Wall clock time and date at job start Sat Apr 11 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35247 * 126.06846 * 2 1 4 4 C 1.40403 * 107.86544 * 179.97438 * 3 2 1 5 5 N 1.40189 * 125.97159 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00283 * 0.02562 * 5 4 3 7 7 O 1.21592 * 119.99563 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00015 * 179.97438 * 6 5 4 9 9 C 1.46636 * 126.56502 * 0.02562 * 8 6 5 10 10 C 1.50782 * 107.70080 * 180.02562 * 9 8 6 11 11 C 1.38444 * 131.20324 * 179.97438 * 10 9 8 12 12 C 1.38144 * 120.10000 * 180.02562 * 11 10 9 13 13 C 1.38256 * 119.96496 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.01654 * 180.02562 * 13 12 11 15 15 C 1.38143 * 119.95820 * 0.02663 * 13 12 11 16 16 C 1.38072 * 108.86040 * 0.02562 * 10 9 8 17 17 C 1.46638 * 126.55871 * 179.71615 * 8 6 5 18 18 N 1.31210 * 108.05379 * 0.02562 * 4 3 2 19 19 N 1.34961 * 126.07238 * 179.68801 * 2 1 3 20 20 C 1.46503 * 125.97296 * 0.02562 * 19 2 1 21 21 C 1.50699 * 109.47464 * 89.99817 * 20 19 2 22 22 H 1.07998 * 119.99591 * 359.97438 * 21 20 19 23 23 C 1.37881 * 120.00167 * 179.97438 * 21 20 19 24 24 N 1.31505 * 120.00045 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99688 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47051 * 90.00361 * 25 23 21 27 27 H 1.48502 * 109.46839 * 209.99826 * 25 23 21 28 28 H 1.48499 * 109.47629 * 330.00029 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.02478 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02578 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02559 * 1 2 3 32 32 H 1.07996 * 126.06948 * 359.96076 * 3 2 1 33 33 H 0.97001 * 120.00122 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.80945 * 299.54528 * 9 8 6 35 35 H 1.08996 * 109.81141 * 60.45386 * 9 8 6 36 36 H 1.07992 * 119.94924 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.01522 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.46951 * 270.02085 * 14 13 12 39 39 H 1.08992 * 109.47166 * 30.02415 * 14 13 12 40 40 H 1.08996 * 109.46794 * 150.02870 * 14 13 12 41 41 H 1.07999 * 119.94367 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.81105 * 299.53951 * 17 8 6 43 43 H 1.08998 * 109.81906 * 60.45018 * 17 8 6 44 44 H 1.09008 * 109.46897 * 209.99589 * 20 19 2 45 45 H 1.09000 * 109.47309 * 329.99144 * 20 19 2 46 46 H 0.97003 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7737 1.4752 0.0013 6 6 4.6370 2.8160 0.0020 7 8 3.5277 3.3139 0.0015 8 7 5.7298 3.6048 0.0032 9 6 7.1274 3.1611 0.0033 10 6 7.9990 4.3915 0.0055 11 6 9.3761 4.5336 0.0069 12 6 9.9426 5.7936 0.0094 13 6 9.1334 6.9145 0.0099 14 6 9.7502 8.2896 0.0119 15 6 7.7592 6.7733 0.0085 16 6 7.1908 5.5110 0.0072 17 6 5.7486 5.0711 -0.0018 18 7 3.6336 -0.6575 0.0004 19 7 2.3017 -1.0908 0.0059 20 6 1.8501 -2.4845 0.0130 21 6 1.6957 -2.9698 -1.4053 22 1 1.9119 -2.3063 -2.2296 23 6 1.2784 -4.2608 -1.6507 24 7 1.1432 -4.6841 -2.8884 25 14 0.9051 -5.4086 -0.2250 26 1 -0.5259 -5.2818 0.1509 27 1 1.1884 -6.8090 -0.6297 28 1 1.7561 -5.0474 0.9372 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5134 31 1 -0.3633 -0.8898 0.5142 32 1 1.9720 2.1211 -0.0006 33 1 5.6587 1.0779 0.0013 34 1 7.3261 2.5666 0.8950 35 1 7.3269 2.5682 -0.8892 36 1 10.0084 3.6582 0.0070 37 1 11.0171 5.9028 0.0101 38 1 9.8982 8.6198 1.0401 39 1 10.7111 8.2575 -0.5014 40 1 9.0870 8.9859 -0.5013 41 1 7.1273 7.6492 0.0093 42 1 5.2510 5.4439 -0.8971 43 1 5.2445 5.4502 0.8871 44 1 2.5846 -3.1018 0.5303 45 1 0.8913 -2.5532 0.5270 46 1 0.8499 -5.5925 -3.0611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432280093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:35 Heat of formation + Delta-G solvation = 93.449920 kcal Electronic energy + Delta-G solvation = -27891.536189 eV Core-core repulsion = 23976.394799 eV Total energy + Delta-G solvation = -3915.141390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.22184 -40.57026 -39.33017 -36.79474 -34.90598 -33.35929 -32.80891 -31.99911 -31.30809 -31.01873 -28.97042 -27.64667 -26.76796 -26.36724 -24.83782 -22.73953 -22.15047 -21.35076 -20.76713 -19.72931 -19.38173 -17.72887 -17.11012 -16.67257 -16.54327 -16.08066 -15.66309 -15.40817 -15.15262 -14.83762 -14.57220 -14.33028 -14.00631 -13.91326 -13.69011 -13.29699 -13.23458 -13.10644 -12.79745 -12.62371 -12.57400 -12.39237 -12.31718 -12.10444 -11.96301 -11.70456 -11.52947 -11.23779 -11.22892 -10.79043 -10.59049 -10.12350 -9.96309 -9.76747 -9.57860 -9.39803 -9.15589 -8.77698 -8.56597 -7.98033 -7.44472 -6.25398 -4.28344 0.84419 0.94329 2.10585 2.54934 3.00676 3.14367 3.21131 3.23814 3.24183 3.32139 3.75472 3.80731 4.06995 4.10504 4.22264 4.46388 4.57191 4.81148 4.98132 5.02909 5.04442 5.07887 5.15324 5.16958 5.25098 5.30507 5.34743 5.40644 5.61617 5.63392 5.65868 5.71323 5.84446 5.92194 6.05769 6.13023 6.15246 6.22098 6.36167 6.48060 6.52488 6.53801 6.59912 6.79921 6.95931 7.29960 7.43359 7.79137 7.87424 8.32332 8.47214 8.59102 8.80346 9.29817 10.87123 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.001943 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.324765 B =14406.112786 C =15058.107363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.095 3.905 3 C -0.286 4.286 4 C 0.286 3.714 5 N -0.639 5.639 6 C 0.742 3.258 7 O -0.557 6.557 8 N -0.633 5.633 9 C 0.140 3.860 10 C -0.109 4.109 11 C -0.089 4.089 12 C -0.117 4.117 13 C -0.081 4.081 14 C -0.114 4.114 15 C -0.096 4.096 16 C -0.097 4.097 17 C 0.173 3.827 18 N -0.319 5.319 19 N -0.317 5.317 20 C 0.232 3.768 21 C -0.540 4.540 22 H 0.081 0.919 23 C 0.079 3.921 24 N -0.887 5.887 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.407 0.593 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.693 23.000 8.024 28.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.317 4.317 4 C 0.033 3.967 5 N -0.289 5.289 6 C 0.443 3.557 7 O -0.431 6.431 8 N -0.372 5.372 9 C 0.017 3.983 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.135 4.135 13 C -0.081 4.081 14 C -0.171 4.171 15 C -0.114 4.114 16 C -0.098 4.098 17 C 0.049 3.951 18 N -0.150 5.150 19 N -0.099 5.099 20 C 0.113 3.887 21 C -0.578 4.578 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.524 5.524 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.180 0.820 33 H 0.242 0.758 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.144 0.856 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.393 21.958 7.910 27.959 hybrid contribution 0.032 -0.403 0.455 0.609 sum 15.425 21.555 8.365 27.794 Atomic orbital electron populations 1.20356 0.87761 1.02711 1.03481 1.21053 0.94915 0.86945 1.00639 1.21248 0.89607 0.99896 1.20954 1.18612 0.86475 0.89191 1.02456 1.41310 1.07765 1.03371 1.76461 1.14777 0.82681 0.80099 0.78142 1.90897 1.22327 1.73297 1.56569 1.46815 1.04440 1.06594 1.79359 1.20327 0.80251 0.94979 1.02742 1.20186 0.93915 0.94767 1.02114 1.20469 0.92651 0.97874 0.99765 1.20961 0.99795 0.91626 1.01114 1.19840 0.93082 0.95911 0.99312 1.20792 1.00923 0.92823 1.02530 1.20323 0.94209 0.95688 1.01196 1.20308 0.95069 0.93905 1.00521 1.19981 0.92750 0.79032 1.03290 1.77254 0.99440 1.08317 1.29963 1.48490 1.01134 1.06982 1.53333 1.19989 0.95274 0.73758 0.99693 1.21183 1.47296 0.98924 0.90446 0.90107 1.24806 0.94501 0.97430 0.95801 1.69870 1.45713 1.17934 1.18835 0.86906 0.79429 0.80940 0.82891 1.19621 1.20516 1.18802 0.90061 0.90627 0.91121 0.82024 0.75792 0.89926 0.89858 0.85510 0.85472 0.90978 0.91354 0.91330 0.85580 0.89730 0.89818 0.93234 0.93640 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.11 36.01 0.36 -1.06 16 2 C 0.10 2.00 6.92 -82.28 -0.57 1.43 16 3 C -0.29 -5.94 9.52 -39.83 -0.38 -6.31 16 4 C 0.29 5.89 8.11 -154.37 -1.25 4.64 16 5 N -0.64 -10.40 5.42 -15.51 -0.08 -10.48 16 6 C 0.74 11.71 8.48 -86.92 -0.74 10.98 16 7 O -0.56 -10.47 13.84 5.28 0.07 -10.40 16 8 N -0.63 -7.61 3.34 -181.87 -0.61 -8.21 16 9 C 0.14 1.27 6.22 -5.08 -0.03 1.24 16 10 C -0.11 -0.95 6.22 -104.57 -0.65 -1.60 16 11 C -0.09 -0.65 10.05 -39.54 -0.40 -1.04 16 12 C -0.12 -0.77 9.70 -39.61 -0.38 -1.15 16 13 C -0.08 -0.55 5.88 -104.65 -0.62 -1.16 16 14 C -0.11 -0.49 10.01 36.01 0.36 -0.13 16 15 C -0.10 -0.72 9.70 -39.54 -0.38 -1.10 16 16 C -0.10 -0.87 6.22 -104.57 -0.65 -1.52 16 17 C 0.17 1.77 6.91 -5.08 -0.04 1.74 16 18 N -0.32 -7.34 12.59 31.44 0.40 -6.94 16 19 N -0.32 -7.42 3.59 -58.32 -0.21 -7.63 16 20 C 0.23 5.60 5.06 -5.19 -0.03 5.58 16 21 C -0.54 -15.19 9.94 -34.44 -0.34 -15.53 16 22 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 25 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.14 7.06 -51.93 -0.37 0.78 16 32 H 0.16 3.29 5.91 -52.49 -0.31 2.98 16 33 H 0.41 5.42 7.87 -40.82 -0.32 5.10 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 40 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.05 1.20 7.20 -51.92 -0.37 0.83 16 45 H 0.05 1.01 6.46 -51.93 -0.34 0.67 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -34.65 383.69 -10.74 -45.38 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.36 Total: 5.56 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -5.83 Total: -2.93 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.27 Total: -58.89 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.65 -10.74 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432280093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.835 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds