Wall clock time and date at job start Sat Apr 11 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36929 * 119.99710 * 342.59309 * 7 2 1 10 10 C 1.46932 * 120.62923 * 152.28799 * 9 7 2 11 11 C 1.53193 * 108.89365 * 126.33970 * 10 9 7 12 12 C 1.53349 * 109.14947 * 54.58000 * 11 10 9 13 13 C 1.52995 * 109.42091 * 178.67009 * 12 11 10 14 14 N 1.46498 * 109.47509 * 295.12909 * 13 12 11 15 15 C 1.34773 * 120.00110 * 179.97438 * 14 13 12 16 16 O 1.21484 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.48383 * 119.99899 * 180.02562 * 15 14 13 18 18 C 1.40209 * 119.21978 * 180.02562 * 17 15 14 19 19 C 1.36638 * 119.90809 * 179.97438 * 18 17 15 20 20 C 1.40549 * 118.10864 * 359.97438 * 19 18 17 21 21 C 1.40408 * 122.06484 * 180.02562 * 20 19 18 22 22 N 1.31248 * 119.87104 * 179.97438 * 21 20 19 23 23 C 1.32598 * 122.69037 * 359.96287 * 22 21 20 24 24 C 1.36103 * 121.98747 * 0.04102 * 23 22 21 25 25 C 1.40944 * 118.77032 * 359.97438 * 24 23 22 26 26 N 1.31972 * 119.21924 * 359.72546 * 17 15 14 27 27 C 1.53038 * 109.60966 * 298.71388 * 12 11 10 28 28 C 1.46927 * 120.63500 * 332.30825 * 9 7 2 29 29 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.58789 * 246.20114 * 10 9 7 31 31 H 1.09000 * 109.58152 * 6.48462 * 10 9 7 32 32 H 1.08996 * 109.49449 * 174.66041 * 11 10 9 33 33 H 1.08996 * 109.49932 * 294.75815 * 11 10 9 34 34 H 1.09005 * 109.42157 * 58.74728 * 12 11 10 35 35 H 1.09002 * 109.46902 * 55.13125 * 13 12 11 36 36 H 1.09003 * 109.46943 * 175.12782 * 13 12 11 37 37 H 0.96998 * 119.99866 * 0.02562 * 14 13 12 38 38 H 1.08008 * 120.04571 * 359.97438 * 18 17 15 39 39 H 1.08006 * 120.94585 * 180.02562 * 19 18 17 40 40 H 1.08001 * 120.06385 * 359.97438 * 21 20 19 41 41 H 1.07994 * 119.00534 * 180.02562 * 23 22 21 42 42 H 1.08004 * 120.61199 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.49898 * 301.42152 * 27 12 11 44 44 H 1.09001 * 109.50239 * 181.32239 * 27 12 11 45 45 H 1.08997 * 109.58712 * 353.38030 * 28 9 7 46 46 H 1.09003 * 109.58223 * 113.65521 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3724 -2.3611 0.3537 10 6 1.8185 -3.6547 -0.1814 11 6 2.0771 -4.6120 0.9864 12 6 0.8196 -4.6900 1.8607 13 6 1.0597 -5.6701 3.0107 14 7 1.2451 -7.0196 2.4716 15 6 1.4729 -8.0532 3.3060 16 8 1.5240 -7.8659 4.5052 17 6 1.6613 -9.4200 2.7599 18 6 1.8967 -10.4834 3.6429 19 6 2.0717 -11.7478 3.1553 20 6 2.0070 -11.9358 1.7639 21 6 2.1741 -13.1988 1.1738 22 7 2.1047 -13.3252 -0.1307 23 6 1.8791 -12.2984 -0.9387 24 6 1.7037 -11.0341 -0.4662 25 6 1.7641 -10.8153 0.9248 26 7 1.5972 -9.6068 1.4551 27 6 0.5025 -3.3049 2.4290 28 6 0.2288 -2.3345 1.2757 29 1 -0.4849 0.8401 0.0004 30 1 1.0455 -4.0685 -0.8288 31 1 2.7374 -3.5171 -0.7513 32 1 2.3168 -5.6021 0.5989 33 1 2.9115 -4.2421 1.5822 34 1 -0.0201 -5.0361 1.2579 35 1 1.9524 -5.3729 3.5611 36 1 0.2000 -5.6615 3.6808 37 1 1.2047 -7.1691 1.5141 38 1 1.9398 -10.3033 4.7069 39 1 2.2536 -12.5792 3.8202 40 1 2.3593 -14.0647 1.7922 41 1 1.8334 -12.4704 -2.0039 42 1 1.5208 -10.2139 -1.1446 43 1 1.3517 -2.9474 3.0114 44 1 -0.3777 -3.3669 3.0689 45 1 0.1000 -1.3262 1.6692 46 1 -0.6744 -2.6382 0.7463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573573192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:29 Heat of formation + Delta-G solvation = 46.365419 kcal Electronic energy + Delta-G solvation = -28226.233126 eV Core-core repulsion = 24309.049999 eV Total energy + Delta-G solvation = -3917.183127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73840 -39.95675 -38.30607 -37.68181 -35.12058 -34.18430 -32.94315 -32.09788 -30.93845 -30.74170 -29.72451 -27.35873 -25.83754 -24.69286 -23.85951 -23.16750 -22.28422 -21.34377 -20.86559 -19.29407 -19.02373 -18.39476 -17.71981 -16.75391 -16.41833 -15.93557 -15.75809 -15.27039 -14.98622 -14.86778 -14.77556 -14.51287 -14.03496 -13.77747 -13.62791 -13.50992 -13.40314 -13.21930 -12.97845 -12.73313 -12.37700 -12.33742 -11.89465 -11.34480 -11.23820 -11.00653 -10.72368 -10.67484 -10.51185 -10.31207 -10.23682 -10.21280 -9.95515 -9.85472 -9.80725 -9.55787 -9.44750 -9.08011 -9.02005 -8.46492 -6.67094 -5.78946 -3.20393 -0.44698 0.06274 1.31979 2.05317 2.85672 2.95946 3.37245 3.44735 3.47341 3.52374 3.61690 3.83163 3.97618 4.15533 4.21328 4.36995 4.50092 4.67714 4.81058 5.06667 5.09172 5.16359 5.20157 5.25136 5.37349 5.39429 5.41264 5.52352 5.59768 5.81647 5.83452 5.89043 6.02622 6.08144 6.11544 6.31783 6.33950 6.46090 6.59423 6.67294 6.75711 6.80900 6.97867 7.03668 7.36226 7.38749 7.43792 7.65929 7.79879 7.98463 8.45377 9.21797 9.85568 10.42151 11.29684 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002102 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.392686 B =13320.323234 C =14301.569262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.146 3.854 11 C -0.128 4.128 12 C -0.090 4.090 13 C 0.120 3.880 14 N -0.698 5.698 15 C 0.562 3.438 16 O -0.530 6.530 17 C 0.144 3.856 18 C -0.131 4.131 19 C -0.037 4.037 20 C -0.155 4.155 21 C 0.159 3.841 22 N -0.483 5.483 23 C 0.088 3.912 24 C -0.133 4.133 25 C 0.153 3.847 26 N -0.446 5.446 27 C -0.132 4.132 28 C 0.171 3.829 29 H 0.253 0.747 30 H 0.016 0.984 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.412 0.588 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.152 0.848 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 -26.586 4.516 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.167 4.167 12 C -0.109 4.109 13 C -0.003 4.003 14 N -0.349 5.349 15 C 0.345 3.655 16 O -0.406 6.406 17 C -0.012 4.012 18 C -0.152 4.152 19 C -0.065 4.065 20 C -0.160 4.160 21 C -0.015 4.015 22 N -0.191 5.191 23 C -0.055 4.055 24 C -0.153 4.153 25 C 0.025 3.975 26 N -0.158 5.158 27 C -0.172 4.172 28 C 0.045 3.955 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.249 0.751 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.186 0.814 41 H 0.180 0.820 42 H 0.169 0.831 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.397 -26.318 4.178 26.755 hybrid contribution 0.400 0.960 0.396 1.113 sum 2.797 -25.358 4.575 25.919 Atomic orbital electron populations 1.70035 1.05257 1.25453 1.54020 1.25031 0.95279 0.98404 1.01038 0.86303 0.79246 0.83778 0.77597 1.21495 1.21555 1.20455 1.19177 0.92688 0.84910 1.41291 0.91767 1.44056 1.35953 1.01367 1.50149 1.20878 0.97518 0.86985 0.92716 1.22136 0.96899 0.98854 0.98848 1.21376 0.98911 0.95370 0.95262 1.21723 1.01847 0.79637 0.97081 1.45998 1.69905 1.07746 1.11230 1.17890 0.77956 0.83480 0.86199 1.90796 1.51165 1.84265 1.14404 1.21658 0.95110 0.95139 0.89251 1.21846 0.98825 0.91989 1.02510 1.21466 0.93820 0.97777 0.93464 1.19963 1.03934 0.96493 0.95560 1.23268 0.92200 0.94943 0.91089 1.67503 1.11766 1.34593 1.05217 1.22317 0.95177 0.87712 1.00336 1.21859 1.00654 0.99489 0.93291 1.18885 0.96143 0.88094 0.94405 1.67886 1.11893 1.23342 1.12670 1.22173 1.00381 0.94490 1.00149 1.20769 0.88614 0.98280 0.87816 0.93667 0.96577 0.92915 0.93324 0.92159 0.91181 0.91145 0.91327 0.75135 0.82596 0.82848 0.81366 0.81995 0.83075 0.92329 0.93000 0.89355 0.96421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 8 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.62 3.00 -172.31 -0.52 -15.14 16 10 C 0.15 2.97 6.50 -3.71 -0.02 2.95 16 11 C -0.13 -2.12 5.27 -26.45 -0.14 -2.26 16 12 C -0.09 -1.41 2.19 -90.42 -0.20 -1.61 16 13 C 0.12 1.67 5.06 -4.05 -0.02 1.65 16 14 N -0.70 -8.99 5.26 -61.08 -0.32 -9.31 16 15 C 0.56 7.49 7.82 -12.08 -0.09 7.40 16 16 O -0.53 -8.34 16.28 5.38 0.09 -8.25 16 17 C 0.14 1.63 6.75 -82.89 -0.56 1.07 16 18 C -0.13 -1.15 9.54 -39.42 -0.38 -1.52 16 19 C -0.04 -0.24 9.92 -39.29 -0.39 -0.63 16 20 C -0.16 -1.25 5.75 -106.74 -0.61 -1.87 16 21 C 0.16 1.08 11.05 -16.98 -0.19 0.89 16 22 N -0.48 -4.06 10.30 -13.18 -0.14 -4.20 16 23 C 0.09 0.66 11.06 -17.99 -0.20 0.46 16 24 C -0.13 -1.11 10.08 -39.32 -0.40 -1.50 16 25 C 0.15 1.53 6.63 -84.86 -0.56 0.96 16 26 N -0.45 -5.01 9.50 -7.49 -0.07 -5.08 16 27 C -0.13 -2.41 5.36 -26.61 -0.14 -2.55 16 28 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 32 H 0.05 0.69 7.16 -51.93 -0.37 0.32 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.41 4.95 6.95 -40.82 -0.28 4.67 16 38 H 0.16 1.22 7.60 -52.48 -0.40 0.82 16 39 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 40 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -32.77 378.47 -10.22 -42.99 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.40 Total: 1.79 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -4.15 Total: 0.35 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.42 Total: -59.19 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.77 -10.22 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573573192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.351 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds