Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00521 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00167 * 3 2 1 7 7 C 1.37873 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99759 * 90.00349 * 10 9 7 12 12 C 1.50695 * 109.47390 * 89.99689 * 11 10 9 13 13 C 1.38230 * 119.61869 * 94.73140 * 12 11 10 14 14 C 1.38623 * 119.16087 * 179.76023 * 13 12 11 15 15 C 1.38675 * 118.42581 * 0.49673 * 14 13 12 16 16 C 1.38186 * 119.15536 * 359.73929 * 15 14 13 17 17 N 1.31852 * 119.62015 * 274.99866 * 12 11 10 18 18 C 1.34771 * 120.00084 * 270.00021 * 10 9 7 19 19 O 1.21283 * 120.00062 * 180.02562 * 18 10 9 20 20 C 1.50700 * 120.00216 * 0.02562 * 18 10 9 21 21 N 1.46500 * 109.47348 * 179.97438 * 20 18 10 22 22 C 1.34946 * 126.03500 * 124.99776 * 21 20 18 23 23 C 1.35318 * 107.74561 * 179.97438 * 22 21 20 24 24 C 1.50703 * 126.04357 * 180.02562 * 23 22 21 25 25 C 1.52998 * 117.49864 * 188.62326 * 24 23 22 26 26 C 1.53000 * 117.49884 * 119.99819 * 24 23 22 27 27 C 1.39873 * 107.92059 * 0.02562 * 23 22 21 28 28 N 1.30839 * 108.20071 * 359.74098 * 27 23 22 29 29 H 0.97001 * 119.99269 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 31 31 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 32 32 H 1.09001 * 109.47057 * 210.00204 * 11 10 9 33 33 H 1.08999 * 109.47333 * 329.99764 * 11 10 9 34 34 H 1.08000 * 120.41930 * 359.97120 * 13 12 11 35 35 H 1.08005 * 120.79251 * 180.25849 * 14 13 12 36 36 H 1.07998 * 120.42720 * 179.71309 * 15 14 13 37 37 H 1.08003 * 119.61150 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.47357 * 300.00116 * 20 18 10 39 39 H 1.08998 * 109.46869 * 60.00030 * 20 18 10 40 40 H 1.08001 * 126.13085 * 359.95956 * 22 21 20 41 41 H 1.08998 * 115.54464 * 334.33084 * 24 23 22 42 42 H 1.08991 * 117.50015 * 359.97438 * 25 24 23 43 43 H 1.09001 * 117.49768 * 145.02390 * 25 24 23 44 44 H 1.09001 * 117.49780 * 214.98179 * 26 24 23 45 45 H 1.08998 * 117.49771 * 359.97438 * 26 24 23 46 46 H 1.07997 * 125.89919 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2435 -3.2662 -1.2697 12 6 5.6665 -3.0295 -1.7053 13 6 6.6420 -3.9550 -1.3849 14 6 7.9470 -3.7303 -1.7947 15 6 8.2256 -2.5727 -2.5057 16 6 7.1991 -1.6907 -2.7849 17 7 5.9678 -1.9394 -2.3831 18 6 4.2248 -3.2105 1.1662 19 8 4.6295 -4.3538 1.1663 20 6 3.9737 -2.5000 2.4713 21 7 4.2909 -3.3975 3.5849 22 6 5.1471 -3.1374 4.5950 23 6 5.1586 -4.2147 5.4137 24 6 5.9742 -4.3634 6.6722 25 6 5.9945 -5.7386 7.3425 26 6 5.2167 -4.5870 7.9826 27 6 4.2798 -5.1661 4.8854 28 7 3.7552 -4.6752 3.7920 29 1 -0.4849 0.8401 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 4.0765 -4.3354 -1.1391 33 1 3.5624 -2.8822 -2.0291 34 1 6.3899 -4.8437 -0.8253 35 1 8.7292 -4.4380 -1.5624 36 1 9.2320 -2.3630 -2.8368 37 1 7.4079 -0.7867 -3.3378 38 1 4.6036 -1.6123 2.5288 39 1 2.9256 -2.2062 2.5292 40 1 5.7206 -2.2317 4.7264 41 1 6.8871 -3.7694 6.7136 42 1 5.4177 -6.5357 6.8735 43 1 6.9211 -6.0496 7.8250 44 1 5.6315 -4.1403 8.8862 45 1 4.1285 -4.6261 7.9345 46 1 4.0672 -6.1363 5.3096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597147472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = 98.998969 kcal Electronic energy + Delta-G solvation = -28940.915305 eV Core-core repulsion = 25026.014540 eV Total energy + Delta-G solvation = -3914.900765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.28422 -41.37721 -40.38455 -37.82501 -36.95064 -34.77053 -34.19161 -33.40726 -32.82975 -31.05384 -30.00974 -29.09210 -27.02118 -24.66905 -24.25345 -23.75954 -23.40234 -23.06030 -22.03992 -20.92762 -19.86414 -19.16376 -18.38137 -17.96503 -17.70157 -17.11338 -17.00023 -16.65556 -16.31804 -16.19635 -16.08581 -15.34267 -15.28142 -14.92947 -14.68587 -14.66157 -14.32190 -14.10411 -14.05563 -13.77388 -13.63789 -13.33985 -13.20691 -12.84181 -12.82250 -12.64716 -12.47362 -12.24900 -12.01693 -11.74741 -11.70716 -11.36163 -11.15051 -11.07116 -10.83658 -10.80381 -10.46308 -10.34205 -9.98253 -9.57445 -9.09461 -8.31372 -6.40202 0.08828 0.35649 0.96922 1.38999 1.42074 1.43671 1.50299 1.52741 1.84279 2.17547 2.33292 2.93093 3.02518 3.22995 3.28766 3.44471 3.62944 3.77820 3.90359 4.00776 4.01091 4.14339 4.15216 4.22805 4.24828 4.29369 4.31890 4.42948 4.54472 4.55915 4.63579 4.73049 4.78525 4.83135 4.85106 4.91204 5.09576 5.18367 5.20890 5.25431 5.38934 5.39658 5.43571 5.49276 5.73282 5.78254 6.06385 6.12804 6.47189 6.66074 6.81466 7.06793 7.09647 7.26859 8.84887 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007817 B = 0.003945 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3581.031289 B = 7095.193526 C = 9658.935223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.022 3.978 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.232 1.232 7 C -0.545 4.545 8 H 0.030 0.970 9 C 0.221 3.779 10 N -0.583 5.583 11 C 0.170 3.830 12 C 0.098 3.902 13 C -0.161 4.161 14 C -0.078 4.078 15 C -0.161 4.161 16 C 0.084 3.916 17 N -0.501 5.501 18 C 0.505 3.495 19 O -0.560 6.560 20 C 0.121 3.879 21 N -0.365 5.365 22 C 0.054 3.946 23 C -0.212 4.212 24 C -0.079 4.079 25 C -0.173 4.173 26 C -0.172 4.172 27 C 0.036 3.964 28 N -0.319 5.319 29 H 0.269 0.731 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.206 0.794 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.602 -3.412 7.105 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.177 4.177 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.155 1.155 7 C -0.583 4.583 8 H 0.048 0.952 9 C 0.099 3.901 10 N -0.314 5.314 11 C 0.047 3.953 12 C -0.040 4.040 13 C -0.182 4.182 14 C -0.104 4.104 15 C -0.180 4.180 16 C -0.073 4.073 17 N -0.211 5.211 18 C 0.293 3.707 19 O -0.439 6.439 20 C -0.003 4.003 21 N -0.147 5.147 22 C -0.091 4.091 23 C -0.224 4.224 24 C -0.098 4.098 25 C -0.210 4.210 26 C -0.209 4.209 27 C -0.151 4.151 28 N -0.139 5.139 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.179 0.821 36 H 0.191 0.809 37 H 0.198 0.802 38 H 0.170 0.830 39 H 0.128 0.872 40 H 0.223 0.777 41 H 0.141 0.859 42 H 0.108 0.892 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.100 0.900 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 19.117 -3.407 5.802 20.266 hybrid contribution 0.261 0.124 0.374 0.472 sum 19.378 -3.284 6.176 20.602 Atomic orbital electron populations 1.70061 1.08462 1.28450 1.51007 1.25774 0.95408 1.03050 0.93462 0.85825 0.79992 0.78393 0.79512 1.19391 1.20878 1.15524 1.21482 0.91118 0.93296 1.52393 0.95210 1.19676 0.92880 0.78610 0.98910 1.47828 1.63473 1.15705 1.04367 1.20091 0.91617 0.97874 0.85762 1.21434 0.96424 0.91053 0.95064 1.22091 0.94603 1.00734 1.00763 1.21954 0.95961 0.97774 0.94730 1.22538 1.02123 0.94444 0.98930 1.23339 0.87366 1.00107 0.96529 1.67482 1.23545 1.19462 1.10637 1.20710 0.77386 0.86621 0.86032 1.90647 1.47492 1.18206 1.87525 1.21583 1.05567 0.91195 0.82004 1.48090 1.34166 1.12913 1.19554 1.22851 0.95537 1.01742 0.88931 1.19544 1.06613 0.94877 1.01324 1.20217 0.99540 1.01441 0.88652 1.23036 1.03034 0.91427 1.03489 1.23038 0.98837 1.02920 0.96150 1.24112 0.96915 1.00930 0.93104 1.77471 1.23015 0.93929 1.19502 0.92200 0.93129 0.93664 0.89726 0.89739 0.85679 0.82066 0.80945 0.80238 0.83006 0.87180 0.77686 0.85933 0.89186 0.87099 0.87158 0.89956 0.78978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.03 13.96 21.45 0.30 -55.73 16 2 C 0.02 1.21 5.47 84.65 0.46 1.67 16 3 Si 0.94 39.71 27.47 68.60 1.88 41.59 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.23 -8.50 6.54 99.48 0.65 -7.85 16 7 C -0.54 -29.03 9.83 25.60 0.25 -28.78 16 8 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 9 C 0.22 9.50 4.03 85.63 0.35 9.84 16 10 N -0.58 -23.93 2.44 -830.51 -2.03 -25.95 16 11 C 0.17 6.57 5.71 85.63 0.49 7.06 16 12 C 0.10 3.31 6.36 42.55 0.27 3.58 16 13 C -0.16 -4.74 9.72 22.36 0.22 -4.52 16 14 C -0.08 -1.68 10.18 22.47 0.23 -1.45 16 15 C -0.16 -2.99 10.11 22.36 0.23 -2.76 16 16 C 0.08 1.98 11.18 84.67 0.95 2.93 16 17 N -0.50 -16.29 10.27 -183.88 -1.89 -18.18 16 18 C 0.51 20.66 7.70 87.66 0.68 21.34 16 19 O -0.56 -25.17 15.23 -3.04 -0.05 -25.21 16 20 C 0.12 4.28 5.54 85.63 0.47 4.75 16 21 N -0.37 -12.72 3.39 -351.80 -1.19 -13.91 16 22 C 0.05 1.46 11.36 83.54 0.95 2.41 16 23 C -0.21 -5.53 5.76 -20.14 -0.12 -5.65 16 24 C -0.08 -1.48 6.25 -11.54 -0.07 -1.55 16 25 C -0.17 -2.75 10.02 30.60 0.31 -2.44 16 26 C -0.17 -2.80 10.23 30.60 0.31 -2.49 16 27 C 0.04 1.10 11.35 85.24 0.97 2.07 16 28 N -0.32 -12.43 11.66 -57.02 -0.66 -13.10 16 29 H 0.27 14.96 8.31 -92.71 -0.77 14.18 16 30 H 0.05 1.96 5.50 -2.38 -0.01 1.94 16 31 H 0.05 1.96 7.50 -2.39 -0.02 1.94 16 32 H 0.08 3.30 7.32 -2.39 -0.02 3.28 16 33 H 0.08 3.43 8.07 -2.39 -0.02 3.41 16 34 H 0.13 3.92 7.99 -2.91 -0.02 3.90 16 35 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.15 4.13 7.33 -2.39 -0.02 4.11 16 39 H 0.11 4.33 8.00 -2.39 -0.02 4.31 16 40 H 0.21 3.72 8.06 -2.91 -0.02 3.69 16 41 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 1.50 6.97 -2.39 -0.02 1.49 16 43 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.19 4.81 7.19 -2.91 -0.02 4.79 16 Total: -1.00 -76.19 393.05 4.23 -71.95 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.93 Total: 32.53 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 6.94 Total: 6.01 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -5.47 Total: -126.88 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.88 Total: 41.59 kcal Total: -76.19 4.23 -71.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597147472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.954 kcal (2) G-P(sol) polarization free energy of solvation -76.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds