 24 N -0.29 -3.14 11.87 30.64 0.36 -2.78 16 25 C -0.12 -1.20 9.66 -39.40 -0.38 -1.58 16 26 C -0.07 -0.69 9.69 -39.61 -0.38 -1.07 16 27 C -0.21 -4.33 9.96 -26.70 -0.27 -4.60 16 28 C -0.15 -3.35 9.42 -26.70 -0.25 -3.60 16 29 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 30 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 31 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.40 6.97 8.38 -40.82 -0.34 6.62 16 33 H 0.39 4.56 8.48 -40.82 -0.35 4.22 16 34 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 0.70 6.74 -52.49 -0.35 0.35 16 38 H 0.18 0.72 7.04 -52.49 -0.37 0.36 16 39 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.19 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 1.40 7.70 -52.49 -0.40 0.99 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 45 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 46 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -32.84 397.21 -10.44 -43.28 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.43 Total: 11.22 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -5.38 Total: -7.93 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.31 Total: -54.51 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.84 -10.44 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430203626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.692 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds