Wall clock time and date at job start Sat Apr 11 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38376 * 119.92763 * 2 1 4 4 C 1.38326 * 120.27785 * 179.72394 * 3 2 1 5 5 C 1.37998 * 120.13800 * 0.54663 * 4 3 2 6 6 C 1.39498 * 119.86257 * 359.72844 * 5 4 3 7 7 C 1.47937 * 120.13975 * 179.97438 * 6 5 4 8 8 N 1.31781 * 126.63210 * 164.70861 * 7 6 5 9 9 N 1.28862 * 109.78140 * 179.85536 * 8 7 6 10 10 C 1.29930 * 109.87775 * 0.47754 * 9 8 7 11 11 N 1.36006 * 126.63879 * 345.01948 * 7 6 5 12 12 C 1.46212 * 129.01559 * 359.86120 * 11 7 6 13 13 C 1.53337 * 108.68897 * 197.05247 * 12 11 7 14 14 H 1.09001 * 109.45017 * 69.75001 * 13 12 11 15 15 C 1.50704 * 109.42061 * 189.67564 * 13 12 11 16 16 O 1.21296 * 120.00098 * 7.29128 * 15 13 12 17 17 N 1.34777 * 119.99868 * 187.28358 * 15 13 12 18 18 C 1.46497 * 119.99699 * 183.37025 * 17 15 13 19 19 C 1.37092 * 119.99889 * 3.37453 * 17 15 13 20 20 H 1.08002 * 120.00280 * 8.19589 * 19 17 15 21 21 C 1.38949 * 119.99901 * 188.20310 * 19 17 15 22 22 N 1.31422 * 119.99931 * 6.40565 * 21 19 17 23 23 Si 1.86801 * 120.00179 * 186.40570 * 21 19 17 24 24 H 1.48501 * 109.46646 * 60.00005 * 23 21 19 25 25 H 1.48497 * 109.47189 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47251 * 299.99767 * 23 21 19 27 27 C 1.53128 * 109.60715 * 309.70361 * 13 12 11 28 28 C 1.50832 * 128.57516 * 179.58983 * 10 9 8 29 29 C 1.37954 * 119.93085 * 180.27063 * 2 1 3 30 30 H 1.09001 * 109.47564 * 269.72763 * 1 2 3 31 31 H 1.08997 * 109.47418 * 149.73131 * 1 2 3 32 32 H 1.08996 * 109.47232 * 29.73134 * 1 2 3 33 33 H 1.07997 * 119.86076 * 359.97438 * 3 2 1 34 34 H 1.07992 * 119.92937 * 180.25603 * 4 3 2 35 35 H 1.08001 * 120.07113 * 179.75170 * 5 4 3 36 36 H 1.09001 * 109.59483 * 316.80679 * 12 11 7 37 37 H 1.08997 * 109.59985 * 77.27857 * 12 11 7 38 38 H 1.09000 * 109.47713 * 354.82984 * 18 17 15 39 39 H 1.08996 * 109.47323 * 114.83336 * 18 17 15 40 40 H 1.09006 * 109.47188 * 234.83025 * 18 17 15 41 41 H 0.96995 * 119.99980 * 180.02562 * 22 21 19 42 42 H 1.08997 * 109.48817 * 309.64624 * 27 13 12 43 43 H 1.08992 * 109.49175 * 189.57225 * 27 13 12 44 44 H 1.08997 * 109.73452 * 315.64669 * 28 10 9 45 45 H 1.09001 * 109.73079 * 76.28602 * 28 10 9 46 46 H 1.08003 * 120.07178 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5806 1.2077 0.0058 5 6 4.2808 0.0186 0.0002 6 6 3.5907 -1.1938 -0.0056 7 6 4.3351 -2.4722 -0.0122 8 7 3.8494 -3.6664 0.2610 9 7 4.7806 -4.5507 0.1548 10 6 5.8984 -3.9775 -0.1772 11 7 5.6545 -2.6417 -0.2956 12 6 6.6540 -1.6386 -0.6598 13 6 7.8591 -2.3505 -1.2859 14 1 7.5793 -2.7477 -2.2617 15 6 8.9913 -1.3694 -1.4494 16 8 8.8993 -0.2538 -0.9823 17 7 10.1061 -1.7317 -2.1146 18 6 11.2360 -0.8041 -2.2101 19 6 10.1827 -2.9681 -2.7017 20 1 9.3077 -3.5996 -2.7470 21 6 11.3861 -3.4090 -3.2385 22 7 12.4789 -2.6980 -3.0733 23 14 11.4506 -5.0122 -4.1950 24 1 10.5447 -4.9252 -5.3685 25 1 12.8398 -5.2559 -4.6597 26 1 11.0184 -6.1297 -3.3178 27 6 8.3067 -3.4988 -0.3772 28 6 7.2488 -4.6102 -0.4037 29 6 2.1953 -1.1955 -0.0056 30 1 -0.3634 -0.0049 1.0276 31 1 -0.3634 -0.8875 -0.5180 32 1 -0.3633 0.8923 -0.5096 33 1 1.6539 2.1325 -0.0004 34 1 4.1136 2.1469 0.0099 35 1 5.3607 0.0265 0.0006 36 1 6.2264 -0.9413 -1.3803 37 1 6.9711 -1.0979 0.2319 38 1 10.9592 0.1527 -1.7673 39 1 12.0917 -1.2175 -1.6762 40 1 11.4980 -0.6572 -3.2579 41 1 13.3189 -3.0055 -3.4484 42 1 8.4228 -3.1315 0.6425 43 1 9.2583 -3.8940 -0.7324 44 1 7.4539 -5.3326 0.3863 45 1 7.2632 -5.1100 -1.3722 46 1 1.6553 -2.1309 -0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449820370.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:46 Heat of formation + Delta-G solvation = 59.252376 kcal Electronic energy + Delta-G solvation = -29573.122203 eV Core-core repulsion = 25656.497896 eV Total energy + Delta-G solvation = -3916.624307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.29774 -40.88920 -40.23065 -37.85764 -36.81738 -35.27486 -33.59602 -33.36706 -32.81360 -31.82238 -29.63162 -28.56145 -27.87270 -26.84151 -25.27387 -24.83156 -24.08734 -22.42783 -21.90757 -21.21020 -20.61401 -18.88259 -18.44006 -17.81466 -17.51420 -17.25085 -16.51633 -16.29702 -16.13577 -16.01167 -15.91220 -15.49630 -15.12784 -14.85456 -14.67921 -14.63893 -14.59121 -13.99496 -13.71648 -13.43956 -13.33822 -13.24163 -13.04771 -13.02862 -12.78639 -12.68470 -12.55328 -12.45409 -12.22276 -12.14579 -12.13582 -12.09865 -11.83906 -11.46887 -11.24644 -11.04476 -10.75557 -10.38561 -9.92550 -9.76940 -9.35460 -8.22764 -5.92321 -0.24834 0.34854 0.98034 1.26297 1.44001 1.51552 1.59194 1.72125 1.91549 2.27240 2.74806 2.78068 3.00742 3.14350 3.20728 3.38722 3.60518 3.66455 3.80777 3.90527 4.03518 4.09046 4.15633 4.24045 4.33243 4.34302 4.37765 4.45539 4.61732 4.68862 4.71140 4.85530 4.85751 4.88538 4.91342 4.99289 5.02522 5.06185 5.12378 5.18642 5.27720 5.39935 5.42316 5.44913 5.45977 5.57115 5.73919 5.74677 5.94971 6.37229 7.07372 7.51325 7.52966 7.89905 8.70202 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.003078 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.187609 B = 9095.537424 C =10210.191566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.102 4.102 4 C -0.113 4.113 5 C -0.130 4.130 6 C -0.035 4.035 7 C 0.215 3.785 8 N -0.315 5.315 9 N -0.321 5.321 10 C 0.188 3.812 11 N -0.467 5.467 12 C 0.133 3.867 13 C -0.091 4.091 14 H 0.102 0.898 15 C 0.449 3.551 16 O -0.639 6.639 17 N -0.446 5.446 18 C 0.131 3.869 19 C -0.348 4.348 20 H 0.121 0.879 21 C -0.004 4.004 22 N -0.899 5.899 23 Si 0.987 3.013 24 H -0.270 1.270 25 H -0.289 1.289 26 H -0.254 1.254 27 C -0.112 4.112 28 C -0.025 4.025 29 C -0.089 4.089 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.270 0.730 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.315 3.236 3.368 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.120 4.120 4 C -0.130 4.130 5 C -0.149 4.149 6 C -0.037 4.037 7 C -0.049 4.049 8 N -0.156 5.156 9 N -0.160 5.160 10 C -0.080 4.080 11 N -0.156 5.156 12 C 0.011 3.989 13 C -0.113 4.113 14 H 0.120 0.880 15 C 0.238 3.762 16 O -0.530 6.530 17 N -0.162 5.162 18 C -0.013 4.013 19 C -0.475 4.475 20 H 0.139 0.861 21 C -0.206 4.206 22 N -0.538 5.538 23 Si 0.810 3.190 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.178 1.178 27 C -0.150 4.150 28 C -0.064 4.064 29 C -0.109 4.109 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.141 0.859 45 H 0.133 0.867 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.051 2.644 3.878 16.724 hybrid contribution 1.729 0.298 -0.918 1.980 sum -14.322 2.942 2.959 14.918 Atomic orbital electron populations 1.20859 0.88459 1.04024 1.03504 1.20215 0.97968 0.91997 0.98529 1.21593 0.93895 0.98738 0.97786 1.21360 0.94963 0.97808 0.98912 1.21573 1.00557 0.92101 1.00706 1.17605 0.93290 0.87085 1.05740 1.23061 0.81998 0.96556 1.03331 1.74615 1.23787 0.96265 1.20884 1.73892 0.97098 1.25200 1.19844 1.25493 0.99504 0.81114 1.01878 1.46432 1.09112 1.09292 1.50813 1.21899 0.86223 0.88735 1.02033 1.21189 0.92328 0.96230 1.01555 0.88030 1.19944 0.85149 0.88260 0.82883 1.90516 1.82762 1.23606 1.56088 1.43866 1.13033 1.14903 1.44399 1.21370 0.88604 0.90618 1.00664 1.20130 0.98146 0.93359 1.35870 0.86127 1.26153 0.94376 1.02244 0.97821 1.70265 1.00110 1.39594 1.43788 0.85060 0.77244 0.77929 0.78754 1.19527 1.21433 1.17816 1.21666 1.00540 0.93667 0.99135 1.20432 0.82522 0.97235 1.06187 1.21142 0.91541 0.99382 0.98876 0.89922 0.91177 0.89464 0.82358 0.83182 0.85946 0.88076 0.88525 0.94607 0.91507 0.93848 0.91999 0.91617 0.87506 0.85851 0.86735 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.63 16 2 C -0.09 -1.61 5.87 -19.90 -0.12 -1.73 16 3 C -0.10 -1.69 9.69 22.32 0.22 -1.47 16 4 C -0.11 -2.23 10.03 22.23 0.22 -2.01 16 5 C -0.13 -3.33 9.02 22.52 0.20 -3.12 16 6 C -0.03 -0.99 5.87 -20.09 -0.12 -1.11 16 7 C 0.22 7.26 7.74 136.60 1.06 8.31 16 8 N -0.31 -11.68 12.03 -51.40 -0.62 -12.30 16 9 N -0.32 -11.79 12.18 -49.86 -0.61 -12.40 16 10 C 0.19 6.11 7.77 137.93 1.07 7.18 16 11 N -0.47 -15.24 3.16 -505.52 -1.60 -16.84 16 12 C 0.13 4.25 3.90 86.55 0.34 4.59 16 13 C -0.09 -3.11 1.69 -11.38 -0.02 -3.13 16 14 H 0.10 3.38 7.23 -2.39 -0.02 3.37 16 15 C 0.45 19.30 6.95 87.66 0.61 19.91 16 16 O -0.64 -30.39 15.12 -3.08 -0.05 -30.44 16 17 N -0.45 -20.62 3.02 -658.89 -1.99 -22.61 16 18 C 0.13 6.19 8.88 127.77 1.13 7.33 16 19 C -0.35 -15.41 7.82 84.04 0.66 -14.76 16 20 H 0.12 4.76 5.55 -2.91 -0.02 4.75 16 21 C 0.00 -0.17 5.40 84.92 0.46 0.29 16 22 N -0.90 -43.48 9.64 21.66 0.21 -43.27 16 23 Si 0.99 35.62 29.56 68.60 2.03 37.65 16 24 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 25 H -0.29 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 27 C -0.11 -3.37 4.85 30.79 0.15 -3.22 16 28 C -0.02 -0.64 6.34 30.04 0.19 -0.45 16 29 C -0.09 -2.20 9.35 22.52 0.21 -1.99 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 32 H 0.09 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.12 3.30 4.80 -2.91 -0.01 3.29 16 36 H 0.10 3.14 7.02 -2.39 -0.02 3.13 16 37 H 0.10 3.20 7.14 -2.39 -0.02 3.18 16 38 H 0.04 1.66 6.91 -2.39 -0.02 1.64 16 39 H 0.07 3.31 6.70 -2.39 -0.02 3.29 16 40 H 0.04 2.11 7.46 -2.38 -0.02 2.09 16 41 H 0.27 12.51 8.31 -92.71 -0.77 11.74 16 42 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 43 H 0.11 3.47 6.02 -2.39 -0.01 3.46 16 44 H 0.12 2.71 8.14 -2.39 -0.02 2.70 16 45 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.13 3.23 7.95 -2.91 -0.02 3.20 16 Total: -1.00 -61.74 367.16 5.37 -56.37 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 1.02 Total: 29.86 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.98 Total: 13.99 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -4.61 Total: -107.43 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.05 Total: -30.44 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Total: -61.74 5.37 -56.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449820370.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.626 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds