Wall clock time and date at job start Sat Apr 11 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99582 * 2 1 4 4 H 1.48496 * 109.47281 * 239.99979 * 3 2 1 5 5 H 1.48495 * 109.47355 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47034 * 120.00612 * 3 2 1 7 7 C 1.38807 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99885 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.04315 * 33.83888 * 10 9 7 12 12 C 1.53699 * 109.90436 * 272.67680 * 10 9 7 13 13 C 1.55355 * 107.06535 * 241.21342 * 12 10 9 14 14 C 1.54489 * 104.21946 * 337.73082 * 13 12 10 15 15 H 1.08999 * 113.38161 * 271.18336 * 14 13 12 16 16 C 1.54111 * 108.73058 * 144.08207 * 14 13 12 17 17 N 1.47069 * 107.53093 * 271.54636 * 16 14 13 18 18 C 1.34777 * 125.70684 * 181.97077 * 17 16 14 19 19 O 1.21587 * 119.99917 * 184.82279 * 18 17 16 20 20 C 1.47658 * 120.00085 * 4.82452 * 18 17 16 21 21 C 1.41771 * 120.37129 * 351.92241 * 20 18 17 22 22 C 1.34544 * 120.14722 * 179.97438 * 21 20 18 23 23 N 1.36722 * 120.95332 * 359.97438 * 22 21 20 24 24 C 1.36433 * 132.26430 * 180.02562 * 23 22 21 25 25 C 1.35455 * 107.21734 * 180.23866 * 24 23 22 26 26 N 1.33182 * 108.62163 * 359.56732 * 25 24 23 27 27 C 1.32651 * 109.12356 * 0.44153 * 26 25 24 28 28 C 1.38435 * 120.37148 * 171.89723 * 20 18 17 29 29 C 1.47391 * 108.58102 * 2.23271 * 17 16 14 30 30 C 1.53802 * 109.89975 * 154.99692 * 10 9 7 31 31 H 1.08999 * 113.28161 * 264.64582 * 30 10 9 32 32 H 0.97004 * 120.00355 * 359.97438 * 1 2 3 33 33 H 0.96998 * 119.99447 * 0.02562 * 9 7 2 34 34 H 1.09003 * 110.01360 * 1.13006 * 12 10 9 35 35 H 1.09001 * 110.01991 * 122.46948 * 12 10 9 36 36 H 1.09008 * 111.17423 * 218.84227 * 13 12 10 37 37 H 1.08993 * 110.15442 * 96.11918 * 13 12 10 38 38 H 1.08996 * 109.84181 * 152.04897 * 16 14 13 39 39 H 1.09004 * 109.92377 * 31.09186 * 16 14 13 40 40 H 1.07998 * 119.92807 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.52268 * 179.97438 * 22 21 20 42 42 H 1.07999 * 126.39029 * 359.97438 * 24 23 22 43 43 H 1.08001 * 125.68615 * 179.69826 * 25 24 23 44 44 H 1.08007 * 120.45473 * 0.02562 * 28 20 18 45 45 H 1.08998 * 110.32923 * 93.72452 * 29 17 16 46 46 H 1.08997 * 110.32479 * 215.94365 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9816 -3.5549 0.5697 12 6 2.3783 -4.0761 -1.4441 13 6 1.6738 -5.4387 -1.6899 14 6 1.4702 -6.0215 -0.2737 15 1 2.3134 -6.6185 0.0737 16 6 0.1286 -6.7791 -0.2385 17 7 -0.9172 -5.8113 0.1256 18 6 -2.2240 -6.0927 0.2974 19 8 -3.0159 -5.1956 0.5129 20 6 -2.6941 -7.4906 0.2240 21 6 -1.8150 -8.5214 -0.1937 22 6 -2.2479 -9.7937 -0.2584 23 7 -3.5339 -10.1167 0.0749 24 6 -4.2061 -11.3038 0.0948 25 6 -5.4703 -11.0419 0.5046 26 7 -5.5786 -9.7358 0.7415 27 6 -4.4166 -9.1497 0.4845 28 6 -3.9979 -7.8093 0.5627 29 6 -0.2981 -4.4810 0.2649 30 6 1.1850 -4.7654 0.6107 31 1 1.3742 -4.9270 1.6719 32 1 -0.4851 0.8401 0.0004 33 1 0.3557 -2.3880 -0.0005 34 1 2.0061 -3.3258 -2.1418 35 1 3.4544 -4.1984 -1.5673 36 1 2.2985 -6.1029 -2.2873 37 1 0.7116 -5.2814 -2.1773 38 1 0.1722 -7.5742 0.5058 39 1 -0.0847 -7.2026 -1.2200 40 1 -0.7955 -8.2850 -0.4604 41 1 -1.5697 -10.5710 -0.5783 42 1 -3.8062 -12.2711 -0.1712 43 1 -6.2583 -11.7710 0.6220 44 1 -4.6841 -7.0392 0.8834 45 1 -0.3717 -3.9291 -0.6721 46 1 -0.7747 -3.9242 1.0717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026311164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:07 Heat of formation + Delta-G solvation = 107.777436 kcal Electronic energy + Delta-G solvation = -29289.408270 eV Core-core repulsion = 25374.888168 eV Total energy + Delta-G solvation = -3914.520102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.11972 -40.73290 -38.77046 -37.18034 -35.29498 -33.86375 -33.32046 -31.18715 -30.82133 -29.58415 -28.79463 -28.54577 -25.89479 -24.76755 -23.82450 -23.33175 -22.60487 -22.11341 -19.93869 -19.71999 -18.96241 -18.18976 -18.04192 -17.29129 -16.37643 -16.18316 -15.95546 -15.59871 -15.11494 -14.89536 -14.74534 -14.55821 -14.05899 -14.00925 -13.83151 -13.58918 -13.14159 -12.94463 -12.62665 -12.52088 -12.24521 -12.09997 -11.95167 -11.64786 -11.31210 -11.18871 -10.81032 -10.71179 -10.63453 -10.52069 -10.44811 -10.31044 -10.20106 -9.97502 -9.80533 -9.62701 -9.21868 -8.92184 -8.61568 -8.15046 -6.98665 -5.76741 -3.07206 0.21296 0.75601 2.24264 2.40371 2.78309 2.86965 3.43494 3.44227 3.48075 3.49791 3.91077 4.03844 4.27853 4.29059 4.41263 4.52197 4.64540 4.71081 4.82378 4.94648 5.10393 5.11293 5.18500 5.26661 5.28712 5.39600 5.44665 5.58143 5.61160 5.70061 5.73936 5.78636 5.87884 5.90244 5.96889 6.05099 6.17988 6.24979 6.29331 6.40922 6.44088 6.46774 6.60884 6.66354 6.74423 7.05279 7.50120 7.52793 7.69367 8.13135 8.41153 9.51936 10.08233 10.41258 11.45217 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.002483 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.323224 B =11271.831114 C =12286.483384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.055 0.945 12 C -0.144 4.144 13 C -0.117 4.117 14 C -0.105 4.105 15 H 0.102 0.898 16 C 0.093 3.907 17 N -0.607 5.607 18 C 0.573 3.427 19 O -0.524 6.524 20 C -0.114 4.114 21 C -0.152 4.152 22 C 0.045 3.955 23 N -0.354 5.354 24 C -0.095 4.095 25 C 0.031 3.969 26 N -0.480 5.480 27 C 0.209 3.791 28 C -0.004 4.004 29 C 0.117 3.883 30 C -0.104 4.104 31 H 0.092 0.908 32 H 0.257 0.743 33 H 0.387 0.613 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.186 0.814 41 H 0.168 0.832 42 H 0.184 0.816 43 H 0.183 0.817 44 H 0.166 0.834 45 H 0.086 0.914 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 -26.410 -1.783 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.368 5.368 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.185 4.185 13 C -0.155 4.155 14 C -0.124 4.124 15 H 0.120 0.880 16 C -0.029 4.029 17 N -0.341 5.341 18 C 0.361 3.639 19 O -0.400 6.400 20 C -0.123 4.123 21 C -0.171 4.171 22 C -0.076 4.076 23 N -0.026 5.026 24 C -0.228 4.228 25 C -0.122 4.122 26 N -0.200 5.200 27 C -0.032 4.032 28 C -0.025 4.025 29 C -0.004 4.004 30 C -0.124 4.124 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.223 0.777 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.203 0.797 41 H 0.185 0.815 42 H 0.202 0.798 43 H 0.200 0.800 44 H 0.183 0.817 45 H 0.104 0.896 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.758 -25.388 -1.388 25.486 hybrid contribution 0.905 0.280 -0.389 1.025 sum -0.852 -25.107 -1.777 25.185 Atomic orbital electron populations 1.69646 1.05065 1.25947 1.57083 1.24758 0.95480 0.97709 1.02791 0.86292 0.78524 0.83693 0.77778 1.21309 1.21721 1.21295 1.19179 0.90947 0.84113 1.43351 0.91219 1.42711 1.05936 0.99647 1.88534 1.20634 0.93986 0.85609 0.92588 0.92737 1.23177 0.98959 0.95557 1.00807 1.22559 1.00853 0.97337 0.94736 1.23124 0.95382 0.96451 0.97410 0.87985 1.22542 0.88354 0.92437 0.99603 1.48399 1.06089 1.11212 1.68358 1.17511 0.81074 0.87482 0.77824 1.90865 1.53081 1.47313 1.48789 1.19927 0.94042 0.94131 1.04212 1.22361 1.03296 0.90609 1.00884 1.21554 0.84188 0.98499 1.03371 1.42931 1.09736 1.09119 1.40838 1.22787 0.94641 0.89645 1.15745 1.22614 0.95709 0.92971 1.00941 1.70707 1.19972 1.07123 1.22207 1.20786 0.86624 0.90993 1.04834 1.20724 0.95164 0.91887 0.94712 1.22396 0.91858 0.82830 1.03325 1.23365 0.94622 0.95122 0.99335 0.89003 0.93313 0.77694 0.90685 0.93071 0.92075 0.91805 0.90762 0.90561 0.79733 0.81518 0.79846 0.80000 0.81693 0.89580 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.73 -17.16 4.78 -52.67 -0.25 -17.42 16 10 C 0.18 3.27 3.22 -67.15 -0.22 3.05 16 11 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 12 C -0.14 -2.26 6.54 -25.12 -0.16 -2.43 16 13 C -0.12 -1.39 5.70 -24.70 -0.14 -1.53 16 14 C -0.10 -1.09 4.09 -87.52 -0.36 -1.45 16 15 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.09 0.88 4.15 -3.15 -0.01 0.87 16 17 N -0.61 -8.45 3.32 -173.44 -0.58 -9.03 16 18 C 0.57 8.87 7.81 -12.41 -0.10 8.77 16 19 O -0.52 -10.37 16.68 5.29 0.09 -10.28 16 20 C -0.11 -1.40 5.90 -104.63 -0.62 -2.02 16 21 C -0.15 -1.30 8.50 -39.54 -0.34 -1.63 16 22 C 0.04 0.33 10.91 -16.68 -0.18 0.15 16 23 N -0.35 -3.47 2.94 -62.75 -0.18 -3.66 16 24 C -0.10 -0.75 11.74 -16.50 -0.19 -0.94 16 25 C 0.03 0.29 11.83 -17.96 -0.21 0.08 16 26 N -0.48 -6.30 11.31 -12.80 -0.14 -6.45 16 27 C 0.21 2.65 7.79 -155.97 -1.22 1.43 16 28 C 0.00 -0.05 9.70 -38.60 -0.37 -0.42 16 29 C 0.12 1.97 4.39 -2.54 -0.01 1.96 16 30 C -0.10 -1.52 4.14 -87.45 -0.36 -1.88 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.39 9.80 5.29 -40.82 -0.22 9.58 16 34 H 0.07 1.41 7.91 -51.93 -0.41 1.00 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.06 0.83 7.40 -51.93 -0.38 0.44 16 38 H 0.07 0.54 6.63 -51.93 -0.34 0.19 16 39 H 0.08 0.58 6.48 -51.93 -0.34 0.25 16 40 H 0.19 1.16 2.86 -54.60 -0.16 1.00 16 41 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.17 2.22 7.69 -52.48 -0.40 1.81 16 45 H 0.09 1.66 6.35 -51.93 -0.33 1.33 16 46 H 0.08 1.65 8.02 -51.93 -0.42 1.23 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -34.98 364.42 -10.54 -45.52 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.92 Total: 9.02 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -4.74 Total: -3.10 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -0.43 Total: -63.79 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.98 -10.54 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026311164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.295 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds