Wall clock time and date at job start Sat Apr 11 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36929 * 119.99710 * 342.59309 * 7 2 1 10 10 C 1.46932 * 120.62923 * 152.28799 * 9 7 2 11 11 C 1.53193 * 108.89365 * 126.33970 * 10 9 7 12 12 C 1.53349 * 109.14947 * 54.58000 * 11 10 9 13 13 C 1.52995 * 109.42091 * 178.67009 * 12 11 10 14 14 N 1.46498 * 109.47509 * 295.12909 * 13 12 11 15 15 C 1.34773 * 120.00110 * 179.97438 * 14 13 12 16 16 O 1.21484 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.48383 * 119.99899 * 180.02562 * 15 14 13 18 18 C 1.40209 * 119.21978 * 180.02562 * 17 15 14 19 19 C 1.36638 * 119.90809 * 179.97438 * 18 17 15 20 20 C 1.40549 * 118.10864 * 359.97438 * 19 18 17 21 21 C 1.40408 * 122.06484 * 180.02562 * 20 19 18 22 22 N 1.31248 * 119.87104 * 179.97438 * 21 20 19 23 23 C 1.32598 * 122.69037 * 359.96287 * 22 21 20 24 24 C 1.36103 * 121.98747 * 0.04102 * 23 22 21 25 25 C 1.40944 * 118.77032 * 359.97438 * 24 23 22 26 26 N 1.31972 * 119.21924 * 359.72546 * 17 15 14 27 27 C 1.53038 * 109.60966 * 298.71388 * 12 11 10 28 28 C 1.46927 * 120.63500 * 332.30825 * 9 7 2 29 29 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.58789 * 246.20114 * 10 9 7 31 31 H 1.09000 * 109.58152 * 6.48462 * 10 9 7 32 32 H 1.08996 * 109.49449 * 174.66041 * 11 10 9 33 33 H 1.08996 * 109.49932 * 294.75815 * 11 10 9 34 34 H 1.09005 * 109.42157 * 58.74728 * 12 11 10 35 35 H 1.09002 * 109.46902 * 55.13125 * 13 12 11 36 36 H 1.09003 * 109.46943 * 175.12782 * 13 12 11 37 37 H 0.96998 * 119.99866 * 0.02562 * 14 13 12 38 38 H 1.08008 * 120.04571 * 359.97438 * 18 17 15 39 39 H 1.08006 * 120.94585 * 180.02562 * 19 18 17 40 40 H 1.08001 * 120.06385 * 359.97438 * 21 20 19 41 41 H 1.07994 * 119.00534 * 180.02562 * 23 22 21 42 42 H 1.08004 * 120.61199 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.49898 * 301.42152 * 27 12 11 44 44 H 1.09001 * 109.50239 * 181.32239 * 27 12 11 45 45 H 1.08997 * 109.58712 * 353.38030 * 28 9 7 46 46 H 1.09003 * 109.58223 * 113.65521 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3724 -2.3611 0.3537 10 6 1.8185 -3.6547 -0.1814 11 6 2.0771 -4.6120 0.9864 12 6 0.8196 -4.6900 1.8607 13 6 1.0597 -5.6701 3.0107 14 7 1.2451 -7.0196 2.4716 15 6 1.4729 -8.0532 3.3060 16 8 1.5240 -7.8659 4.5052 17 6 1.6613 -9.4200 2.7599 18 6 1.8967 -10.4834 3.6429 19 6 2.0717 -11.7478 3.1553 20 6 2.0070 -11.9358 1.7639 21 6 2.1741 -13.1988 1.1738 22 7 2.1047 -13.3252 -0.1307 23 6 1.8791 -12.2984 -0.9387 24 6 1.7037 -11.0341 -0.4662 25 6 1.7641 -10.8153 0.9248 26 7 1.5972 -9.6068 1.4551 27 6 0.5025 -3.3049 2.4290 28 6 0.2288 -2.3345 1.2757 29 1 -0.4849 0.8401 0.0004 30 1 1.0455 -4.0685 -0.8288 31 1 2.7374 -3.5171 -0.7513 32 1 2.3168 -5.6021 0.5989 33 1 2.9115 -4.2421 1.5822 34 1 -0.0201 -5.0361 1.2579 35 1 1.9524 -5.3729 3.5611 36 1 0.2000 -5.6615 3.6808 37 1 1.2047 -7.1691 1.5141 38 1 1.9398 -10.3033 4.7069 39 1 2.2536 -12.5792 3.8202 40 1 2.3593 -14.0647 1.7922 41 1 1.8334 -12.4704 -2.0039 42 1 1.5208 -10.2139 -1.1446 43 1 1.3517 -2.9474 3.0114 44 1 -0.3777 -3.3669 3.0689 45 1 0.1000 -1.3262 1.6692 46 1 -0.6744 -2.6382 0.7463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573573192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:29 Heat of formation + Delta-G solvation = 25.200920 kcal Electronic energy + Delta-G solvation = -28227.150887 eV Core-core repulsion = 24309.049999 eV Total energy + Delta-G solvation = -3918.100888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.37951 -40.92126 -39.47393 -38.73639 -36.51474 -34.91410 -34.41948 -32.98088 -32.36026 -31.50477 -31.38733 -28.73288 -26.91491 -25.65202 -25.11686 -23.88534 -23.71961 -22.78895 -21.95826 -20.78648 -19.76552 -19.31050 -18.63278 -18.31642 -17.17751 -16.97355 -16.81987 -16.67041 -15.85087 -15.83934 -15.68665 -15.40508 -15.33387 -15.31389 -15.00208 -14.76935 -14.36355 -14.08738 -13.99087 -13.87115 -13.78569 -13.39849 -13.32401 -13.01235 -12.83607 -12.56878 -12.27651 -12.02997 -11.86022 -11.80669 -11.68569 -11.59168 -11.21140 -11.12517 -10.93373 -10.55858 -10.52779 -10.51472 -10.14558 -9.58778 -8.67977 -7.87811 -5.31995 -1.07889 -0.54724 0.72777 1.29428 1.45331 1.47298 1.57173 1.91027 2.18174 2.51061 2.77575 2.97902 3.26644 3.36207 3.44690 3.55599 3.60473 3.69758 3.77238 3.81617 3.90744 4.03088 4.07018 4.27862 4.48360 4.52300 4.53551 4.65102 4.66346 4.71047 4.76422 4.77626 4.85160 4.92378 4.94212 4.99891 5.11397 5.24740 5.26904 5.27940 5.29824 5.40912 5.53726 5.54465 5.65536 5.78405 6.21993 6.39493 6.52752 6.85051 6.98088 7.15402 7.87510 8.38426 9.18553 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002102 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.392686 B =13320.323234 C =14301.569262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.141 3.859 11 C -0.114 4.114 12 C -0.079 4.079 13 C 0.133 3.867 14 N -0.695 5.695 15 C 0.562 3.438 16 O -0.559 6.559 17 C 0.125 3.875 18 C -0.146 4.146 19 C -0.011 4.011 20 C -0.165 4.165 21 C 0.170 3.830 22 N -0.505 5.505 23 C 0.091 3.909 24 C -0.150 4.150 25 C 0.130 3.870 26 N -0.466 5.466 27 C -0.120 4.120 28 C 0.176 3.824 29 H 0.250 0.750 30 H 0.016 0.984 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.417 0.583 38 H 0.163 0.837 39 H 0.201 0.799 40 H 0.209 0.791 41 H 0.184 0.816 42 H 0.156 0.844 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.053 0.947 46 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -29.591 5.178 30.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.015 3.985 11 C -0.153 4.153 12 C -0.098 4.098 13 C 0.009 3.991 14 N -0.346 5.346 15 C 0.347 3.653 16 O -0.437 6.437 17 C -0.029 4.029 18 C -0.166 4.166 19 C -0.039 4.039 20 C -0.169 4.169 21 C -0.004 4.004 22 N -0.213 5.213 23 C -0.052 4.052 24 C -0.170 4.170 25 C 0.002 3.998 26 N -0.178 5.178 27 C -0.160 4.160 28 C 0.051 3.949 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.180 0.820 39 H 0.218 0.782 40 H 0.225 0.775 41 H 0.201 0.799 42 H 0.174 0.826 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 3.454 -29.347 4.824 29.941 hybrid contribution 0.080 1.759 0.109 1.765 sum 3.534 -27.588 4.933 28.247 Atomic orbital electron populations 1.70184 1.06604 1.25797 1.55478 1.25775 0.96054 1.01444 1.01460 0.85298 0.78194 0.79778 0.77400 1.21263 1.21803 1.19592 1.19495 0.92920 0.86222 1.40555 0.91814 1.44338 1.36065 1.02203 1.50933 1.21041 0.97170 0.86028 0.94230 1.21971 0.96970 0.99099 0.97281 1.21204 0.98598 0.94299 0.95674 1.21445 1.01810 0.79798 0.96013 1.45914 1.69895 1.07310 1.11494 1.18213 0.77001 0.84309 0.85800 1.90770 1.52488 1.84908 1.15518 1.21473 0.96938 0.94545 0.89935 1.21971 0.99827 0.92338 1.02511 1.21946 0.90595 0.98049 0.93263 1.20232 1.03928 0.96516 0.96251 1.23908 0.89998 0.95511 0.90937 1.67598 1.12733 1.34871 1.06093 1.22677 0.93823 0.87232 1.01438 1.21982 1.01832 1.00184 0.93015 1.19246 0.96745 0.88447 0.95408 1.67780 1.12855 1.24447 1.12714 1.21966 1.01124 0.94650 0.98263 1.20590 0.87733 0.97697 0.88928 0.94118 0.96614 0.93110 0.90422 0.92856 0.90787 0.91613 0.90955 0.74587 0.81980 0.78227 0.77489 0.79895 0.82645 0.92808 0.90950 0.92856 0.98428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 11.19 21.65 0.24 -55.39 16 2 C -0.05 -2.94 4.91 84.87 0.42 -2.52 16 3 Si 0.97 45.28 29.59 68.60 2.03 47.31 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.26 -14.54 9.58 84.04 0.81 -13.73 16 8 H 0.06 3.47 7.89 -2.91 -0.02 3.44 16 9 N -0.61 -30.77 3.00 -699.08 -2.09 -32.86 16 10 C 0.14 5.74 6.50 86.36 0.56 6.30 16 11 C -0.11 -3.65 5.27 30.78 0.16 -3.49 16 12 C -0.08 -2.39 2.19 -10.67 -0.02 -2.42 16 13 C 0.13 3.55 5.06 86.38 0.44 3.99 16 14 N -0.70 -17.26 5.26 -465.47 -2.45 -19.70 16 15 C 0.56 14.66 7.82 86.95 0.68 15.34 16 16 O -0.56 -17.31 16.28 -3.66 -0.06 -17.37 16 17 C 0.13 2.73 6.75 42.31 0.29 3.01 16 18 C -0.15 -2.28 9.54 22.37 0.21 -2.07 16 19 C -0.01 -0.10 9.92 22.46 0.22 0.12 16 20 C -0.17 -2.22 5.75 -21.24 -0.12 -2.34 16 21 C 0.17 1.72 11.05 85.31 0.94 2.66 16 22 N -0.51 -7.20 10.30 -195.61 -2.02 -9.21 16 23 C 0.09 1.21 11.06 84.08 0.93 2.14 16 24 C -0.15 -2.36 10.08 22.44 0.23 -2.14 16 25 C 0.13 2.44 6.63 40.58 0.27 2.71 16 26 N -0.47 -10.14 9.50 -177.61 -1.69 -11.83 16 27 C -0.12 -4.37 5.36 30.67 0.16 -4.21 16 28 C 0.18 8.45 5.31 86.36 0.46 8.91 16 29 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 32 H 0.08 2.06 7.16 -2.39 -0.02 2.04 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.42 9.57 6.95 -92.71 -0.64 8.93 16 38 H 0.16 2.27 7.60 -2.91 -0.02 2.24 16 39 H 0.20 -0.07 8.06 -2.91 -0.02 -0.09 16 40 H 0.21 0.29 8.06 -2.91 -0.02 0.27 16 41 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 2.92 6.04 -2.39 -0.01 2.90 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -73.32 378.47 0.96 -72.36 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.36 Total: 14.42 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.63 Total: 12.27 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -8.00 Total: -129.00 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.06 Total: -17.37 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.32 0.96 -72.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573573192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.564 kcal (2) G-P(sol) polarization free energy of solvation -73.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds