Wall clock time and date at job start Sat Apr 11 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.37752 * 120.04064 * 2 1 4 4 C 1.39022 * 120.07960 * 179.97438 * 3 2 1 5 5 N 1.39868 * 119.92294 * 180.02562 * 4 3 2 6 6 C 1.34799 * 126.85048 * 179.71334 * 5 4 3 7 7 N 1.30823 * 108.02356 * 179.87213 * 6 5 4 8 8 C 1.33287 * 109.84223 * 0.40517 * 7 6 5 9 9 N 1.30721 * 109.02034 * 359.74994 * 8 7 6 10 10 C 1.39067 * 120.15873 * 0.28781 * 4 3 2 11 11 C 1.37705 * 120.07369 * 359.43507 * 10 4 3 12 12 C 1.39684 * 120.04012 * 179.97438 * 2 1 3 13 13 C 1.47667 * 120.07896 * 359.97438 * 12 2 1 14 14 O 1.21580 * 120.00027 * 48.87816 * 13 12 2 15 15 N 1.34776 * 120.00132 * 228.87552 * 13 12 2 16 16 C 1.46928 * 120.63212 * 5.50866 * 15 13 12 17 17 C 1.53617 * 108.54604 * 126.36670 * 16 15 13 18 18 C 1.53040 * 109.24125 * 54.85571 * 17 16 15 19 19 C 1.50697 * 109.45063 * 178.49651 * 18 17 16 20 20 H 1.07999 * 120.00188 * 120.06585 * 19 18 17 21 21 C 1.37883 * 120.00162 * 300.06470 * 19 18 17 22 22 N 1.31515 * 120.00159 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99655 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47147 * 89.99952 * 23 21 19 25 25 H 1.48507 * 109.46627 * 209.99912 * 23 21 19 26 26 H 1.48496 * 109.47074 * 329.99870 * 23 21 19 27 27 C 1.53042 * 109.54074 * 298.51288 * 18 17 16 28 28 C 1.46926 * 120.62966 * 185.78934 * 15 13 12 29 29 H 1.09005 * 109.47777 * 95.41412 * 1 2 3 30 30 H 1.09000 * 109.47495 * 215.41637 * 1 2 3 31 31 H 1.09002 * 109.47481 * 335.41571 * 1 2 3 32 32 H 1.08005 * 119.95921 * 359.96160 * 3 2 1 33 33 H 1.08003 * 125.99038 * 0.02562 * 6 5 4 34 34 H 1.08004 * 125.48983 * 179.71028 * 8 7 6 35 35 H 1.08004 * 119.95920 * 179.70199 * 10 4 3 36 36 H 1.08007 * 120.03925 * 180.27879 * 11 10 4 37 37 H 1.09000 * 109.58795 * 246.20572 * 16 15 13 38 38 H 1.09006 * 109.58353 * 6.62175 * 16 15 13 39 39 H 1.09004 * 109.63547 * 294.86637 * 17 16 15 40 40 H 1.08996 * 109.43226 * 174.72522 * 17 16 15 41 41 H 1.09007 * 109.45797 * 58.53413 * 18 17 16 42 42 H 0.96997 * 120.00227 * 180.02562 * 22 21 19 43 43 H 1.08997 * 109.49637 * 301.41318 * 27 18 17 44 44 H 1.09000 * 109.52372 * 181.32942 * 27 18 17 45 45 H 1.08996 * 109.58985 * 353.36938 * 28 15 13 46 46 H 1.09002 * 109.58875 * 113.65992 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.1925 0.0000 4 6 3.5867 1.1934 0.0005 5 7 4.2836 2.4061 0.0011 6 6 5.6216 2.5696 0.0070 7 7 5.8726 3.8536 0.0025 8 6 4.7289 4.5381 0.0026 9 7 3.7287 3.6964 0.0018 10 6 4.2862 -0.0085 -0.0050 11 6 3.6034 -1.2043 0.0008 12 6 2.2062 -1.2092 0.0005 13 6 1.4705 -2.4896 0.0017 14 8 0.5669 -2.6722 -0.7910 15 7 1.8007 -3.4558 0.8814 16 6 2.8068 -3.2078 1.9230 17 6 2.1943 -3.5586 3.2874 18 6 1.6698 -4.9958 3.2502 19 6 1.1010 -5.3575 4.5981 20 1 0.0632 -5.6430 4.6873 21 6 1.9054 -5.3238 5.7174 22 7 1.4089 -5.6390 6.8938 23 14 3.7005 -4.8307 5.5630 24 1 3.8264 -3.3609 5.7331 25 1 4.4951 -5.5203 6.6110 26 1 4.2068 -5.2189 4.2221 27 6 0.5756 -5.1141 2.1867 28 6 1.1658 -4.7790 0.8132 29 1 -0.3635 -0.0970 -1.0231 30 1 -0.3634 -0.8375 0.5955 31 1 -0.3634 0.9345 0.4275 32 1 1.6565 2.1278 -0.0006 33 1 6.3576 1.7792 0.0119 34 1 4.6425 5.6146 0.0039 35 1 5.3662 -0.0040 -0.0094 36 1 4.1472 -2.1375 0.0011 37 1 3.6823 -3.8311 1.7413 38 1 3.0951 -2.1566 1.9097 39 1 1.3723 -2.8769 3.5061 40 1 2.9570 -3.4696 4.0610 41 1 2.4874 -5.6746 3.0072 42 1 1.9746 -5.6150 7.6813 43 1 -0.2310 -4.4177 2.4157 44 1 0.1858 -6.1319 2.1767 45 1 0.3709 -4.7650 0.0676 46 1 1.9097 -5.5276 0.5404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541050173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:02 Heat of formation + Delta-G solvation = 73.595051 kcal Electronic energy + Delta-G solvation = -29345.518140 eV Core-core repulsion = 25429.515779 eV Total energy + Delta-G solvation = -3916.002361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.38570 -41.74842 -39.95104 -38.51180 -35.61300 -35.37339 -33.89518 -33.25134 -32.41425 -32.12384 -30.83592 -28.65262 -27.93588 -25.86179 -24.42163 -24.38203 -23.83251 -22.70507 -22.10064 -21.41814 -20.14440 -19.08071 -18.88934 -18.41569 -17.42747 -17.00302 -16.88506 -16.59821 -16.40554 -15.82212 -15.62364 -15.28880 -15.09637 -14.96256 -14.91329 -14.72535 -14.34147 -14.25318 -14.09619 -13.78970 -13.66756 -13.55340 -13.41749 -13.34169 -12.97405 -12.79816 -12.30249 -12.19361 -12.08925 -11.89715 -11.70524 -11.48535 -11.25518 -11.18332 -11.01684 -11.00788 -10.87708 -10.64319 -9.99353 -9.66968 -9.43261 -8.26880 -6.32310 -0.62218 0.14034 0.74327 1.09708 1.33204 1.40355 1.51241 1.59680 1.84699 1.98341 2.36503 2.55416 3.08266 3.24180 3.34055 3.36858 3.63710 3.80938 3.85960 3.98615 4.04609 4.09879 4.19918 4.22634 4.27100 4.40203 4.45370 4.52414 4.57753 4.64189 4.71722 4.73536 4.81480 4.90823 4.93667 4.95762 5.03007 5.08230 5.12097 5.21676 5.27605 5.34286 5.40939 5.48148 5.57408 5.68559 5.75500 5.91018 6.32681 6.37274 6.75296 6.90836 7.04902 7.33309 8.90401 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003171 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.031356 B = 8826.560559 C =10177.086178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.022 4.022 3 C -0.126 4.126 4 C 0.164 3.836 5 N -0.341 5.341 6 C 0.272 3.728 7 N -0.562 5.562 8 C 0.208 3.792 9 N -0.349 5.349 10 C -0.129 4.129 11 C -0.051 4.051 12 C -0.146 4.146 13 C 0.561 3.439 14 O -0.571 6.571 15 N -0.596 5.596 16 C 0.104 3.896 17 C -0.133 4.133 18 C 0.015 3.985 19 C -0.522 4.522 20 H 0.023 0.977 21 C 0.002 3.998 22 N -0.957 5.957 23 Si 0.952 3.048 24 H -0.263 1.263 25 H -0.305 1.305 26 H -0.225 1.225 27 C -0.108 4.108 28 C 0.117 3.883 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.268 0.732 34 H 0.251 0.749 35 H 0.183 0.817 36 H 0.168 0.832 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.039 0.961 42 H 0.264 0.736 43 H 0.036 0.964 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.054 15.465 -17.469 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.024 4.024 3 C -0.146 4.146 4 C 0.071 3.929 5 N -0.125 5.125 6 C -0.022 4.022 7 N -0.288 5.288 8 C -0.094 4.094 9 N -0.174 5.174 10 C -0.149 4.149 11 C -0.070 4.070 12 C -0.150 4.150 13 C 0.350 3.650 14 O -0.452 6.452 15 N -0.328 5.328 16 C -0.018 4.018 17 C -0.171 4.171 18 C -0.004 4.004 19 C -0.560 4.560 20 H 0.042 0.958 21 C -0.194 4.194 22 N -0.597 5.597 23 Si 0.777 3.223 24 H -0.189 1.189 25 H -0.233 1.233 26 H -0.148 1.148 27 C -0.146 4.146 28 C -0.005 4.005 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.157 0.843 33 H 0.283 0.717 34 H 0.267 0.733 35 H 0.200 0.800 36 H 0.185 0.815 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.170 15.724 -17.719 26.191 hybrid contribution -0.192 -0.195 0.979 1.017 sum 10.978 15.528 -16.739 25.335 Atomic orbital electron populations 1.20817 0.90064 1.02911 1.03202 1.19808 0.96847 0.90942 0.94796 1.20677 0.92219 0.98343 1.03393 1.17857 0.91526 0.82446 1.01093 1.47760 1.06435 1.04628 1.53678 1.27191 0.84928 0.96707 0.93389 1.70697 1.29616 1.03258 1.25217 1.26845 0.84411 1.02571 0.95600 1.78133 1.23948 0.87780 1.27581 1.21074 1.02352 0.88285 1.03168 1.21410 0.91301 0.99678 0.94654 1.19891 0.95204 0.92240 1.07677 1.18516 0.82490 0.83694 0.80301 1.90750 1.31666 1.81190 1.41561 1.48130 1.41246 1.12854 1.30534 1.22241 0.90687 1.03268 0.85592 1.22303 0.99702 0.99071 0.96049 1.19098 0.95290 0.92985 0.92997 1.21404 0.96780 1.45015 0.92751 0.95831 1.26072 1.04036 0.94748 0.94512 1.70086 1.38572 1.51098 0.99976 0.85800 0.78773 0.78397 0.79287 1.18914 1.23320 1.14818 1.21707 0.98070 1.00816 0.93995 1.21695 0.98342 0.83113 0.97326 0.90102 0.92885 0.89728 0.84316 0.71687 0.73347 0.79980 0.81484 0.88465 0.87909 0.93578 0.92807 0.94274 0.92720 0.94476 0.91503 0.89849 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 8.86 71.23 0.63 -2.05 16 2 C -0.02 -0.52 5.90 -19.63 -0.12 -0.63 16 3 C -0.13 -2.62 9.29 22.34 0.21 -2.41 16 4 C 0.16 2.84 6.70 38.25 0.26 3.09 16 5 N -0.34 -5.96 3.81 -191.16 -0.73 -6.69 16 6 C 0.27 3.45 11.97 180.25 2.16 5.61 16 7 N -0.56 -9.45 11.19 -203.69 -2.28 -11.73 16 8 C 0.21 3.37 13.03 180.75 2.35 5.72 16 9 N -0.35 -7.12 12.03 -61.21 -0.74 -7.86 16 10 C -0.13 -1.51 9.45 22.34 0.21 -1.30 16 11 C -0.05 -0.78 7.55 22.50 0.17 -0.61 16 12 C -0.15 -3.36 4.81 -20.08 -0.10 -3.46 16 13 C 0.56 16.18 6.32 86.73 0.55 16.73 16 14 O -0.57 -20.00 15.19 -3.97 -0.06 -20.06 16 15 N -0.60 -16.80 2.97 -821.66 -2.44 -19.24 16 16 C 0.10 2.67 5.30 86.51 0.46 3.13 16 17 C -0.13 -4.84 4.86 30.82 0.15 -4.69 16 18 C 0.02 0.63 1.65 -11.51 -0.02 0.61 16 19 C -0.52 -28.68 9.14 25.60 0.23 -28.45 16 20 H 0.02 1.47 7.99 -2.91 -0.02 1.45 16 21 C 0.00 0.13 5.45 84.66 0.46 0.60 16 22 N -0.96 -59.19 13.96 21.45 0.30 -58.89 16 23 Si 0.95 41.12 24.38 68.60 1.67 42.80 16 24 H -0.26 -10.67 6.85 99.48 0.68 -9.99 16 25 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 26 H -0.23 -8.27 6.53 99.48 0.65 -7.62 16 27 C -0.11 -3.99 5.30 30.67 0.16 -3.83 16 28 C 0.12 3.47 6.44 86.36 0.56 4.02 16 29 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.05 1.48 7.06 -2.39 -0.02 1.47 16 31 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 32 H 0.14 2.92 7.72 -2.91 -0.02 2.90 16 33 H 0.27 0.46 7.08 -2.91 -0.02 0.44 16 34 H 0.25 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.18 0.46 6.79 -2.91 -0.02 0.44 16 36 H 0.17 1.75 7.36 -2.91 -0.02 1.72 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.10 2.18 5.15 -2.38 -0.01 2.17 16 39 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.05 2.01 3.24 -2.39 -0.01 2.01 16 41 H 0.04 1.58 7.20 -2.38 -0.02 1.56 16 42 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.08 2.54 7.00 -2.39 -0.02 2.52 16 46 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -78.28 365.90 4.99 -73.29 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.93 Total: 16.31 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 8.33 Total: -7.92 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -5.88 Total: -104.41 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.06 Total: -20.06 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.67 Total: 42.80 kcal Total: -78.28 4.99 -73.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541050173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.882 kcal (2) G-P(sol) polarization free energy of solvation -78.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds