Wall clock time and date at job start Sat Apr 11 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38373 * 119.93077 * 2 1 4 4 C 1.38325 * 120.27979 * 179.97438 * 3 2 1 5 5 C 1.37998 * 120.13921 * 359.74405 * 4 3 2 6 6 C 1.39495 * 119.85883 * 0.50346 * 5 4 3 7 7 C 1.47941 * 120.13926 * 179.76844 * 6 5 4 8 8 N 1.31776 * 126.63435 * 16.87531 * 7 6 5 9 9 N 1.28864 * 109.78502 * 179.97438 * 8 7 6 10 10 C 1.29936 * 109.87771 * 359.96946 * 9 8 7 11 11 N 1.36007 * 126.63625 * 196.86938 * 7 6 5 12 12 C 1.46204 * 129.01908 * 0.12481 * 11 7 6 13 13 C 1.53337 * 108.69480 * 162.95433 * 12 11 7 14 14 H 1.08997 * 109.44663 * 290.28580 * 13 12 11 15 15 C 1.50700 * 109.44774 * 170.34158 * 13 12 11 16 16 O 1.21275 * 120.00285 * 359.94370 * 15 13 12 17 17 N 1.34779 * 119.99546 * 179.97438 * 15 13 12 18 18 C 1.46504 * 119.99502 * 180.02562 * 17 15 13 19 19 C 1.50697 * 109.46630 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00429 * 359.97438 * 19 18 17 21 21 C 1.37886 * 119.99563 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99996 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99675 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47531 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46999 * 120.00001 * 23 21 19 26 26 H 1.48497 * 109.47257 * 239.99982 * 23 21 19 27 27 C 1.53125 * 109.58283 * 50.31250 * 13 12 11 28 28 C 1.50821 * 128.57456 * 180.14477 * 10 9 8 29 29 C 1.37951 * 119.93016 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.47444 * 270.02770 * 1 2 3 31 31 H 1.09003 * 109.46703 * 30.02590 * 1 2 3 32 32 H 1.08996 * 109.47197 * 150.02095 * 1 2 3 33 33 H 1.07995 * 119.86021 * 359.95287 * 3 2 1 34 34 H 1.08001 * 119.93254 * 179.97438 * 4 3 2 35 35 H 1.08006 * 120.06727 * 180.26099 * 5 4 3 36 36 H 1.09003 * 109.59662 * 43.19597 * 12 11 7 37 37 H 1.08998 * 109.73623 * 282.79493 * 12 11 7 38 38 H 0.96998 * 120.00483 * 359.97438 * 17 15 13 39 39 H 1.08997 * 109.47239 * 59.99525 * 18 17 15 40 40 H 1.09001 * 109.46833 * 299.99093 * 18 17 15 41 41 H 0.96999 * 120.00089 * 0.02562 * 22 21 19 42 42 H 1.09001 * 109.49453 * 50.35664 * 27 13 12 43 43 H 1.09003 * 109.49227 * 170.42664 * 27 13 12 44 44 H 1.09005 * 109.73565 * 283.65773 * 28 10 9 45 45 H 1.09003 * 109.73569 * 44.30188 * 28 10 9 46 46 H 1.08004 * 120.07272 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5806 1.2076 0.0005 5 6 4.2807 0.0184 0.0064 6 6 3.5906 -1.1938 0.0012 7 6 4.3350 -2.4723 0.0022 8 7 5.6038 -2.6433 0.3146 9 7 5.9158 -3.8888 0.2059 10 6 4.8787 -4.5724 -0.1757 11 7 3.8422 -3.6986 -0.3188 12 6 2.4910 -4.0666 -0.7390 13 6 2.5386 -5.4561 -1.3855 14 1 3.0583 -5.3940 -2.3416 15 6 1.1339 -5.9537 -1.6094 16 8 0.1884 -5.2675 -1.2840 17 7 0.9284 -7.1617 -2.1707 18 6 -0.4373 -7.6452 -2.3888 19 6 -0.3910 -9.0104 -3.0253 20 1 0.5603 -9.4716 -3.2456 21 6 -1.5635 -9.6707 -3.3262 22 7 -2.7220 -9.1094 -3.0575 23 14 -1.5062 -11.3633 -4.1145 24 1 -0.0916 -11.7698 -4.3122 25 1 -2.1847 -12.3445 -3.2301 26 1 -2.1967 -11.3211 -5.4285 27 6 3.2822 -6.4262 -0.4631 28 6 4.7712 -6.0552 -0.4296 29 6 2.1952 -1.1955 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6540 2.1325 -0.0008 34 1 4.1138 2.1468 0.0001 35 1 5.3608 0.0264 0.0111 36 1 2.1223 -3.3392 -1.4623 37 1 1.8295 -4.0887 0.1271 38 1 1.6846 -7.7107 -2.4308 39 1 -0.9661 -6.9557 -3.0468 40 1 -0.9578 -7.7070 -1.4331 41 1 -2.7517 -8.2306 -2.6478 42 1 2.8678 -6.3614 0.5430 43 1 3.1697 -7.4434 -0.8383 44 1 5.2337 -6.2994 -1.3859 45 1 5.2694 -6.6027 0.3706 46 1 1.6553 -2.1309 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451244298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:56 Heat of formation + Delta-G solvation = 44.078072 kcal Electronic energy + Delta-G solvation = -28815.240685 eV Core-core repulsion = 24897.958371 eV Total energy + Delta-G solvation = -3917.282314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.34492 -39.74472 -39.52020 -36.88019 -34.76547 -34.30138 -33.23014 -32.61449 -31.67471 -30.94314 -28.96543 -27.20167 -27.11301 -24.96076 -24.15169 -23.16307 -22.80867 -22.22860 -20.60468 -20.39462 -19.56636 -17.90210 -17.29454 -16.76122 -16.71152 -16.07424 -15.70369 -15.46701 -15.22047 -15.09804 -14.78174 -14.36363 -14.03303 -13.96269 -13.91095 -13.70471 -13.38344 -13.27741 -12.72904 -12.47950 -12.44908 -12.42034 -12.30863 -12.14006 -11.88124 -11.58955 -11.47051 -11.43160 -11.17175 -11.12473 -10.86518 -10.51068 -10.32333 -10.28238 -9.92921 -9.54185 -9.06141 -8.93277 -8.85310 -8.50793 -8.24624 -6.64340 -4.39496 0.55508 1.06658 1.85254 2.14945 2.69992 2.85571 3.30088 3.33910 3.45360 3.50766 3.54722 3.81217 3.97746 4.14086 4.32317 4.34503 4.42254 4.52347 4.56475 4.75470 4.81309 4.90932 4.95308 5.01050 5.12801 5.14733 5.16348 5.19317 5.25878 5.34311 5.38490 5.44093 5.52880 5.58504 5.66013 5.73568 5.74549 5.87569 5.90770 6.15055 6.18730 6.25916 6.58462 6.65738 6.78292 7.00796 7.02599 7.45460 8.10071 8.20354 8.53386 8.55610 8.62489 9.34083 10.75846 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.002608 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.644298 B =10733.200676 C =12511.291128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.080 4.080 3 C -0.108 4.108 4 C -0.115 4.115 5 C -0.082 4.082 6 C -0.013 4.013 7 C 0.221 3.779 8 N -0.284 5.284 9 N -0.289 5.289 10 C 0.183 3.817 11 N -0.467 5.467 12 C 0.122 3.878 13 C -0.125 4.125 14 H 0.108 0.892 15 C 0.510 3.490 16 O -0.554 6.554 17 N -0.698 5.698 18 C 0.239 3.761 19 C -0.626 4.626 20 H 0.059 0.941 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 1.080 2.920 24 H -0.288 1.288 25 H -0.284 1.284 26 H -0.285 1.285 27 C -0.119 4.119 28 C -0.031 4.031 29 C -0.112 4.112 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.395 0.605 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.273 0.727 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.361 15.342 5.381 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.080 4.080 3 C -0.127 4.127 4 C -0.133 4.133 5 C -0.102 4.102 6 C -0.015 4.015 7 C -0.043 4.043 8 N -0.125 5.125 9 N -0.129 5.129 10 C -0.084 4.084 11 N -0.157 5.157 12 C -0.001 4.001 13 C -0.147 4.147 14 H 0.126 0.874 15 C 0.293 3.707 16 O -0.433 6.433 17 N -0.345 5.345 18 C 0.118 3.882 19 C -0.664 4.664 20 H 0.077 0.923 21 C -0.182 4.182 22 N -0.535 5.535 23 Si 0.908 3.092 24 H -0.214 1.214 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.158 4.158 28 C -0.071 4.071 29 C -0.131 4.131 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.229 0.771 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.110 14.852 5.452 19.923 hybrid contribution 0.011 0.712 0.021 0.712 sum 12.121 15.564 5.473 20.472 Atomic orbital electron populations 1.20847 0.90469 1.03423 1.02777 1.19836 0.96510 0.92517 0.99122 1.21221 0.94322 0.97645 0.99529 1.21102 0.94144 0.97916 1.00162 1.21165 1.00670 0.90558 0.97839 1.17444 0.91837 0.88304 1.03959 1.22633 0.92045 0.86040 1.03596 1.74740 1.08713 1.09704 1.19346 1.74000 1.22990 0.98066 1.17861 1.24920 0.84343 0.95969 1.03132 1.46326 1.12071 1.07123 1.50146 1.21964 0.79386 0.96879 1.01881 1.21670 0.96952 0.94495 1.01574 0.87365 1.19908 0.89238 0.82644 0.78885 1.90685 1.43656 1.56655 1.52314 1.46271 1.11782 1.16914 1.59576 1.19242 0.77717 0.94901 0.96326 1.22086 0.95807 1.02336 1.46178 0.92283 1.25888 0.91714 1.04918 0.95697 1.70712 1.26357 1.17656 1.38771 0.83377 0.75241 0.74035 0.76569 1.21361 1.21054 1.21076 1.21761 0.93478 0.99884 1.00671 1.20291 0.97316 0.84685 1.04790 1.21362 0.92548 0.98944 1.00289 0.90827 0.91215 0.90901 0.85593 0.85219 0.84681 0.87753 0.87761 0.77133 0.96346 0.96286 0.91640 0.90161 0.88475 0.88138 0.87504 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.08 -0.78 5.87 -104.68 -0.61 -1.39 16 3 C -0.11 -0.92 9.69 -39.50 -0.38 -1.30 16 4 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 5 C -0.08 -0.87 9.71 -39.20 -0.38 -1.25 16 6 C -0.01 -0.16 5.87 -104.97 -0.62 -0.77 16 7 C 0.22 3.09 7.73 -154.76 -1.20 1.89 16 8 N -0.28 -4.48 12.05 32.40 0.39 -4.09 16 9 N -0.29 -4.47 12.18 32.89 0.40 -4.07 16 10 C 0.18 2.36 7.77 -154.65 -1.20 1.16 16 11 N -0.47 -6.01 3.16 -111.14 -0.35 -6.36 16 12 C 0.12 1.46 3.83 -4.03 -0.02 1.44 16 13 C -0.12 -1.47 2.54 -91.53 -0.23 -1.70 16 14 H 0.11 1.13 8.12 -51.93 -0.42 0.71 16 15 C 0.51 8.52 7.15 -10.98 -0.08 8.44 16 16 O -0.55 -11.26 15.82 5.56 0.09 -11.17 16 17 N -0.70 -12.82 5.37 -61.47 -0.33 -13.15 16 18 C 0.24 5.78 4.74 -5.19 -0.02 5.76 16 19 C -0.63 -16.09 9.28 -34.44 -0.32 -16.41 16 20 H 0.06 1.44 7.60 -52.49 -0.40 1.04 16 21 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 22 N -0.90 -26.09 13.65 55.43 0.76 -25.33 16 23 Si 1.08 23.39 29.90 -169.99 -5.08 18.31 16 24 H -0.29 -5.82 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.12 -1.17 5.22 -26.41 -0.14 -1.30 16 28 C -0.03 -0.28 6.34 -27.57 -0.17 -0.46 16 29 C -0.11 -1.25 8.64 -39.20 -0.34 -1.59 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.14 1.38 7.96 -52.48 -0.42 0.96 16 36 H 0.10 1.23 7.15 -51.93 -0.37 0.86 16 37 H 0.10 1.30 7.18 -51.93 -0.37 0.92 16 38 H 0.40 6.16 7.65 -40.82 -0.31 5.85 16 39 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 40 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 41 H 0.27 7.97 7.22 -40.82 -0.29 7.67 16 42 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 43 H 0.10 0.85 7.31 -51.93 -0.38 0.47 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.13 1.44 4.95 -52.48 -0.26 1.19 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -33.29 379.33 -10.49 -43.78 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.23 Total: 5.29 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -5.85 Total: -8.92 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.87 Total: -53.01 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.08 Total: 18.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.29 -10.49 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451244298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.862 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds