Wall clock time and date at job start Sat Apr 11 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.37752 * 120.04064 * 2 1 4 4 C 1.39022 * 120.07960 * 179.97438 * 3 2 1 5 5 N 1.39868 * 119.92294 * 180.02562 * 4 3 2 6 6 C 1.34799 * 126.85048 * 179.71334 * 5 4 3 7 7 N 1.30823 * 108.02356 * 179.87213 * 6 5 4 8 8 C 1.33287 * 109.84223 * 0.40517 * 7 6 5 9 9 N 1.30721 * 109.02034 * 359.74994 * 8 7 6 10 10 C 1.39067 * 120.15873 * 0.28781 * 4 3 2 11 11 C 1.37705 * 120.07369 * 359.43507 * 10 4 3 12 12 C 1.39684 * 120.04012 * 179.97438 * 2 1 3 13 13 C 1.47667 * 120.07896 * 359.97438 * 12 2 1 14 14 O 1.21580 * 120.00027 * 48.87816 * 13 12 2 15 15 N 1.34776 * 120.00132 * 228.87552 * 13 12 2 16 16 C 1.46928 * 120.63212 * 5.50866 * 15 13 12 17 17 C 1.53617 * 108.54604 * 126.36670 * 16 15 13 18 18 C 1.53040 * 109.24125 * 54.85571 * 17 16 15 19 19 C 1.50697 * 109.45063 * 178.49651 * 18 17 16 20 20 H 1.07999 * 120.00188 * 120.06585 * 19 18 17 21 21 C 1.37883 * 120.00162 * 300.06470 * 19 18 17 22 22 N 1.31515 * 120.00159 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99655 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47147 * 89.99952 * 23 21 19 25 25 H 1.48507 * 109.46627 * 209.99912 * 23 21 19 26 26 H 1.48496 * 109.47074 * 329.99870 * 23 21 19 27 27 C 1.53042 * 109.54074 * 298.51288 * 18 17 16 28 28 C 1.46926 * 120.62966 * 185.78934 * 15 13 12 29 29 H 1.09005 * 109.47777 * 95.41412 * 1 2 3 30 30 H 1.09000 * 109.47495 * 215.41637 * 1 2 3 31 31 H 1.09002 * 109.47481 * 335.41571 * 1 2 3 32 32 H 1.08005 * 119.95921 * 359.96160 * 3 2 1 33 33 H 1.08003 * 125.99038 * 0.02562 * 6 5 4 34 34 H 1.08004 * 125.48983 * 179.71028 * 8 7 6 35 35 H 1.08004 * 119.95920 * 179.70199 * 10 4 3 36 36 H 1.08007 * 120.03925 * 180.27879 * 11 10 4 37 37 H 1.09000 * 109.58795 * 246.20572 * 16 15 13 38 38 H 1.09006 * 109.58353 * 6.62175 * 16 15 13 39 39 H 1.09004 * 109.63547 * 294.86637 * 17 16 15 40 40 H 1.08996 * 109.43226 * 174.72522 * 17 16 15 41 41 H 1.09007 * 109.45797 * 58.53413 * 18 17 16 42 42 H 0.96997 * 120.00227 * 180.02562 * 22 21 19 43 43 H 1.08997 * 109.49637 * 301.41318 * 27 18 17 44 44 H 1.09000 * 109.52372 * 181.32942 * 27 18 17 45 45 H 1.08996 * 109.58985 * 353.36938 * 28 15 13 46 46 H 1.09002 * 109.58875 * 113.65992 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.1925 0.0000 4 6 3.5867 1.1934 0.0005 5 7 4.2836 2.4061 0.0011 6 6 5.6216 2.5696 0.0070 7 7 5.8726 3.8536 0.0025 8 6 4.7289 4.5381 0.0026 9 7 3.7287 3.6964 0.0018 10 6 4.2862 -0.0085 -0.0050 11 6 3.6034 -1.2043 0.0008 12 6 2.2062 -1.2092 0.0005 13 6 1.4705 -2.4896 0.0017 14 8 0.5669 -2.6722 -0.7910 15 7 1.8007 -3.4558 0.8814 16 6 2.8068 -3.2078 1.9230 17 6 2.1943 -3.5586 3.2874 18 6 1.6698 -4.9958 3.2502 19 6 1.1010 -5.3575 4.5981 20 1 0.0632 -5.6430 4.6873 21 6 1.9054 -5.3238 5.7174 22 7 1.4089 -5.6390 6.8938 23 14 3.7005 -4.8307 5.5630 24 1 3.8264 -3.3609 5.7331 25 1 4.4951 -5.5203 6.6110 26 1 4.2068 -5.2189 4.2221 27 6 0.5756 -5.1141 2.1867 28 6 1.1658 -4.7790 0.8132 29 1 -0.3635 -0.0970 -1.0231 30 1 -0.3634 -0.8375 0.5955 31 1 -0.3634 0.9345 0.4275 32 1 1.6565 2.1278 -0.0006 33 1 6.3576 1.7792 0.0119 34 1 4.6425 5.6146 0.0039 35 1 5.3662 -0.0040 -0.0094 36 1 4.1472 -2.1375 0.0011 37 1 3.6823 -3.8311 1.7413 38 1 3.0951 -2.1566 1.9097 39 1 1.3723 -2.8769 3.5061 40 1 2.9570 -3.4696 4.0610 41 1 2.4874 -5.6746 3.0072 42 1 1.9746 -5.6150 7.6813 43 1 -0.2310 -4.4177 2.4157 44 1 0.1858 -6.1319 2.1767 45 1 0.3709 -4.7650 0.0676 46 1 1.9097 -5.5276 0.5404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541050173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:04 Heat of formation + Delta-G solvation = 92.241786 kcal Electronic energy + Delta-G solvation = -29344.709557 eV Core-core repulsion = 25429.515779 eV Total energy + Delta-G solvation = -3915.193778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.72729 -40.72023 -38.95920 -37.15651 -34.81281 -33.79279 -32.86761 -31.82047 -31.52632 -30.86620 -29.90173 -27.59734 -26.52239 -24.90942 -23.39459 -23.08743 -22.70112 -21.80427 -21.25657 -20.20388 -18.89353 -18.39186 -17.39839 -16.75941 -16.38896 -16.26599 -16.00210 -15.61705 -14.97139 -14.82000 -14.58377 -14.40386 -14.08564 -13.87919 -13.58958 -13.45487 -13.27089 -12.90558 -12.84485 -12.74745 -12.60502 -12.49534 -12.13890 -12.08002 -11.98501 -11.45128 -11.14059 -10.98808 -10.80818 -10.55785 -10.31533 -10.26071 -10.25280 -9.85058 -9.73697 -9.41998 -9.25158 -9.13483 -8.71798 -8.62566 -8.30217 -6.15330 -4.14954 0.13412 0.88500 1.46212 1.74585 2.47279 2.67640 3.05257 3.15890 3.24786 3.30693 3.40417 3.80983 3.93725 4.30358 4.30727 4.37149 4.44659 4.57689 4.73145 4.92007 5.08962 5.10531 5.25663 5.33210 5.44294 5.48479 5.52327 5.57670 5.63732 5.66868 5.75254 5.76194 5.87113 5.89213 5.92854 5.96613 6.09038 6.15148 6.21588 6.22093 6.52201 6.56381 6.57388 6.67289 6.80438 7.09998 7.39971 7.54264 7.55170 7.66810 8.20107 8.43859 8.89215 9.46236 10.98099 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003171 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.031356 B = 8826.560559 C =10177.086178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.010 4.010 3 C -0.117 4.117 4 C 0.165 3.835 5 N -0.329 5.329 6 C 0.263 3.737 7 N -0.538 5.538 8 C 0.206 3.794 9 N -0.312 5.312 10 C -0.145 4.145 11 C -0.057 4.057 12 C -0.124 4.124 13 C 0.559 3.441 14 O -0.539 6.539 15 N -0.593 5.593 16 C 0.096 3.904 17 C -0.134 4.134 18 C 0.015 3.985 19 C -0.514 4.514 20 H 0.074 0.926 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.885 3.115 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.265 1.265 27 C -0.113 4.113 28 C 0.108 3.892 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.224 0.776 34 H 0.224 0.776 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.264 0.736 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.598 14.194 -15.465 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.012 4.012 3 C -0.137 4.137 4 C 0.072 3.928 5 N -0.112 5.112 6 C -0.032 4.032 7 N -0.264 5.264 8 C -0.096 4.096 9 N -0.137 5.137 10 C -0.166 4.166 11 C -0.076 4.076 12 C -0.128 4.128 13 C 0.346 3.654 14 O -0.418 6.418 15 N -0.325 5.325 16 C -0.027 4.027 17 C -0.172 4.172 18 C -0.004 4.004 19 C -0.552 4.552 20 H 0.092 0.908 21 C -0.133 4.133 22 N -0.538 5.538 23 Si 0.715 3.285 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.190 1.190 27 C -0.151 4.151 28 C -0.013 4.013 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.240 0.760 34 H 0.240 0.760 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.722 14.438 -15.681 22.350 hybrid contribution 1.314 0.160 0.333 1.365 sum 8.036 14.598 -15.348 22.655 Atomic orbital electron populations 1.20882 0.89391 1.03209 1.03821 1.19826 0.97040 0.90485 0.93840 1.20725 0.91326 0.98995 1.02690 1.17640 0.91744 0.81552 1.01835 1.47705 1.05759 1.04962 1.52815 1.26268 0.85065 0.96097 0.95737 1.70649 1.29265 1.02295 1.24146 1.26210 0.84881 1.01376 0.97177 1.78160 1.22601 0.86966 1.25996 1.20658 1.00316 0.89957 1.05678 1.21135 0.92672 0.98034 0.95790 1.19984 0.93864 0.93811 1.05106 1.18122 0.83026 0.83154 0.81072 1.90770 1.30179 1.80575 1.40226 1.48095 1.41064 1.13030 1.30292 1.22216 0.90645 1.01009 0.88806 1.22458 1.00269 1.01446 0.93061 1.19135 0.94509 0.91241 0.95526 1.21038 0.98730 1.45760 0.89637 0.90806 1.25054 0.98256 0.94753 0.95272 1.69894 1.36347 1.48731 0.98795 0.86880 0.85768 0.78104 0.77711 1.20563 1.22402 1.18959 1.21825 0.99266 1.01428 0.92590 1.21832 0.97642 0.81970 0.99869 0.89660 0.90493 0.91192 0.83820 0.75967 0.76017 0.84433 0.83914 0.91521 0.90403 0.91566 0.92358 0.95357 0.92609 0.92209 0.91191 0.89629 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.86 36.00 0.32 -1.02 16 2 C -0.01 -0.12 5.90 -104.26 -0.62 -0.74 16 3 C -0.12 -1.30 9.29 -39.47 -0.37 -1.67 16 4 C 0.17 1.70 6.70 -83.59 -0.56 1.14 16 5 N -0.33 -3.38 3.81 -11.77 -0.04 -3.43 16 6 C 0.26 2.22 11.97 -90.33 -1.08 1.14 16 7 N -0.54 -5.35 11.19 -15.73 -0.18 -5.52 16 8 C 0.21 1.89 13.03 -91.77 -1.20 0.70 16 9 N -0.31 -3.46 12.03 29.30 0.35 -3.10 16 10 C -0.15 -1.24 9.45 -39.47 -0.37 -1.61 16 11 C -0.06 -0.57 7.55 -39.22 -0.30 -0.87 16 12 C -0.12 -1.57 4.81 -104.95 -0.51 -2.07 16 13 C 0.56 8.50 6.32 -12.41 -0.08 8.42 16 14 O -0.54 -9.50 15.19 5.30 0.08 -9.42 16 15 N -0.59 -9.10 2.97 -173.68 -0.52 -9.61 16 16 C 0.10 1.43 5.30 -3.49 -0.02 1.41 16 17 C -0.13 -2.59 4.86 -26.39 -0.13 -2.72 16 18 C 0.01 0.32 1.65 -91.73 -0.15 0.16 16 19 C -0.51 -13.64 9.14 -34.44 -0.31 -13.95 16 20 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 21 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 22 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 23 Si 0.88 20.49 24.38 -169.99 -4.14 16.35 16 24 H -0.28 -6.24 6.85 56.52 0.39 -5.85 16 25 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.26 -5.67 6.53 56.52 0.37 -5.30 16 27 C -0.11 -2.08 5.30 -26.61 -0.14 -2.22 16 28 C 0.11 1.70 6.44 -3.71 -0.02 1.67 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.02 7.06 -51.93 -0.37 0.66 16 31 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 32 H 0.14 1.53 7.72 -52.48 -0.41 1.13 16 33 H 0.22 0.89 7.08 -52.48 -0.37 0.52 16 34 H 0.22 1.16 8.06 -52.48 -0.42 0.73 16 35 H 0.14 0.70 6.79 -52.48 -0.36 0.34 16 36 H 0.14 1.21 7.36 -52.48 -0.39 0.82 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.02 5.15 -51.93 -0.27 0.75 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.19 3.24 -51.93 -0.17 1.02 16 41 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -33.34 365.90 -9.83 -43.16 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.04 Total: 2.44 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -5.63 Total: -10.43 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.39 Total: -47.61 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.14 Total: 16.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.34 -9.83 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541050173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.405 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds