Wall clock time and date at job start Sat Apr 11 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00008 * 2 1 4 4 H 1.48506 * 109.47229 * 240.00207 * 3 2 1 5 5 H 1.48500 * 109.46843 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46987 * 120.00161 * 3 2 1 7 7 C 1.37878 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46248 * 185.00036 * 10 9 7 12 12 C 1.53190 * 109.31657 * 178.62987 * 11 10 9 13 13 N 1.46919 * 108.77587 * 54.63301 * 12 11 10 14 14 C 1.34782 * 120.62999 * 126.36941 * 13 12 11 15 15 O 1.21515 * 120.00056 * 0.27906 * 14 13 12 16 16 C 1.48180 * 120.00346 * 180.28103 * 14 13 12 17 17 C 1.39123 * 119.69556 * 158.55351 * 16 14 13 18 18 C 1.39285 * 118.97200 * 179.97438 * 17 16 14 19 19 N 1.39947 * 120.82145 * 179.97438 * 18 17 16 20 20 C 1.35817 * 126.10331 * 180.02562 * 19 18 17 21 21 C 1.35286 * 107.62042 * 179.97438 * 20 19 18 22 22 C 1.39954 * 107.96254 * 0.02562 * 21 20 19 23 23 N 1.30823 * 108.36719 * 359.97438 * 22 21 20 24 24 C 1.39278 * 118.35923 * 0.24812 * 18 17 16 25 25 C 1.38348 * 119.27149 * 359.50459 * 24 18 17 26 26 N 1.31585 * 120.97957 * 0.51480 * 25 24 18 27 27 C 1.46921 * 118.74301 * 306.64892 * 13 12 11 28 28 C 1.52767 * 109.01010 * 53.30192 * 27 13 12 29 29 H 0.96996 * 120.00319 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47109 * 60.00491 * 9 7 2 31 31 H 1.09001 * 109.46921 * 300.00397 * 9 7 2 32 32 H 1.09001 * 109.46182 * 304.97368 * 10 9 7 33 33 H 1.09006 * 109.49764 * 58.67328 * 11 10 9 34 34 H 1.09004 * 109.52657 * 298.60213 * 11 10 9 35 35 H 1.09002 * 109.58491 * 294.84783 * 12 11 10 36 36 H 1.09008 * 109.70639 * 174.49311 * 12 11 10 37 37 H 1.07995 * 120.51157 * 359.95467 * 17 16 14 38 38 H 1.08001 * 126.18994 * 359.97438 * 20 19 18 39 39 H 1.07995 * 126.01945 * 180.02562 * 21 20 19 40 40 H 1.08009 * 125.81259 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.36334 * 179.72458 * 24 18 17 42 42 H 1.08000 * 119.50688 * 180.22657 * 25 24 18 43 43 H 1.08993 * 109.59304 * 173.14264 * 27 13 12 44 44 H 1.09010 * 109.58238 * 293.56763 * 27 13 12 45 45 H 1.08992 * 109.56186 * 185.55428 * 28 27 13 46 46 H 1.08995 * 109.35336 * 65.50417 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4841 -4.9837 -0.1263 12 6 2.4845 -6.1434 -0.1604 13 7 3.3503 -6.0560 1.0233 14 6 3.4912 -7.1109 1.8504 15 8 2.9032 -8.1484 1.6174 16 6 4.3632 -7.0054 3.0438 17 6 4.1785 -7.8779 4.1116 18 6 5.0070 -7.7657 5.2257 19 7 4.8549 -8.6227 6.3215 20 6 5.5989 -8.6086 7.4577 21 6 5.1344 -9.5910 8.2636 22 6 4.0762 -10.2263 7.6037 23 7 3.9080 -9.6481 6.4423 24 6 5.9867 -6.7758 5.2245 25 6 6.1118 -5.9491 4.1222 26 7 5.3139 -6.0793 3.0840 27 6 4.0547 -4.7949 1.2919 28 6 3.0410 -3.6521 1.3067 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5568 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 2.9290 -3.5552 -0.8427 33 1 0.8992 -4.9806 -1.0461 34 1 0.8177 -5.1031 0.7280 35 1 3.0918 -6.0756 -1.0631 36 1 1.9478 -7.0922 -0.1514 37 1 3.4045 -8.6302 4.0774 38 1 6.4138 -7.9350 7.6781 39 1 5.5133 -9.8410 9.2435 40 1 3.4967 -11.0527 7.9882 41 1 6.6439 -6.6571 6.0733 42 1 6.8726 -5.1826 4.1157 43 1 4.5518 -4.8530 2.2601 44 1 4.7927 -4.6150 0.5101 45 1 3.5644 -2.7013 1.4069 46 1 2.3605 -3.7838 2.1479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572042416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:26 Heat of formation + Delta-G solvation = 93.921194 kcal Electronic energy + Delta-G solvation = -28633.691688 eV Core-core repulsion = 24718.570734 eV Total energy + Delta-G solvation = -3915.120954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.04987 -40.88986 -39.28861 -37.32441 -34.97872 -33.90181 -32.30027 -31.89306 -31.02158 -30.45414 -30.14705 -28.08014 -25.61168 -24.55205 -24.08877 -22.73261 -22.37167 -21.37918 -21.21487 -20.15371 -19.17617 -18.24722 -17.35348 -16.46370 -16.28122 -16.20311 -15.92967 -15.65926 -15.21888 -15.20106 -14.56811 -14.48405 -14.10212 -13.93023 -13.86483 -13.55034 -13.29692 -13.12620 -12.87736 -12.72807 -12.43837 -12.18264 -11.78064 -11.35487 -11.24757 -11.14942 -10.96837 -10.73469 -10.67341 -10.52605 -10.31124 -10.10258 -9.80776 -9.77917 -9.67710 -9.38572 -9.05556 -8.94822 -8.76563 -8.34512 -8.29662 -5.98072 -3.99907 0.09895 0.45383 1.64164 1.76520 2.29811 2.62752 2.97041 3.32698 3.37763 3.39384 3.47962 3.86907 3.89228 4.11054 4.37534 4.41085 4.46308 4.60508 4.66724 4.95461 5.09343 5.13925 5.30806 5.34671 5.37385 5.42691 5.49378 5.54736 5.57270 5.68041 5.78324 5.86678 6.02988 6.08545 6.11054 6.39437 6.41656 6.46539 6.53893 6.60672 6.76366 7.02171 7.05375 7.09000 7.17031 7.30505 7.56293 7.69164 7.84638 8.01976 8.16065 8.44684 9.06451 9.63501 11.13220 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.002388 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.990408 B =11723.156646 C =12541.723281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.129 4.129 12 C 0.109 3.891 13 N -0.578 5.578 14 C 0.566 3.434 15 O -0.540 6.540 16 C 0.117 3.883 17 C -0.118 4.118 18 C 0.203 3.797 19 N -0.331 5.331 20 C 0.054 3.946 21 C -0.254 4.254 22 C 0.061 3.939 23 N -0.280 5.280 24 C -0.181 4.181 25 C 0.124 3.876 26 N -0.452 5.452 27 C 0.072 3.928 28 C -0.120 4.120 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.158 0.842 40 H 0.193 0.807 41 H 0.147 0.853 42 H 0.176 0.824 43 H 0.133 0.867 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.737 -17.553 15.363 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.101 4.101 11 C -0.167 4.167 12 C -0.012 4.012 13 N -0.308 5.308 14 C 0.351 3.649 15 O -0.418 6.418 16 C -0.020 4.020 17 C -0.141 4.141 18 C 0.102 3.898 19 N -0.107 5.107 20 C -0.086 4.086 21 C -0.282 4.282 22 C -0.128 4.128 23 N -0.098 5.098 24 C -0.204 4.204 25 C -0.034 4.034 26 N -0.165 5.165 27 C -0.049 4.049 28 C -0.158 4.158 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.178 0.822 38 H 0.199 0.801 39 H 0.176 0.824 40 H 0.210 0.790 41 H 0.164 0.836 42 H 0.193 0.807 43 H 0.149 0.851 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.672 -17.373 13.359 25.830 hybrid contribution 0.806 0.575 1.597 1.879 sum 14.478 -16.798 14.956 26.748 Atomic orbital electron populations 1.69953 1.06049 1.26602 1.50944 1.25029 0.94803 0.99164 0.95537 0.86704 0.79598 0.83406 0.78548 1.20286 1.21411 1.20307 1.21207 0.92899 0.90949 1.50278 0.92628 1.19121 0.93618 0.91072 0.97107 1.21215 0.97999 0.94480 0.96404 1.22025 0.97544 0.94833 1.02284 1.21779 0.92666 1.00460 0.86338 1.48043 1.45231 1.12862 1.24648 1.17753 0.81200 0.84009 0.81902 1.90780 1.48252 1.29125 1.73653 1.21157 0.94523 0.91784 0.94576 1.21760 1.00391 1.00730 0.91189 1.17642 0.95915 0.90012 0.86215 1.45962 1.26319 1.25829 1.12626 1.22834 0.98281 1.00902 0.86619 1.21690 1.02333 1.00981 1.03233 1.24219 0.97387 0.99639 0.91554 1.77585 1.10580 1.01064 1.20543 1.21999 0.99574 0.96692 1.02152 1.22886 0.96019 0.96955 0.87548 1.67786 1.04319 1.17529 1.26884 1.22938 0.94838 0.81871 1.05274 1.21858 0.97728 0.97660 0.98552 0.93026 0.96650 0.96735 0.92333 0.91009 0.92106 0.91388 0.89577 0.82200 0.80126 0.82441 0.78978 0.83554 0.80652 0.85070 0.91689 0.89785 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.10 8.39 -34.44 -0.29 -14.39 16 8 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 9 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 10 C -0.08 -1.64 2.10 -90.58 -0.19 -1.83 16 11 C -0.13 -2.25 5.36 -26.61 -0.14 -2.39 16 12 C 0.11 1.72 6.43 -3.72 -0.02 1.69 16 13 N -0.58 -9.25 2.98 -174.02 -0.52 -9.77 16 14 C 0.57 9.28 7.62 -12.17 -0.09 9.19 16 15 O -0.54 -10.11 15.93 5.35 0.09 -10.02 16 16 C 0.12 1.61 6.46 -83.04 -0.54 1.08 16 17 C -0.12 -1.53 9.25 -38.86 -0.36 -1.89 16 18 C 0.20 2.14 6.73 -83.38 -0.56 1.58 16 19 N -0.33 -3.37 3.81 -10.41 -0.04 -3.41 16 20 C 0.05 0.37 10.86 -16.84 -0.18 0.19 16 21 C -0.25 -1.60 10.80 -39.99 -0.43 -2.03 16 22 C 0.06 0.48 12.02 -17.34 -0.21 0.27 16 23 N -0.28 -3.19 11.97 30.64 0.37 -2.82 16 24 C -0.18 -1.35 9.54 -39.15 -0.37 -1.72 16 25 C 0.12 1.01 11.17 -17.62 -0.20 0.82 16 26 N -0.45 -5.33 6.35 -9.87 -0.06 -5.39 16 27 C 0.07 1.10 5.96 -3.93 -0.02 1.08 16 28 C -0.12 -2.18 5.17 -26.83 -0.14 -2.32 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.36 7.00 -51.92 -0.36 1.00 16 37 H 0.16 2.28 7.53 -52.49 -0.40 1.89 16 38 H 0.18 0.54 7.13 -52.49 -0.37 0.16 16 39 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.19 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.15 0.54 6.88 -52.49 -0.36 0.18 16 42 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 1.85 3.97 -79.62 -0.32 1.53 16 44 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 45 H 0.08 1.61 6.91 -51.93 -0.36 1.25 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -34.84 377.06 -9.07 -43.91 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.33 Total: 0.18 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.97 Total: -8.62 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.48 Total: -47.48 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.84 -9.07 -43.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572042416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.835 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds