Wall clock time and date at job start Sat Apr 11 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38511 * 119.85215 * 2 1 4 4 C 1.38094 * 120.38888 * 179.97438 * 3 2 1 5 5 C 1.38723 * 120.07341 * 359.76943 * 4 3 2 6 6 N 1.39799 * 120.14844 * 180.25207 * 5 4 3 7 7 C 1.36374 * 127.11491 * 125.38928 * 6 5 4 8 8 N 1.30502 * 107.19052 * 179.83840 * 7 6 5 9 9 N 1.28530 * 109.92916 * 0.43400 * 8 7 6 10 10 C 1.30505 * 109.92144 * 359.72656 * 9 8 7 11 11 C 1.40166 * 119.69718 * 0.52641 * 5 4 3 12 12 C 1.47613 * 120.18678 * 179.71945 * 11 5 4 13 13 O 1.21584 * 120.00475 * 309.92107 * 12 11 5 14 14 N 1.34783 * 119.99768 * 129.91297 * 12 11 5 15 15 C 1.46923 * 120.62855 * 354.77573 * 14 12 11 16 16 C 1.53197 * 108.89023 * 233.55276 * 15 14 12 17 17 C 1.53070 * 109.29375 * 305.57990 * 16 15 14 18 18 C 1.53036 * 109.66275 * 61.15190 * 17 16 15 19 19 H 1.09006 * 109.49386 * 58.64939 * 18 17 16 20 20 C 1.50701 * 109.49958 * 178.74636 * 18 17 16 21 21 H 1.07998 * 119.99915 * 359.84028 * 20 18 17 22 22 C 1.37878 * 119.99656 * 179.83911 * 20 18 17 23 23 N 1.31514 * 120.00499 * 0.02562 * 22 20 18 24 24 Si 1.86804 * 119.99545 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47144 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47048 * 119.99848 * 24 22 20 27 27 H 1.48504 * 109.46729 * 239.99851 * 24 22 20 28 28 C 1.46928 * 120.62996 * 174.78914 * 14 12 11 29 29 C 1.37858 * 119.84967 * 180.02562 * 2 1 3 30 30 H 1.09010 * 109.46770 * 269.97440 * 1 2 3 31 31 H 1.08997 * 109.46944 * 29.97051 * 1 2 3 32 32 H 1.08997 * 109.47623 * 149.97826 * 1 2 3 33 33 H 1.08001 * 119.80625 * 0.02562 * 3 2 1 34 34 H 1.07996 * 119.96554 * 180.02562 * 4 3 2 35 35 H 1.07997 * 126.40753 * 359.97119 * 7 6 5 36 36 H 1.08000 * 126.40553 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.58929 * 353.41009 * 15 14 12 38 38 H 1.09003 * 109.58877 * 113.69665 * 15 14 12 39 39 H 1.09004 * 109.49285 * 65.38893 * 16 15 14 40 40 H 1.08999 * 109.49747 * 185.47914 * 16 15 14 41 41 H 1.08996 * 109.34810 * 301.12270 * 17 16 15 42 42 H 1.09007 * 109.43861 * 181.23981 * 17 16 15 43 43 H 0.96996 * 120.00074 * 179.97438 * 23 22 20 44 44 H 1.09002 * 109.58386 * 246.15876 * 28 14 12 45 45 H 1.08994 * 109.58762 * 6.58729 * 28 14 12 46 46 H 1.07998 * 120.03945 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2013 0.0000 4 6 3.5773 1.2143 0.0005 5 6 4.2837 0.0204 0.0059 6 7 5.6816 0.0316 0.0118 7 6 6.5058 -0.5897 0.9031 8 7 7.7322 -0.3259 0.5431 9 7 7.7306 0.4220 -0.5022 10 6 6.5032 0.6710 -0.8691 11 6 3.5894 -1.1973 -0.0004 12 6 4.3302 -2.4741 -0.0010 13 8 5.2230 -2.6586 -0.8054 14 7 4.0169 -3.4353 0.8903 15 6 3.0205 -3.1860 1.9408 16 6 3.6404 -3.5196 3.3015 17 6 4.1834 -4.9505 3.2728 18 6 5.2702 -5.0674 2.2017 19 1 6.0711 -4.3601 2.4175 20 6 5.8236 -6.4691 2.1976 21 1 5.4407 -7.2029 2.8913 22 6 6.8188 -6.8147 1.3080 23 7 7.2854 -5.9210 0.4635 24 14 7.5042 -8.5524 1.3024 25 1 6.8161 -9.3593 2.3418 26 1 7.2818 -9.1679 -0.0306 27 1 8.9602 -8.5110 1.5918 28 6 4.6656 -4.7523 0.8299 29 6 2.1931 -1.1957 -0.0005 30 1 -0.3633 -0.0005 1.0278 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5141 33 1 1.6509 2.1334 0.0004 34 1 4.1079 2.1549 0.0009 35 1 6.2008 -1.1899 1.7475 36 1 6.1956 1.2709 -1.7128 37 1 2.7238 -2.1374 1.9217 38 1 2.1470 -3.8161 1.7729 39 1 4.4560 -2.8270 3.5093 40 1 2.8811 -3.4317 4.0786 41 1 3.3714 -5.6403 3.0431 42 1 4.6053 -5.1980 4.2469 43 1 7.9857 -6.1640 -0.1620 44 1 3.9272 -5.5118 0.5729 45 1 5.4543 -4.7370 0.0778 46 1 1.6513 -2.1299 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:23 Heat of formation + Delta-G solvation = 56.832652 kcal Electronic energy + Delta-G solvation = -30550.457056 eV Core-core repulsion = 26633.727822 eV Total energy + Delta-G solvation = -3916.729234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.24604 -41.62464 -39.93636 -38.37422 -36.33699 -35.39269 -33.70540 -32.59691 -32.47206 -31.69763 -31.37301 -27.77948 -27.21926 -26.69961 -24.62153 -24.29559 -23.56438 -23.13916 -22.45211 -21.43564 -20.19728 -19.23324 -18.62402 -18.00447 -17.53549 -16.96033 -16.74323 -16.54419 -16.31922 -15.77623 -15.61929 -15.48010 -15.32465 -15.11326 -14.81384 -14.60051 -14.56754 -14.29279 -13.90385 -13.54958 -13.34520 -13.13380 -12.99428 -12.95550 -12.71985 -12.64643 -12.37555 -12.31913 -12.23441 -11.92908 -11.69989 -11.65050 -11.57822 -11.19616 -11.00123 -10.78692 -10.57644 -10.56396 -10.09123 -9.66221 -9.49646 -8.13870 -6.31717 -0.38478 0.01227 0.80362 1.35943 1.37711 1.41109 1.49691 1.60015 1.78756 2.05038 2.38858 2.46745 3.14515 3.34270 3.43217 3.54028 3.67541 3.83699 3.99030 4.07039 4.11162 4.18292 4.20626 4.26584 4.37970 4.50964 4.53949 4.65319 4.70293 4.75155 4.78871 4.87548 4.94914 4.96561 5.03062 5.06039 5.16264 5.20765 5.22807 5.30266 5.32082 5.45887 5.49141 5.57890 5.68128 5.86143 5.95785 6.00775 6.28631 6.52258 6.81959 7.14921 7.39458 7.56517 8.88528 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.004269 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.294853 B = 6558.063879 C = 8086.259292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 C -0.073 4.073 4 C -0.095 4.095 5 C 0.116 3.884 6 N -0.425 5.425 7 C 0.178 3.822 8 N -0.335 5.335 9 N -0.338 5.338 10 C 0.178 3.822 11 C -0.123 4.123 12 C 0.534 3.466 13 O -0.582 6.582 14 N -0.597 5.597 15 C 0.100 3.900 16 C -0.127 4.127 17 C -0.105 4.105 18 C 0.041 3.959 19 H -0.018 1.018 20 C -0.534 4.534 21 H 0.064 0.936 22 C 0.010 3.990 23 N -0.914 5.914 24 Si 0.955 3.045 25 H -0.256 1.256 26 H -0.283 1.283 27 H -0.286 1.286 28 C 0.127 3.873 29 C -0.079 4.079 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.181 0.819 34 H 0.161 0.839 35 H 0.206 0.794 36 H 0.264 0.736 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.256 0.744 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.392 18.069 1.549 28.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.063 4.063 3 C -0.091 4.091 4 C -0.115 4.115 5 C 0.024 3.976 6 N -0.112 5.112 7 C -0.110 4.110 8 N -0.172 5.172 9 N -0.175 5.175 10 C -0.109 4.109 11 C -0.127 4.127 12 C 0.323 3.677 13 O -0.462 6.462 14 N -0.328 5.328 15 C -0.021 4.021 16 C -0.165 4.165 17 C -0.142 4.142 18 C 0.021 3.979 19 H 0.001 0.999 20 C -0.572 4.572 21 H 0.082 0.918 22 C -0.190 4.190 23 N -0.553 5.553 24 Si 0.780 3.220 25 H -0.180 1.180 26 H -0.209 1.209 27 H -0.212 1.212 28 C 0.005 3.995 29 C -0.098 4.098 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.198 0.802 34 H 0.179 0.821 35 H 0.222 0.778 36 H 0.280 0.720 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.090 0.910 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.231 17.959 1.020 27.071 hybrid contribution 0.284 -1.772 -0.354 1.830 sum -19.946 16.186 0.666 25.696 Atomic orbital electron populations 1.20955 0.87423 1.04586 1.04295 1.20376 0.98495 0.91499 0.95963 1.21567 0.92016 0.99695 0.95796 1.21325 0.95425 0.95403 0.99307 1.17828 0.78700 0.94575 1.06449 1.44006 1.06572 1.38360 1.22269 1.26519 0.86593 1.00018 0.97912 1.74064 1.19327 1.13949 1.09839 1.74012 1.20101 1.14645 1.08715 1.27485 0.85663 0.99903 0.97821 1.19912 0.95610 0.90713 1.06505 1.18927 0.82893 0.84612 0.81316 1.90857 1.32717 1.81139 1.41503 1.48468 1.41201 1.13422 1.29685 1.22183 0.90638 1.03109 0.86211 1.21933 1.00880 0.96403 0.97236 1.21517 0.97877 0.96506 0.98338 1.18872 0.92825 0.94793 0.91369 0.99937 1.21549 1.19780 0.97310 1.18577 0.91767 1.25901 0.96912 1.00977 0.95195 1.70115 1.28269 1.35403 1.21515 0.85549 0.78010 0.80310 0.78090 1.17971 1.20917 1.21235 1.21725 0.95531 0.80183 1.02102 1.21306 0.89788 1.00669 0.98052 0.88854 0.88970 0.90859 0.80180 0.82139 0.77786 0.72018 0.87726 0.89234 0.93506 0.87345 0.92060 0.93033 0.93461 0.93997 0.90952 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.44 10.00 71.24 0.71 0.27 16 2 C -0.06 -0.64 5.87 -19.89 -0.12 -0.76 16 3 C -0.07 -0.59 9.68 22.30 0.22 -0.38 16 4 C -0.10 -1.33 9.77 22.35 0.22 -1.11 16 5 C 0.12 2.87 5.98 38.45 0.23 3.10 16 6 N -0.42 -13.55 2.28 -353.11 -0.81 -14.35 16 7 C 0.18 7.06 10.82 179.83 1.95 9.01 16 8 N -0.33 -15.16 12.19 -59.45 -0.72 -15.88 16 9 N -0.34 -13.71 12.19 -59.45 -0.72 -14.43 16 10 C 0.18 5.48 12.57 179.83 2.26 7.74 16 11 C -0.12 -3.36 4.78 -20.00 -0.10 -3.46 16 12 C 0.53 21.31 5.94 86.72 0.52 21.82 16 13 O -0.58 -30.51 15.35 -3.98 -0.06 -30.57 16 14 N -0.60 -22.95 2.97 -822.56 -2.45 -25.39 16 15 C 0.10 2.60 5.32 86.36 0.46 3.06 16 16 C -0.13 -3.50 6.09 30.68 0.19 -3.32 16 17 C -0.10 -3.90 5.10 30.63 0.16 -3.75 16 18 C 0.04 2.04 2.25 -11.46 -0.03 2.02 16 19 H -0.02 -1.04 8.14 -2.38 -0.02 -1.05 16 20 C -0.53 -29.63 8.56 25.60 0.22 -29.41 16 21 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 22 C 0.01 0.55 5.30 84.66 0.45 1.00 16 23 N -0.91 -57.92 11.39 21.45 0.24 -57.68 16 24 Si 0.95 45.54 29.54 68.60 2.03 47.56 16 25 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 C 0.13 6.27 5.41 86.36 0.47 6.74 16 29 C -0.08 -1.41 7.22 22.52 0.16 -1.25 16 30 H 0.09 0.15 8.14 -2.38 -0.02 0.14 16 31 H 0.09 0.04 8.08 -2.39 -0.02 0.03 16 32 H 0.07 0.32 8.08 -2.39 -0.02 0.30 16 33 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 34 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.21 7.96 8.05 -2.91 -0.02 7.94 16 36 H 0.26 4.91 8.06 -2.91 -0.02 4.89 16 37 H 0.10 2.10 5.17 -2.39 -0.01 2.09 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 4.41 5.11 -2.39 -0.01 4.40 16 46 H 0.15 2.35 7.43 -2.91 -0.02 2.33 16 Total: -1.00 -89.73 375.22 6.46 -83.27 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.99 Total: 16.14 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 7.96 Total: 11.33 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -4.46 Total: -127.74 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.06 Total: -30.57 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -89.73 6.46 -83.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.105 kcal (2) G-P(sol) polarization free energy of solvation -89.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds