Wall clock time and date at job start Sat Apr 11 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99608 * 2 1 4 4 H 1.48504 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46982 * 299.99839 * 3 2 1 6 6 H 1.48498 * 109.47180 * 59.99706 * 3 2 1 7 7 C 1.37878 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.53049 * 109.45809 * 174.99761 * 10 9 7 12 12 C 1.53193 * 109.31154 * 181.38237 * 11 10 9 13 13 N 1.46923 * 108.77506 * 305.36396 * 12 11 10 14 14 C 1.34772 * 120.63373 * 233.58200 * 13 12 11 15 15 O 1.21511 * 120.00019 * 5.83700 * 14 13 12 16 16 C 1.48155 * 120.00523 * 185.83093 * 14 13 12 17 17 C 1.39951 * 120.89236 * 40.50081 * 16 14 13 18 18 C 1.38047 * 119.13724 * 180.02562 * 17 16 14 19 19 N 1.31846 * 120.98310 * 359.72277 * 18 17 16 20 20 C 1.32237 * 121.97152 * 0.56932 * 19 18 17 21 21 N 1.39830 * 119.62165 * 179.70991 * 20 19 18 22 22 C 1.35839 * 126.10566 * 359.72600 * 21 20 19 23 23 C 1.35285 * 107.61390 * 180.02562 * 22 21 20 24 24 C 1.39959 * 107.96566 * 359.97438 * 23 22 21 25 25 N 1.30817 * 108.37198 * 0.26795 * 24 23 22 26 26 C 1.38911 * 120.74981 * 359.43257 * 20 19 18 27 27 C 1.46935 * 118.73993 * 53.86604 * 13 12 11 28 28 C 1.53045 * 109.46157 * 295.06203 * 10 9 7 29 29 H 0.96997 * 120.00369 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47029 * 59.99619 * 9 7 2 31 31 H 1.09003 * 109.46651 * 300.00170 * 9 7 2 32 32 H 1.08998 * 109.46505 * 55.02818 * 10 9 7 33 33 H 1.09008 * 109.49251 * 61.43484 * 11 10 9 34 34 H 1.08991 * 109.52177 * 301.35324 * 11 10 9 35 35 H 1.09001 * 109.58400 * 185.58056 * 12 11 10 36 36 H 1.08991 * 109.70475 * 65.22321 * 12 11 10 37 37 H 1.07999 * 120.42666 * 0.04245 * 17 16 14 38 38 H 1.08004 * 119.50496 * 180.02562 * 18 17 16 39 39 H 1.07992 * 126.19514 * 0.03589 * 22 21 20 40 40 H 1.08001 * 126.01670 * 180.02562 * 23 22 21 41 41 H 1.08007 * 125.80776 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.53151 * 180.29907 * 26 20 19 43 43 H 1.08996 * 109.58586 * 65.91989 * 27 13 12 44 44 H 1.08997 * 109.58430 * 186.34927 * 27 13 12 45 45 H 1.08998 * 109.49673 * 298.57103 * 28 10 9 46 46 H 1.09003 * 109.49037 * 58.66710 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4841 -4.9837 0.1277 12 6 2.4846 -6.1432 0.1634 13 7 3.3515 -6.0565 -1.0197 14 6 3.4941 -7.1120 -1.8455 15 8 2.8232 -8.1109 -1.6761 16 6 4.4687 -7.0545 -2.9598 17 6 5.7287 -6.4717 -2.7831 18 6 6.6085 -6.4372 -3.8463 19 7 6.2795 -6.9484 -5.0163 20 6 5.0988 -7.5038 -5.2307 21 7 4.7994 -8.0254 -6.4930 22 6 5.6197 -8.0220 -7.5757 23 6 4.9570 -8.6183 -8.5934 24 6 3.6952 -8.9989 -8.1225 25 7 3.5976 -8.6401 -6.8683 26 6 4.1547 -7.5799 -4.2146 27 6 4.0650 -4.7991 -1.2821 28 6 3.0425 -3.6528 -1.3047 29 1 -0.4850 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8896 31 1 0.6242 -2.5566 0.8903 32 1 2.9286 -3.5548 0.8444 33 1 0.8191 -5.1032 -0.7277 34 1 0.8981 -4.9803 1.0466 35 1 1.9461 -7.0909 0.1531 36 1 3.0913 -6.0775 1.0665 37 1 6.0091 -6.0545 -1.8272 38 1 7.5826 -5.9892 -3.7164 39 1 6.6199 -7.6168 -7.6167 40 1 5.3355 -8.7740 -9.5929 41 1 2.9306 -9.4997 -8.6980 42 1 3.1932 -8.0385 -4.3923 43 1 4.7976 -4.6234 -0.4944 44 1 4.5695 -4.8596 -2.2464 45 1 2.3627 -3.7849 -2.1464 46 1 3.5659 -2.7019 -1.4048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565953431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:18 Heat of formation + Delta-G solvation = 86.582026 kcal Electronic energy + Delta-G solvation = -28647.995826 eV Core-core repulsion = 24732.556622 eV Total energy + Delta-G solvation = -3915.439204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.90296 -40.86406 -39.50728 -37.45415 -34.50205 -33.83616 -33.06843 -32.11027 -30.96755 -30.53029 -29.71147 -28.21828 -25.69130 -24.47686 -24.21139 -22.93800 -22.37389 -21.36457 -21.12769 -20.13516 -19.24939 -18.26330 -17.39015 -16.48655 -16.36253 -16.20114 -15.98653 -15.79335 -15.20103 -15.01888 -14.57958 -14.50638 -13.95194 -13.90483 -13.84055 -13.65053 -13.27369 -13.15373 -13.08963 -12.89540 -12.48095 -12.26143 -11.88044 -11.26908 -11.16749 -11.05492 -10.95120 -10.78232 -10.77305 -10.55044 -10.47363 -10.28783 -10.18477 -9.88338 -9.67118 -9.51795 -9.34382 -9.02286 -8.62271 -8.52613 -8.40177 -6.04706 -4.07125 0.19816 0.51686 1.67359 1.75622 2.44590 2.56695 2.85582 3.26318 3.34517 3.36560 3.40080 3.85387 4.05400 4.22728 4.40641 4.48074 4.54937 4.66967 4.73536 5.00962 5.07881 5.19843 5.28063 5.28445 5.32157 5.35558 5.39286 5.44873 5.54992 5.58695 5.64383 5.65996 5.87696 5.93135 5.96261 6.18446 6.25557 6.28946 6.42910 6.55465 6.70337 6.86005 6.90912 7.00608 7.03311 7.31499 7.48782 7.61495 7.75396 7.94583 7.97638 8.36275 8.99544 9.57027 11.06541 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.002489 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.605330 B =11247.183054 C =11995.277411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.130 4.130 12 C 0.112 3.888 13 N -0.593 5.593 14 C 0.557 3.443 15 O -0.532 6.532 16 C -0.051 4.051 17 C -0.157 4.157 18 C 0.133 3.867 19 N -0.496 5.496 20 C 0.369 3.631 21 N -0.327 5.327 22 C 0.080 3.920 23 C -0.266 4.266 24 C 0.064 3.936 25 N -0.281 5.281 26 C -0.114 4.114 27 C 0.092 3.908 28 C -0.119 4.119 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.017 0.983 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.183 0.817 40 H 0.157 0.843 41 H 0.194 0.806 42 H 0.157 0.843 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.027 -16.117 -11.275 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.099 4.099 11 C -0.168 4.168 12 C -0.009 4.009 13 N -0.325 5.325 14 C 0.344 3.656 15 O -0.409 6.409 16 C -0.063 4.063 17 C -0.178 4.178 18 C -0.024 4.024 19 N -0.210 5.210 20 C 0.141 3.859 21 N -0.105 5.105 22 C -0.062 4.062 23 C -0.294 4.294 24 C -0.125 4.125 25 N -0.100 5.100 26 C -0.137 4.137 27 C -0.030 4.030 28 C -0.157 4.157 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.171 0.829 38 H 0.193 0.807 39 H 0.200 0.800 40 H 0.175 0.825 41 H 0.211 0.789 42 H 0.174 0.826 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.386 -16.439 -10.733 23.762 hybrid contribution 0.380 1.104 -0.168 1.179 sum 13.766 -15.335 -10.901 23.313 Atomic orbital electron populations 1.69970 1.06066 1.26490 1.50845 1.25032 0.94803 0.99231 0.95436 0.86593 0.80080 0.84057 0.77596 1.19749 1.21092 1.21060 1.21254 0.92918 0.90910 1.50411 0.92545 1.19128 0.93605 0.90997 0.97276 1.21205 0.98032 0.94699 0.96007 1.22040 0.97610 0.94647 1.02521 1.21766 0.92589 1.00733 0.85841 1.48075 1.46136 1.12435 1.25847 1.18083 0.82354 0.83550 0.81628 1.90792 1.45706 1.31952 1.72474 1.20249 0.95130 0.96801 0.94074 1.22497 0.93591 0.99762 1.01943 1.22499 0.99583 0.94472 0.85891 1.66713 1.16938 1.11402 1.25935 1.17485 0.90514 0.94675 0.83190 1.45782 1.12195 1.45331 1.07169 1.22930 0.97943 0.99278 0.86021 1.21686 0.96088 1.10423 1.01218 1.24209 0.97965 0.98262 0.92020 1.77563 1.01010 1.15894 1.15496 1.21610 1.01369 0.99956 0.90730 1.22426 0.95592 0.83535 1.01493 1.21994 0.97475 0.97001 0.99230 0.93052 0.96631 0.96512 0.92201 0.91937 0.90845 0.89406 0.91269 0.82885 0.80730 0.79963 0.82537 0.78910 0.82578 0.90882 0.89868 0.92210 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -13.66 8.39 -34.44 -0.29 -13.95 16 8 H 0.06 1.43 7.05 -52.49 -0.37 1.06 16 9 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 10 C -0.08 -1.49 2.10 -90.57 -0.19 -1.68 16 11 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 12 C 0.11 1.57 6.44 -3.71 -0.02 1.55 16 13 N -0.59 -8.20 2.97 -173.51 -0.51 -8.71 16 14 C 0.56 8.24 7.37 -12.19 -0.09 8.15 16 15 O -0.53 -9.52 16.38 5.36 0.09 -9.43 16 16 C -0.05 -0.64 5.13 -104.67 -0.54 -1.17 16 17 C -0.16 -1.45 7.49 -39.01 -0.29 -1.74 16 18 C 0.13 1.12 11.17 -17.62 -0.20 0.92 16 19 N -0.50 -5.39 9.83 -12.34 -0.12 -5.51 16 20 C 0.37 4.63 7.55 -154.43 -1.17 3.46 16 21 N -0.33 -4.01 3.81 -12.13 -0.05 -4.06 16 22 C 0.08 0.76 11.10 -16.83 -0.19 0.57 16 23 C -0.27 -2.14 10.80 -39.99 -0.43 -2.57 16 24 C 0.06 0.58 12.02 -17.34 -0.21 0.37 16 25 N -0.28 -3.52 11.83 30.64 0.36 -3.16 16 26 C -0.11 -1.51 9.36 -38.82 -0.36 -1.87 16 27 C 0.09 1.14 4.98 -3.48 -0.02 1.12 16 28 C -0.12 -1.96 5.21 -26.39 -0.14 -2.09 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.15 1.09 6.69 -52.49 -0.35 0.74 16 38 H 0.18 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.18 1.33 8.05 -52.49 -0.42 0.91 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.19 1.03 8.06 -52.48 -0.42 0.60 16 42 H 0.16 2.25 7.69 -52.49 -0.40 1.85 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.91 4.74 -51.93 -0.25 0.66 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.09 1.51 6.91 -51.93 -0.36 1.16 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -33.78 379.06 -9.60 -43.38 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.30 Total: 0.62 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -4.49 Total: -9.19 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.42 Total: -46.98 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.78 -9.60 -43.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565953431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.964 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds