Wall clock time and date at job start Sat Apr 11 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00521 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00167 * 3 2 1 7 7 C 1.37873 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99759 * 90.00349 * 10 9 7 12 12 C 1.50695 * 109.47390 * 89.99689 * 11 10 9 13 13 C 1.38230 * 119.61869 * 94.73140 * 12 11 10 14 14 C 1.38623 * 119.16087 * 179.76023 * 13 12 11 15 15 C 1.38675 * 118.42581 * 0.49673 * 14 13 12 16 16 C 1.38186 * 119.15536 * 359.73929 * 15 14 13 17 17 N 1.31852 * 119.62015 * 274.99866 * 12 11 10 18 18 C 1.34771 * 120.00084 * 270.00021 * 10 9 7 19 19 O 1.21283 * 120.00062 * 180.02562 * 18 10 9 20 20 C 1.50700 * 120.00216 * 0.02562 * 18 10 9 21 21 N 1.46500 * 109.47348 * 179.97438 * 20 18 10 22 22 C 1.34946 * 126.03500 * 124.99776 * 21 20 18 23 23 C 1.35318 * 107.74561 * 179.97438 * 22 21 20 24 24 C 1.50703 * 126.04357 * 180.02562 * 23 22 21 25 25 C 1.52998 * 117.49864 * 188.62326 * 24 23 22 26 26 C 1.53000 * 117.49884 * 119.99819 * 24 23 22 27 27 C 1.39873 * 107.92059 * 0.02562 * 23 22 21 28 28 N 1.30839 * 108.20071 * 359.74098 * 27 23 22 29 29 H 0.97001 * 119.99269 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 31 31 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 32 32 H 1.09001 * 109.47057 * 210.00204 * 11 10 9 33 33 H 1.08999 * 109.47333 * 329.99764 * 11 10 9 34 34 H 1.08000 * 120.41930 * 359.97120 * 13 12 11 35 35 H 1.08005 * 120.79251 * 180.25849 * 14 13 12 36 36 H 1.07998 * 120.42720 * 179.71309 * 15 14 13 37 37 H 1.08003 * 119.61150 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.47357 * 300.00116 * 20 18 10 39 39 H 1.08998 * 109.46869 * 60.00030 * 20 18 10 40 40 H 1.08001 * 126.13085 * 359.95956 * 22 21 20 41 41 H 1.08998 * 115.54464 * 334.33084 * 24 23 22 42 42 H 1.08991 * 117.50015 * 359.97438 * 25 24 23 43 43 H 1.09001 * 117.49768 * 145.02390 * 25 24 23 44 44 H 1.09001 * 117.49780 * 214.98179 * 26 24 23 45 45 H 1.08998 * 117.49771 * 359.97438 * 26 24 23 46 46 H 1.07997 * 125.89919 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2435 -3.2662 -1.2697 12 6 5.6665 -3.0295 -1.7053 13 6 6.6420 -3.9550 -1.3849 14 6 7.9470 -3.7303 -1.7947 15 6 8.2256 -2.5727 -2.5057 16 6 7.1991 -1.6907 -2.7849 17 7 5.9678 -1.9394 -2.3831 18 6 4.2248 -3.2105 1.1662 19 8 4.6295 -4.3538 1.1663 20 6 3.9737 -2.5000 2.4713 21 7 4.2909 -3.3975 3.5849 22 6 5.1471 -3.1374 4.5950 23 6 5.1586 -4.2147 5.4137 24 6 5.9742 -4.3634 6.6722 25 6 5.9945 -5.7386 7.3425 26 6 5.2167 -4.5870 7.9826 27 6 4.2798 -5.1661 4.8854 28 7 3.7552 -4.6752 3.7920 29 1 -0.4849 0.8401 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 4.0765 -4.3354 -1.1391 33 1 3.5624 -2.8822 -2.0291 34 1 6.3899 -4.8437 -0.8253 35 1 8.7292 -4.4380 -1.5624 36 1 9.2320 -2.3630 -2.8368 37 1 7.4079 -0.7867 -3.3378 38 1 4.6036 -1.6123 2.5288 39 1 2.9256 -2.2062 2.5292 40 1 5.7206 -2.2317 4.7264 41 1 6.8871 -3.7694 6.7136 42 1 5.4177 -6.5357 6.8735 43 1 6.9211 -6.0496 7.8250 44 1 5.6315 -4.1403 8.8862 45 1 4.1285 -4.6261 7.9345 46 1 4.0672 -6.1363 5.3096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597147472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:15 Heat of formation + Delta-G solvation = 118.153322 kcal Electronic energy + Delta-G solvation = -28940.084710 eV Core-core repulsion = 25026.014540 eV Total energy + Delta-G solvation = -3914.070170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08777 -40.18813 -38.97808 -36.99479 -35.33460 -33.14211 -32.62628 -32.31749 -31.55398 -29.91237 -28.32823 -27.70537 -25.68734 -23.43061 -22.80949 -22.61003 -22.42587 -22.11757 -20.84522 -19.78389 -18.46207 -17.23666 -16.97708 -16.66593 -16.60772 -15.89878 -15.68951 -15.42116 -15.33743 -14.91701 -14.43021 -14.12172 -14.00146 -13.84144 -13.49231 -13.22288 -13.00232 -12.94363 -12.61875 -12.39012 -12.14665 -12.05071 -11.86721 -11.59199 -11.55683 -11.52588 -11.05115 -10.80732 -10.72975 -10.44845 -10.34672 -10.15052 -9.82701 -9.72663 -9.59927 -9.32465 -9.08244 -8.85183 -8.75619 -8.00336 -7.95348 -6.26202 -4.29395 1.15381 1.37414 2.13233 2.66811 2.94008 3.06474 3.15351 3.21675 3.24689 3.56746 4.01425 4.08088 4.22362 4.44682 4.58070 4.85580 4.89885 4.90693 4.94140 4.99185 5.01793 5.07387 5.09489 5.13736 5.25442 5.33177 5.42036 5.59303 5.64307 5.70501 5.72242 5.84491 5.86919 5.89457 6.08332 6.12483 6.16053 6.22396 6.26307 6.31075 6.34152 6.58825 6.79106 6.86729 7.08592 7.22938 7.36944 7.91910 8.00550 8.15313 8.31029 8.65585 8.80838 9.32068 10.86064 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007817 B = 0.003945 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3581.031289 B = 7095.193526 C = 9658.935223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.871 3.129 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.207 3.793 10 N -0.580 5.580 11 C 0.170 3.830 12 C 0.118 3.882 13 C -0.150 4.150 14 C -0.082 4.082 15 C -0.180 4.180 16 C 0.093 3.907 17 N -0.468 5.468 18 C 0.510 3.490 19 O -0.538 6.538 20 C 0.116 3.884 21 N -0.350 5.350 22 C 0.057 3.943 23 C -0.214 4.214 24 C -0.067 4.067 25 C -0.178 4.178 26 C -0.178 4.178 27 C 0.037 3.963 28 N -0.256 5.256 29 H 0.267 0.733 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.169 0.831 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.075 -4.971 6.002 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.698 3.302 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.086 3.914 10 N -0.311 5.311 11 C 0.046 3.954 12 C -0.021 4.021 13 C -0.170 4.170 14 C -0.108 4.108 15 C -0.200 4.200 16 C -0.064 4.064 17 N -0.177 5.177 18 C 0.296 3.704 19 O -0.416 6.416 20 C -0.008 4.008 21 N -0.131 5.131 22 C -0.089 4.089 23 C -0.226 4.226 24 C -0.086 4.086 25 C -0.215 4.215 26 C -0.216 4.216 27 C -0.150 4.150 28 N -0.076 5.076 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.170 0.830 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.186 0.814 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 14.569 -4.934 4.685 16.080 hybrid contribution 1.654 0.754 0.734 1.960 sum 16.223 -4.180 5.419 17.608 Atomic orbital electron populations 1.69894 1.06226 1.27293 1.48972 1.24857 0.94700 0.98852 0.94069 0.86932 0.80170 0.83975 0.79156 1.19643 1.20904 1.19058 1.21362 0.88818 0.95197 1.53111 0.90122 1.19928 0.95980 0.77441 0.98088 1.47803 1.63596 1.16119 1.03575 1.20169 0.89890 0.98687 0.86688 1.21869 0.97440 0.89679 0.93091 1.22152 0.93372 1.01386 1.00117 1.21570 0.96704 0.96849 0.95718 1.22102 1.00720 0.96017 1.01130 1.22763 0.88093 0.98727 0.96830 1.67576 1.21287 1.19178 1.09664 1.20260 0.78000 0.86754 0.85368 1.90673 1.46448 1.17287 1.87160 1.21660 1.06083 0.90215 0.82869 1.48110 1.32946 1.13172 1.18853 1.22146 0.96323 1.00313 0.90107 1.19157 1.07181 0.95774 1.00439 1.20112 0.99054 0.99805 0.89657 1.22936 1.02340 0.92063 1.04144 1.23009 0.99432 1.02962 0.96165 1.23647 0.97327 1.00002 0.93981 1.77543 1.20561 0.92294 1.17249 0.92260 0.95471 0.93796 0.88864 0.88040 0.84366 0.85205 0.85211 0.82996 0.86422 0.85067 0.81356 0.87695 0.88741 0.88961 0.89057 0.88790 0.80817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.96 55.43 0.77 -24.57 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 19.48 27.47 -169.99 -4.67 14.81 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.54 6.54 56.52 0.37 -5.17 16 7 C -0.55 -13.95 9.83 -34.44 -0.34 -14.29 16 8 H 0.08 2.32 8.06 -52.48 -0.42 1.89 16 9 C 0.21 4.42 4.03 -5.19 -0.02 4.39 16 10 N -0.58 -11.47 2.44 -176.43 -0.43 -11.90 16 11 C 0.17 3.08 5.71 -5.20 -0.03 3.05 16 12 C 0.12 1.97 6.36 -82.59 -0.53 1.45 16 13 C -0.15 -2.23 9.72 -39.44 -0.38 -2.61 16 14 C -0.08 -1.01 10.18 -39.28 -0.40 -1.40 16 15 C -0.18 -2.04 10.11 -39.44 -0.40 -2.44 16 16 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 17 N -0.47 -7.80 10.27 -9.47 -0.10 -7.90 16 18 C 0.51 10.09 7.70 -10.99 -0.08 10.00 16 19 O -0.54 -11.59 15.23 5.55 0.08 -11.51 16 20 C 0.12 2.03 5.54 -5.19 -0.03 2.00 16 21 N -0.35 -6.06 3.39 -62.55 -0.21 -6.27 16 22 C 0.06 0.82 11.36 -17.22 -0.20 0.62 16 23 C -0.21 -2.93 5.76 -105.05 -0.61 -3.54 16 24 C -0.07 -0.71 6.25 -91.77 -0.57 -1.29 16 25 C -0.18 -1.63 10.02 -26.73 -0.27 -1.90 16 26 C -0.18 -1.67 10.23 -26.73 -0.27 -1.94 16 27 C 0.04 0.57 11.35 -17.36 -0.20 0.38 16 28 N -0.26 -4.84 11.66 30.62 0.36 -4.48 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.55 5.50 -51.93 -0.29 0.27 16 31 H 0.04 0.97 7.50 -51.93 -0.39 0.58 16 32 H 0.09 1.65 7.32 -51.93 -0.38 1.27 16 33 H 0.10 1.89 8.07 -51.93 -0.42 1.47 16 34 H 0.14 2.09 7.99 -52.49 -0.42 1.67 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.15 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.12 1.71 7.33 -51.93 -0.38 1.33 16 39 H 0.13 2.46 8.00 -51.93 -0.42 2.05 16 40 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.09 0.87 6.97 -51.93 -0.36 0.51 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.17 2.17 7.19 -52.49 -0.38 1.79 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -32.59 393.05 -9.29 -41.88 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.40 Total: 8.51 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -4.62 Total: -4.48 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.39 Total: -55.13 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.67 Total: 14.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.59 -9.29 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597147472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.030 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds