Wall clock time and date at job start Sat Apr 11 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00794 * 2 1 4 4 C 1.38220 * 120.01498 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.98848 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47408 * 90.00162 * 5 4 3 7 7 N 1.46900 * 109.47517 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99938 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46813 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.46877 * 304.99466 * 9 8 7 11 11 O 1.42893 * 109.47047 * 65.00032 * 9 8 7 12 12 C 1.53002 * 109.46809 * 184.99542 * 9 8 7 13 13 N 1.46894 * 109.47052 * 179.97438 * 12 9 8 14 14 C 1.46896 * 111.00206 * 293.95766 * 13 12 9 15 15 C 1.46904 * 111.00152 * 170.00270 * 13 12 9 16 16 C 1.50700 * 109.47117 * 190.00530 * 15 13 12 17 17 H 1.08007 * 120.00317 * 359.97438 * 16 15 13 18 18 C 1.37870 * 119.99950 * 179.97438 * 16 15 13 19 19 N 1.31514 * 120.00203 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46706 * 60.00001 * 20 18 16 22 22 H 1.48502 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47034 * 300.00094 * 20 18 16 24 24 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 25 25 C 1.38189 * 120.01199 * 359.97438 * 24 4 3 26 26 C 1.38335 * 120.00426 * 179.97438 * 2 1 3 27 27 Cl 1.73595 * 120.01468 * 359.74809 * 26 2 1 28 28 H 1.08997 * 109.47389 * 270.01704 * 1 2 3 29 29 H 1.09002 * 109.47291 * 30.02179 * 1 2 3 30 30 H 1.09002 * 109.47234 * 150.01696 * 1 2 3 31 31 H 1.08002 * 119.99411 * 359.95836 * 3 2 1 32 32 H 1.08998 * 109.47388 * 210.00495 * 5 4 3 33 33 H 1.09001 * 109.47195 * 330.00365 * 5 4 3 34 34 H 1.08998 * 109.47117 * 300.00498 * 6 5 4 35 35 H 1.09001 * 109.46777 * 59.99947 * 6 5 4 36 36 H 1.00896 * 110.99822 * 56.04879 * 7 6 5 37 37 H 1.09003 * 109.47207 * 299.99622 * 8 7 6 38 38 H 1.08994 * 109.47753 * 59.99808 * 8 7 6 39 39 H 0.96696 * 114.00568 * 59.99931 * 11 9 8 40 40 H 1.09006 * 109.47443 * 300.00037 * 12 9 8 41 41 H 1.09003 * 109.47179 * 59.99762 * 12 9 8 42 42 H 1.08998 * 109.47628 * 59.99874 * 14 13 12 43 43 H 1.09002 * 109.47314 * 179.97438 * 14 13 12 44 44 H 1.09001 * 109.47293 * 299.99694 * 14 13 12 45 45 H 1.09002 * 109.46726 * 310.00069 * 15 13 12 46 46 H 1.08993 * 109.47067 * 69.99900 * 15 13 12 47 47 H 0.97000 * 120.00315 * 179.97438 * 19 18 16 48 48 H 1.07997 * 119.99869 * 179.97438 * 24 4 3 49 49 H 1.08001 * 120.00973 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3335 2.5025 0.0011 6 6 4.5879 2.9439 1.4438 7 7 5.3214 4.2167 1.4443 8 6 5.5845 4.6720 2.8160 9 6 6.3477 5.9975 2.7757 10 1 7.2504 5.8789 2.1766 11 8 5.5194 7.0066 2.1947 12 6 6.7305 6.4090 4.1988 13 7 7.4638 7.6812 4.1602 14 6 8.7573 7.5230 3.4822 15 6 7.6414 8.2278 5.5121 16 6 8.1720 9.6353 5.4192 17 1 8.3590 10.0792 4.4526 18 6 8.4187 10.3562 6.5682 19 7 8.1905 9.8158 7.7453 20 14 9.0771 12.1006 6.4532 21 1 8.1146 12.9442 5.7000 22 1 9.2565 12.6531 7.8199 23 1 10.3840 12.0909 5.7482 24 6 4.2725 0.0002 0.0005 25 6 3.5825 -1.1971 0.0005 26 6 2.1987 -1.1980 0.0005 27 17 1.3313 -2.7016 0.0078 28 1 -0.3634 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6583 2.1324 -0.0007 32 1 5.2861 2.3726 -0.5124 33 1 3.7444 3.2621 -0.5127 34 1 3.6353 3.0738 1.9573 35 1 5.1770 2.1843 1.9576 36 1 4.8251 4.9203 0.9184 37 1 4.6390 4.8134 3.3396 38 1 6.1811 3.9246 3.3389 39 1 4.6965 7.1657 2.6769 40 1 5.8277 6.5276 4.7981 41 1 7.3623 5.6392 4.6421 42 1 8.5925 7.1834 2.4596 43 1 9.2791 8.4799 3.4672 44 1 9.3600 6.7884 4.0163 45 1 6.6824 8.2345 6.0301 46 1 8.3483 7.6087 6.0643 47 1 8.3645 10.3229 8.5538 48 1 5.3525 0.0008 0.0005 49 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576392963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:41 Heat of formation + Delta-G solvation = -43.931868 kcal Electronic energy + Delta-G solvation = -25837.935354 eV Core-core repulsion = 22017.944137 eV Total energy + Delta-G solvation = -3819.991217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.166 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.10236 -38.39194 -37.07052 -36.29032 -35.27237 -33.63471 -32.57932 -32.46606 -30.13626 -28.32716 -27.37161 -26.98289 -25.67204 -23.79971 -22.84742 -22.46886 -21.37465 -20.69970 -20.14080 -17.29877 -16.77229 -16.49300 -16.19467 -15.96215 -15.65569 -15.08877 -14.93420 -14.63588 -14.56653 -14.30641 -13.97215 -13.73074 -13.61881 -13.57976 -13.13853 -12.98906 -12.80974 -12.62970 -12.48103 -12.12655 -11.98050 -11.88697 -11.58412 -11.46534 -11.33962 -11.29780 -11.10981 -11.09118 -10.86625 -10.74503 -10.65034 -10.28021 -10.00763 -9.62390 -9.29856 -9.13195 -8.90812 -8.60561 -8.42433 -7.18460 -6.01770 -4.02844 0.68383 0.82974 1.72692 3.11743 3.34997 3.38445 3.42077 3.83535 4.23277 4.31346 4.41844 4.50648 4.65787 4.71981 4.77887 4.86953 4.91725 4.96123 5.10281 5.15678 5.17538 5.20582 5.30303 5.32151 5.35708 5.38831 5.49670 5.57519 5.65519 5.68225 5.74622 5.75813 5.77729 5.90936 6.07708 6.14700 6.22525 6.33552 6.37505 6.41921 6.79772 6.80335 7.23104 7.28066 7.34006 7.80949 7.96081 8.11173 8.21866 8.56665 9.04980 9.61348 11.09131 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.032178 B = 0.001379 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.954902 B =20302.821763 C =20371.637202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.107 4.107 4 C -0.068 4.068 5 C -0.081 4.081 6 C 0.065 3.935 7 N -0.686 5.686 8 C 0.029 3.971 9 C 0.114 3.886 10 H 0.103 0.897 11 O -0.546 6.546 12 C 0.025 3.975 13 N -0.529 5.529 14 C 0.037 3.963 15 C 0.192 3.808 16 C -0.506 4.506 17 H 0.064 0.936 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.109 4.109 25 C -0.104 4.104 26 C -0.043 4.043 27 Cl -0.072 7.072 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.348 0.652 37 H 0.032 0.968 38 H 0.078 0.922 39 H 0.367 0.633 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.008 0.992 45 H 0.027 0.973 46 H -0.011 1.011 47 H 0.261 0.739 48 H 0.133 0.867 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.094 -24.042 -16.990 32.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.125 4.125 4 C -0.069 4.069 5 C -0.118 4.118 6 C -0.064 4.064 7 N -0.318 5.318 8 C -0.101 4.101 9 C 0.054 3.946 10 H 0.121 0.879 11 O -0.350 6.350 12 C -0.105 4.105 13 N -0.253 5.253 14 C -0.112 4.112 15 C 0.067 3.933 16 C -0.545 4.545 17 H 0.082 0.918 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.070 4.070 27 Cl -0.044 7.044 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.167 0.833 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.213 0.787 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.026 0.974 45 H 0.046 0.954 46 H 0.007 0.993 47 H 0.071 0.929 48 H 0.151 0.849 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.333 -24.064 -17.550 32.632 hybrid contribution -0.507 0.304 1.423 1.541 sum -13.841 -23.760 -16.126 31.877 Atomic orbital electron populations 1.20885 0.90273 1.03513 1.03039 1.19773 0.96765 0.91383 0.99516 1.20933 0.93557 0.97185 1.00820 1.19968 0.93587 0.95374 0.97936 1.20603 1.00562 0.93221 0.97462 1.21911 0.96366 0.92612 0.95560 1.60373 1.51657 1.05505 1.14249 1.22689 0.99440 0.98489 0.89531 1.21981 0.93629 0.84472 0.94536 0.87882 1.86593 1.35112 1.58852 1.54422 1.22704 0.99291 0.92776 0.95753 1.62016 1.18621 1.22170 1.22496 1.22247 0.90891 1.01182 0.96870 1.19741 0.96235 0.94692 0.82592 1.21138 1.42461 0.98156 0.92707 0.91829 1.24993 0.95904 0.98499 0.95270 1.69950 1.49238 1.37510 0.97351 0.86542 0.79444 0.84428 0.76886 1.20133 1.21404 1.20279 1.21052 1.00358 0.91079 1.00251 1.21049 0.91900 0.99250 1.00069 1.20817 0.92455 0.86648 1.07075 1.98359 1.76958 1.32101 1.96934 0.90578 0.90990 0.90818 0.85143 0.89622 0.90685 0.95248 0.90939 0.83316 0.94960 0.90369 0.78686 0.91378 0.95323 0.93356 0.90744 0.97358 0.95443 0.99318 0.92920 0.84900 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.61 36.00 0.35 -0.35 16 2 C -0.07 -0.55 5.88 -104.59 -0.62 -1.17 16 3 C -0.11 -0.77 9.36 -39.59 -0.37 -1.14 16 4 C -0.07 -0.50 5.13 -104.62 -0.54 -1.03 16 5 C -0.08 -0.56 5.60 -27.89 -0.16 -0.72 16 6 C 0.06 0.54 5.67 -3.83 -0.02 0.52 16 7 N -0.69 -6.86 6.50 -113.78 -0.74 -7.60 16 8 C 0.03 0.32 5.36 -3.82 -0.02 0.30 16 9 C 0.11 1.59 3.08 -26.73 -0.08 1.51 16 10 H 0.10 1.56 6.55 -51.93 -0.34 1.22 16 11 O -0.55 -8.05 12.72 -35.23 -0.45 -8.50 16 12 C 0.02 0.42 4.62 -3.83 -0.02 0.40 16 13 N -0.53 -11.44 4.62 -244.37 -1.13 -12.57 16 14 C 0.04 0.73 9.14 60.06 0.55 1.28 16 15 C 0.19 5.05 4.72 -4.97 -0.02 5.03 16 16 C -0.51 -14.38 8.46 -34.44 -0.29 -14.67 16 17 H 0.06 1.80 7.12 -52.48 -0.37 1.42 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 20 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 C -0.11 -0.77 9.70 -39.59 -0.38 -1.16 16 25 C -0.10 -0.76 9.83 -39.55 -0.39 -1.15 16 26 C -0.04 -0.34 6.31 -39.49 -0.25 -0.59 16 27 Cl -0.07 -0.54 27.30 -51.86 -1.42 -1.96 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.07 0.42 6.91 -51.93 -0.36 0.06 16 31 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.35 3.43 8.29 -39.29 -0.33 3.10 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.37 4.40 9.05 45.56 0.41 4.81 16 40 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 41 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.05 0.85 6.47 -51.93 -0.34 0.51 16 43 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 44 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 46 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 49 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 412.07 15.07 6.21 6.21 Total: -1.00 -31.31 412.07 -11.71 -43.01 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.54 Total: 2.25 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.36 Total: -11.48 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -1.13 Total: -46.31 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.45 Total: -8.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.42 Total: -1.96 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.31 -11.71 -43.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576392963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.918 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds