Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00298 * 2 1 4 4 H 1.48496 * 109.47252 * 274.48696 * 3 2 1 5 5 H 1.48511 * 109.46798 * 34.48317 * 3 2 1 6 6 H 1.48498 * 109.47185 * 154.48183 * 3 2 1 7 7 C 1.38815 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99970 * 163.66111 * 7 2 1 9 9 N 1.36940 * 120.00027 * 343.66228 * 7 2 1 10 10 C 1.47152 * 120.71150 * 154.54445 * 9 7 2 11 11 C 1.53891 * 108.03045 * 132.75511 * 10 9 7 12 12 H 1.08999 * 112.58021 * 182.22796 * 11 10 9 13 13 C 1.54131 * 107.71043 * 306.32672 * 11 10 9 14 14 C 1.54275 * 104.88912 * 89.40952 * 13 11 10 15 15 C 1.54541 * 104.85072 * 359.80847 * 14 13 11 16 16 H 1.08999 * 112.18794 * 146.40842 * 15 14 13 17 17 C 1.47981 * 120.64150 * 334.25040 * 9 7 2 18 18 N 1.48308 * 107.20738 * 58.36336 * 11 10 9 19 19 C 1.34772 * 128.07399 * 106.70417 * 18 11 10 20 20 O 1.21286 * 119.99800 * 179.67775 * 19 18 11 21 21 C 1.50694 * 120.00360 * 359.67868 * 19 18 11 22 22 C 1.50705 * 109.47501 * 179.97438 * 21 19 18 23 23 C 1.34453 * 126.51540 * 264.69101 * 22 21 19 24 24 N 1.36677 * 109.96564 * 179.82867 * 23 22 21 25 25 H 0.96998 * 125.04536 * 180.20754 * 24 23 22 26 26 C 1.37544 * 109.89732 * 0.44610 * 24 23 22 27 27 C 1.38871 * 134.46425 * 179.70284 * 26 24 23 28 28 N 1.31742 * 120.27172 * 180.02562 * 27 26 24 29 29 C 1.32297 * 122.57169 * 359.97438 * 28 27 26 30 30 C 1.36638 * 121.32158 * 359.97438 * 29 28 27 31 31 C 1.39833 * 118.70056 * 0.02562 * 30 29 28 32 32 H 0.97001 * 119.99605 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.75293 * 13.12301 * 10 9 7 34 34 H 1.09001 * 109.79951 * 252.41434 * 10 9 7 35 35 H 1.09003 * 110.50739 * 330.47097 * 13 11 10 36 36 H 1.08998 * 110.27512 * 208.23276 * 13 11 10 37 37 H 1.09001 * 110.36560 * 240.96526 * 14 13 11 38 38 H 1.09000 * 110.45673 * 118.69927 * 14 13 11 39 39 H 1.08997 * 109.69516 * 107.67060 * 17 9 7 40 40 H 1.09000 * 109.93390 * 346.86005 * 17 9 7 41 41 H 1.08997 * 109.47179 * 300.00125 * 21 19 18 42 42 H 1.09003 * 109.47339 * 60.00322 * 21 19 18 43 43 H 1.07998 * 125.01775 * 359.97348 * 23 22 21 44 44 H 1.08001 * 119.86156 * 0.05364 * 27 26 24 45 45 H 1.08005 * 119.34171 * 179.97438 * 29 28 27 46 46 H 1.08005 * 120.65382 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4030 2.1011 -1.3957 5 1 1.4983 2.6234 0.7927 6 1 3.5920 1.4145 0.6031 7 6 2.0103 -1.2022 -0.0005 8 1 3.0575 -1.2210 -0.2637 9 7 1.3670 -2.3643 0.3325 10 6 1.8508 -3.6610 -0.1674 11 6 1.8988 -4.6408 1.0183 12 1 2.2862 -5.6199 0.7366 13 6 2.7353 -3.9853 2.1346 14 6 1.7180 -3.1853 2.9744 15 6 0.3568 -3.4274 2.2838 16 1 -0.4675 -3.4532 2.9964 17 6 0.1744 -2.3419 1.2084 18 7 0.5275 -4.7203 1.5776 19 6 -0.3551 -5.7334 1.4733 20 8 -1.4449 -5.6446 1.9982 21 6 0.0119 -6.9765 0.7046 22 6 -1.1398 -7.9478 0.7404 23 6 -1.3009 -8.9664 1.6031 24 7 -2.4663 -9.6272 1.3327 25 1 -2.7978 -10.3954 1.8235 26 6 -3.0963 -9.0444 0.2579 27 6 -4.2738 -9.2970 -0.4336 28 7 -4.6201 -8.5394 -1.4543 29 6 -3.8840 -7.5206 -1.8672 30 6 -2.7102 -7.1955 -1.2480 31 6 -2.2906 -7.9642 -0.1579 32 1 -0.4849 0.8401 0.0004 33 1 2.8491 -3.5440 -0.5892 34 1 1.1708 -4.0394 -0.9306 35 1 3.4840 -3.3174 1.7087 36 1 3.2142 -4.7499 2.7463 37 1 1.9665 -2.1241 2.9614 38 1 1.6946 -3.5561 3.9992 39 1 -0.7180 -2.5532 0.6193 40 1 0.0803 -1.3653 1.6832 41 1 0.2328 -6.7123 -0.3295 42 1 0.8897 -7.4377 1.1572 43 1 -0.6123 -9.2230 2.3945 44 1 -4.9085 -10.1175 -0.1332 45 1 -4.2177 -6.9340 -2.7105 46 1 -2.1175 -6.3616 -1.5944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017848310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = 54.255277 kcal Electronic energy + Delta-G solvation = -29921.400340 eV Core-core repulsion = 26004.559343 eV Total energy + Delta-G solvation = -3916.840997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53741 -41.46804 -39.32121 -38.83232 -35.87410 -34.24913 -32.98908 -32.73798 -31.91371 -31.66182 -30.86895 -28.49080 -27.78175 -25.23446 -24.71113 -24.56972 -23.48634 -22.55708 -21.54312 -20.56971 -19.66057 -19.07472 -18.71577 -17.81119 -17.67519 -16.83975 -16.70762 -16.48025 -16.08582 -15.94716 -15.63333 -15.56093 -15.29290 -15.01651 -14.77171 -14.39919 -14.20953 -13.95820 -13.68481 -13.62333 -13.54822 -13.33208 -13.11959 -12.82582 -12.66750 -12.64714 -12.42481 -12.23873 -12.09134 -12.00749 -11.69558 -11.52173 -11.09639 -11.07011 -10.71520 -10.60164 -10.56498 -9.71280 -9.56981 -8.78852 -8.64650 -7.83732 -5.28755 0.00106 0.49661 1.47969 1.50127 1.54641 1.59418 1.78708 2.13434 2.25370 2.53223 2.94680 3.31783 3.52732 3.56009 3.71880 3.74169 3.78853 3.90906 3.95326 4.09471 4.16490 4.18943 4.28848 4.37792 4.45660 4.55800 4.59789 4.63822 4.67079 4.68183 4.81733 4.90982 4.92938 4.98840 5.08210 5.14131 5.20492 5.25717 5.30825 5.43658 5.52632 5.57800 5.61460 5.65494 5.70749 5.95813 6.35052 6.64140 6.84330 7.06574 7.11659 7.32989 7.83202 8.37639 9.22563 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.003057 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.098486 B = 9156.374348 C =10115.231946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.966 3.034 4 H -0.291 1.291 5 H -0.301 1.301 6 H -0.261 1.261 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.129 3.871 11 C 0.118 3.882 12 H 0.140 0.860 13 C -0.103 4.103 14 C -0.105 4.105 15 C 0.108 3.892 16 H 0.070 0.930 17 C 0.190 3.810 18 N -0.610 5.610 19 C 0.523 3.477 20 O -0.593 6.593 21 C -0.047 4.047 22 C -0.189 4.189 23 C 0.101 3.899 24 N -0.564 5.564 25 H 0.438 0.562 26 C 0.025 3.975 27 C 0.111 3.889 28 N -0.495 5.495 29 C 0.041 3.959 30 C -0.139 4.139 31 C -0.086 4.086 32 H 0.246 0.754 33 H 0.081 0.919 34 H 0.003 0.997 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.074 0.926 39 H -0.029 1.029 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.142 0.858 43 H 0.217 0.783 44 H 0.186 0.814 45 H 0.164 0.836 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -22.834 5.055 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.251 4.251 3 Si 0.794 3.206 4 H -0.218 1.218 5 H -0.227 1.227 6 H -0.185 1.185 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.003 3.997 11 C 0.014 3.986 12 H 0.157 0.843 13 C -0.141 4.141 14 C -0.144 4.144 15 C 0.003 3.997 16 H 0.089 0.911 17 C 0.064 3.936 18 N -0.343 5.343 19 C 0.314 3.686 20 O -0.474 6.474 21 C -0.087 4.087 22 C -0.196 4.196 23 C -0.029 4.029 24 N -0.169 5.169 25 H 0.279 0.721 26 C -0.085 4.085 27 C -0.057 4.057 28 N -0.204 5.204 29 C -0.108 4.108 30 C -0.160 4.160 31 C -0.097 4.097 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.021 0.979 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.093 0.907 39 H -0.011 1.011 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.160 0.840 43 H 0.234 0.766 44 H 0.203 0.797 45 H 0.182 0.818 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.502 -22.967 4.867 23.610 hybrid contribution 0.102 1.862 0.154 1.871 sum 2.604 -21.106 5.022 21.851 Atomic orbital electron populations 1.70233 1.06968 1.25524 1.56407 1.25791 0.95838 1.01616 1.01900 0.85283 0.78430 0.79794 0.77074 1.21815 1.22747 1.18540 1.19570 0.92877 0.85242 1.40016 0.90166 1.44430 1.31430 1.02176 1.54376 1.21700 0.98321 0.85883 0.93747 1.23005 0.80805 1.00316 0.94466 0.84258 1.22236 0.96907 0.99075 0.95922 1.22226 0.92992 1.00854 0.98318 1.22834 0.98775 0.83811 0.94245 0.91141 1.20980 0.87123 0.95836 0.89704 1.49356 1.16438 1.15728 1.52741 1.21082 0.82868 0.84392 0.80223 1.90656 1.23997 1.82124 1.50660 1.19896 0.97568 0.89714 1.01500 1.19754 0.97977 1.01190 1.00671 1.22322 0.88933 0.92750 0.98918 1.41565 1.18903 1.29679 1.26719 0.72074 1.19439 0.97720 0.97492 0.93880 1.22319 0.92452 0.99521 0.91373 1.67584 1.32800 1.06182 1.13833 1.22241 0.92059 0.95607 1.00886 1.21347 0.98367 1.00079 0.96184 1.19626 0.96579 0.96399 0.97110 0.94527 0.90100 0.97925 0.90633 0.88822 0.92168 0.90708 1.01076 0.92513 0.88100 0.84002 0.76618 0.79747 0.81850 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.86 11.12 21.65 0.24 -56.62 16 2 C -0.06 -3.13 4.96 84.86 0.42 -2.71 16 3 Si 0.97 44.10 29.58 68.60 2.03 46.13 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.25 -12.76 9.65 84.03 0.81 -11.95 16 8 H 0.08 3.89 7.87 -2.91 -0.02 3.87 16 9 N -0.60 -28.44 2.31 -693.09 -1.60 -30.04 16 10 C 0.13 4.73 6.01 86.56 0.52 5.25 16 11 C 0.12 3.20 3.96 45.33 0.18 3.38 16 12 H 0.14 2.42 7.42 -2.39 -0.02 2.40 16 13 C -0.10 -2.67 6.16 31.41 0.19 -2.48 16 14 C -0.11 -3.40 6.19 31.55 0.20 -3.20 16 15 C 0.11 4.29 4.12 45.47 0.19 4.47 16 16 H 0.07 2.96 7.93 -2.39 -0.02 2.94 16 17 C 0.19 9.51 4.62 86.39 0.40 9.91 16 18 N -0.61 -20.51 2.74 -757.27 -2.08 -22.58 16 19 C 0.52 17.59 7.92 87.66 0.69 18.29 16 20 O -0.59 -25.62 16.35 -3.05 -0.05 -25.67 16 21 C -0.05 -1.06 5.23 29.10 0.15 -0.91 16 22 C -0.19 -4.55 4.80 -18.72 -0.09 -4.64 16 23 C 0.10 1.65 11.74 83.07 0.97 2.63 16 24 N -0.56 -8.70 6.06 -187.58 -1.14 -9.84 16 25 H 0.44 3.07 8.96 -92.71 -0.83 2.24 16 26 C 0.02 0.59 7.33 39.08 0.29 0.87 16 27 C 0.11 2.55 11.25 84.86 0.95 3.51 16 28 N -0.49 -13.90 10.32 -196.32 -2.03 -15.93 16 29 C 0.04 1.17 11.11 84.25 0.94 2.11 16 30 C -0.14 -4.28 10.12 22.28 0.23 -4.05 16 31 C -0.09 -2.47 6.42 -20.20 -0.13 -2.60 16 32 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.08 2.66 7.96 -2.39 -0.02 2.64 16 34 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.08 2.11 7.83 -2.39 -0.02 2.10 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 2.24 7.84 -2.39 -0.02 2.22 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H -0.03 -1.71 8.14 -2.39 -0.02 -1.72 16 40 H 0.06 3.19 6.30 -2.39 -0.02 3.17 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.14 1.86 8.03 -2.39 -0.02 1.84 16 43 H 0.22 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.19 2.69 8.06 -2.91 -0.02 2.66 16 45 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 46 H 0.12 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -82.00 372.75 2.47 -79.53 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.18 Total: 17.14 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 6.91 Total: 17.88 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -6.60 Total: -135.01 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -82.00 2.47 -79.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017848310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.787 kcal (2) G-P(sol) polarization free energy of solvation -82.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds