Wall clock time and date at job start Sat Apr 11 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48497 * 109.47268 * 239.99652 * 3 2 1 5 5 H 1.48502 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46994 * 119.99813 * 3 2 1 7 7 C 1.37885 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99863 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46784 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99526 * 180.02562 * 10 9 7 12 12 O 1.21584 * 120.00380 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99592 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99616 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46883 * 269.99507 * 14 13 11 16 16 C 1.50698 * 109.47184 * 179.97438 * 15 14 13 17 17 C 1.38229 * 119.61399 * 124.73086 * 16 15 14 18 18 C 1.38627 * 119.15948 * 179.75880 * 17 16 15 19 19 C 1.38675 * 118.42204 * 0.50628 * 18 17 16 20 20 C 1.38186 * 119.16020 * 359.73584 * 19 18 17 21 21 N 1.31852 * 119.62297 * 305.00606 * 16 15 14 22 22 C 1.46494 * 120.00316 * 359.97438 * 13 11 10 23 23 C 1.50700 * 109.47370 * 270.00247 * 22 13 11 24 24 C 1.38648 * 120.78793 * 269.71849 * 23 22 13 25 25 C 1.38209 * 119.16227 * 179.80050 * 24 23 22 26 26 N 1.31875 * 120.76343 * 0.48301 * 25 24 23 27 27 C 1.31868 * 121.72359 * 359.74271 * 26 25 24 28 28 C 1.38209 * 120.76549 * 0.02562 * 27 26 25 29 29 H 0.96993 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46773 * 60.00566 * 9 7 2 31 31 H 1.08999 * 109.47213 * 300.00329 * 9 7 2 32 32 H 0.96996 * 120.00458 * 0.02562 * 10 9 7 33 33 H 1.09001 * 109.46891 * 149.99941 * 14 13 11 34 34 H 1.08993 * 109.47378 * 29.99313 * 14 13 11 35 35 H 1.09001 * 109.46801 * 300.00349 * 15 14 13 36 36 H 1.09001 * 109.46998 * 59.99945 * 15 14 13 37 37 H 1.08002 * 120.42316 * 359.97438 * 17 16 15 38 38 H 1.07999 * 120.79042 * 180.26478 * 18 17 16 39 39 H 1.07997 * 120.42289 * 179.71003 * 19 18 17 40 40 H 1.08000 * 119.61793 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.47065 * 30.00245 * 22 13 11 42 42 H 1.09000 * 109.47308 * 150.00078 * 22 13 11 43 43 H 1.08000 * 120.42398 * 0.02562 * 24 23 22 44 44 H 1.07997 * 119.62283 * 180.20829 * 25 24 23 45 45 H 1.07999 * 119.62201 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.41541 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 1.7538 -4.8833 0.0019 12 8 0.5585 -5.1055 0.0019 13 7 2.6297 -5.9077 0.0022 14 6 2.1413 -7.2890 0.0020 15 6 1.9710 -7.7698 1.4445 16 6 1.4680 -9.1903 1.4445 17 6 2.1710 -10.1639 2.1292 18 6 1.6971 -11.4666 2.1270 19 6 0.5344 -11.7449 1.4244 20 6 -0.1117 -10.7205 0.7589 21 7 0.3656 -9.4914 0.7869 22 6 4.0700 -5.6400 0.0015 23 6 4.5634 -5.5490 -1.4195 24 6 5.0188 -6.6762 -2.0862 25 6 5.4599 -6.5550 -3.3904 26 7 5.4596 -5.3838 -3.9965 27 6 5.0381 -4.2903 -3.3919 28 6 4.5781 -4.3352 -2.0894 29 1 -0.4850 0.8400 -0.0004 30 1 0.6242 -2.5575 -0.8881 31 1 0.6247 -2.5563 0.8919 32 1 3.1568 -3.4354 0.0010 33 1 2.8595 -7.9282 -0.5116 34 1 1.1813 -7.3349 -0.5120 35 1 2.9311 -7.7238 1.9586 36 1 1.2529 -7.1305 1.9582 37 1 3.0761 -9.9121 2.6620 38 1 2.2230 -12.2471 2.6568 39 1 0.1390 -12.7495 1.3971 40 1 -1.0180 -10.9288 0.2097 41 1 4.2648 -4.6984 0.5147 42 1 4.5900 -6.4483 0.5156 43 1 5.0254 -7.6374 -1.5939 44 1 5.8131 -7.4287 -3.9178 45 1 5.0531 -3.3485 -3.9204 46 1 4.2345 -3.4361 -1.5995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438317578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:39 Heat of formation + Delta-G solvation = 45.256152 kcal Electronic energy + Delta-G solvation = -28684.853004 eV Core-core repulsion = 24767.621775 eV Total energy + Delta-G solvation = -3917.231228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.54650 -40.24644 -39.26775 -35.96555 -34.55638 -33.68640 -32.56443 -32.29241 -32.07278 -31.17376 -29.26881 -27.22516 -26.57124 -24.35760 -23.66326 -23.40539 -22.47896 -22.15621 -21.41578 -19.25923 -18.14801 -17.08922 -16.73971 -16.39875 -16.34641 -16.12392 -15.81570 -15.65829 -15.44080 -14.81071 -14.69366 -14.36061 -13.91903 -13.72755 -13.66648 -13.56012 -13.38837 -13.04651 -12.97376 -12.80901 -12.38889 -12.30826 -11.95469 -11.78861 -11.72244 -11.41636 -11.03525 -10.93255 -10.86455 -10.29193 -10.06864 -9.76800 -9.59732 -9.51737 -9.38154 -9.31753 -9.18648 -9.13204 -8.72896 -8.47563 -7.76482 -6.15260 -4.22436 0.90904 1.09213 1.14479 1.18598 3.12630 3.25210 3.30839 3.31938 3.62159 3.83273 3.89807 4.16273 4.30767 4.46097 4.49088 4.57126 4.62204 4.65307 4.76406 4.84784 4.91549 5.01681 5.10371 5.18069 5.20762 5.25400 5.29967 5.34240 5.49035 5.50836 5.54253 5.66247 5.78820 5.87171 5.95282 5.96796 6.08076 6.19654 6.26824 6.51706 6.68332 6.74795 7.08936 7.49236 7.51604 7.57882 7.83129 7.88393 7.97142 8.01237 8.73368 8.87992 9.30698 9.46884 10.94818 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.003149 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.732172 B = 8889.602106 C =11188.417649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.695 3.305 12 O -0.586 6.586 13 N -0.632 5.632 14 C 0.147 3.853 15 C -0.088 4.088 16 C 0.141 3.859 17 C -0.173 4.173 18 C -0.075 4.075 19 C -0.184 4.184 20 C 0.104 3.896 21 N -0.474 5.474 22 C 0.149 3.851 23 C -0.063 4.063 24 C -0.161 4.161 25 C 0.091 3.909 26 N -0.487 5.487 27 C 0.101 3.899 28 C -0.151 4.151 29 H 0.266 0.734 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.383 0.617 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.130 0.870 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.916 -21.821 1.929 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.396 3.604 12 O -0.464 6.464 13 N -0.370 5.370 14 C 0.023 3.977 15 C -0.127 4.127 16 C 0.002 3.998 17 C -0.193 4.193 18 C -0.101 4.101 19 C -0.204 4.204 20 C -0.053 4.053 21 N -0.183 5.183 22 C 0.025 3.975 23 C -0.073 4.073 24 C -0.181 4.181 25 C -0.066 4.066 26 N -0.196 5.196 27 C -0.055 4.055 28 C -0.171 4.171 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.217 0.783 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.172 0.828 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.175 0.825 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.657 -21.067 0.638 23.183 hybrid contribution 1.004 0.161 1.369 1.705 sum 10.661 -20.906 2.007 23.553 Atomic orbital electron populations 1.69963 1.06084 1.27393 1.48639 1.24927 0.94877 0.99317 0.94735 0.86509 0.79451 0.82479 0.78664 1.20038 1.21086 1.20107 1.21143 0.93058 0.90434 1.53489 0.92157 1.18982 0.87787 0.80995 0.97662 1.45944 1.10667 1.04514 1.77159 1.16121 0.84930 0.81030 0.78317 1.90906 1.13739 1.83703 1.58018 1.47222 1.04107 1.05770 1.79907 1.21077 1.01426 0.80298 0.94873 1.21001 1.01490 0.90617 0.99624 1.21242 0.90444 0.96005 0.92081 1.22000 1.01756 0.93683 1.01824 1.21562 0.95372 0.96631 0.96574 1.22135 0.97240 1.00984 1.00061 1.22826 0.98798 0.87861 0.95834 1.67574 1.11936 1.21201 1.17592 1.20373 0.82162 1.03418 0.91527 1.20802 0.95435 0.93464 0.97569 1.21969 1.00881 0.98842 0.96432 1.22692 0.96252 0.95505 0.92104 1.67670 1.14813 0.99147 1.38014 1.22803 0.93699 0.96930 0.92113 1.22284 0.99486 0.98851 0.96500 0.92382 0.95717 0.95738 0.78282 0.91570 0.88612 0.90424 0.88940 0.84871 0.85027 0.85001 0.82761 0.89227 0.89188 0.85169 0.83101 0.82534 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.41 9.28 -34.44 -0.32 -14.73 16 8 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 9 C 0.27 7.04 5.43 -5.20 -0.03 7.01 16 10 N -0.73 -15.29 5.35 -66.42 -0.36 -15.64 16 11 C 0.69 14.29 8.28 -86.91 -0.72 13.57 16 12 O -0.59 -14.73 15.92 5.29 0.08 -14.65 16 13 N -0.63 -9.49 2.46 -180.80 -0.44 -9.94 16 14 C 0.15 2.00 5.27 -4.04 -0.02 1.98 16 15 C -0.09 -1.06 5.94 -27.88 -0.17 -1.23 16 16 C 0.14 1.64 6.18 -82.59 -0.51 1.13 16 17 C -0.17 -1.54 9.71 -39.44 -0.38 -1.92 16 18 C -0.08 -0.58 10.18 -39.28 -0.40 -0.98 16 19 C -0.18 -1.47 10.11 -39.44 -0.40 -1.87 16 20 C 0.10 1.06 11.18 -17.55 -0.20 0.87 16 21 N -0.47 -6.27 9.88 -9.47 -0.09 -6.36 16 22 C 0.15 1.70 5.41 -5.20 -0.03 1.67 16 23 C -0.06 -0.76 5.50 -104.32 -0.57 -1.33 16 24 C -0.16 -1.70 9.82 -39.44 -0.39 -2.09 16 25 C 0.09 1.04 11.18 -17.54 -0.20 0.85 16 26 N -0.49 -6.68 10.36 -13.25 -0.14 -6.82 16 27 C 0.10 1.36 11.18 -17.55 -0.20 1.16 16 28 C -0.15 -2.04 9.66 -39.44 -0.38 -2.42 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.38 6.87 4.24 -40.82 -0.17 6.70 16 33 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.10 1.64 7.22 -51.93 -0.38 1.26 16 35 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.13 0.87 7.95 -52.49 -0.42 0.46 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.09 1.01 6.32 -51.93 -0.33 0.68 16 42 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 46 H 0.14 2.00 6.38 -52.49 -0.34 1.66 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -35.24 392.64 -10.53 -45.77 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.21 Total: 7.97 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -5.00 Total: 3.36 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -0.29 Total: -63.93 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.65 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.24 -10.53 -45.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438317578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.026 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds