Wall clock time and date at job start Sat Apr 11 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99582 * 2 1 4 4 H 1.48496 * 109.47281 * 239.99979 * 3 2 1 5 5 H 1.48495 * 109.47355 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47034 * 120.00612 * 3 2 1 7 7 C 1.38807 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99885 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.04315 * 33.83888 * 10 9 7 12 12 C 1.53699 * 109.90436 * 272.67680 * 10 9 7 13 13 C 1.55355 * 107.06535 * 241.21342 * 12 10 9 14 14 C 1.54489 * 104.21946 * 337.73082 * 13 12 10 15 15 H 1.08999 * 113.38161 * 271.18336 * 14 13 12 16 16 C 1.54111 * 108.73058 * 144.08207 * 14 13 12 17 17 N 1.47069 * 107.53093 * 271.54636 * 16 14 13 18 18 C 1.34777 * 125.70684 * 181.97077 * 17 16 14 19 19 O 1.21587 * 119.99917 * 184.82279 * 18 17 16 20 20 C 1.47658 * 120.00085 * 4.82452 * 18 17 16 21 21 C 1.41771 * 120.37129 * 351.92241 * 20 18 17 22 22 C 1.34544 * 120.14722 * 179.97438 * 21 20 18 23 23 N 1.36722 * 120.95332 * 359.97438 * 22 21 20 24 24 C 1.36433 * 132.26430 * 180.02562 * 23 22 21 25 25 C 1.35455 * 107.21734 * 180.23866 * 24 23 22 26 26 N 1.33182 * 108.62163 * 359.56732 * 25 24 23 27 27 C 1.32651 * 109.12356 * 0.44153 * 26 25 24 28 28 C 1.38435 * 120.37148 * 171.89723 * 20 18 17 29 29 C 1.47391 * 108.58102 * 2.23271 * 17 16 14 30 30 C 1.53802 * 109.89975 * 154.99692 * 10 9 7 31 31 H 1.08999 * 113.28161 * 264.64582 * 30 10 9 32 32 H 0.97004 * 120.00355 * 359.97438 * 1 2 3 33 33 H 0.96998 * 119.99447 * 0.02562 * 9 7 2 34 34 H 1.09003 * 110.01360 * 1.13006 * 12 10 9 35 35 H 1.09001 * 110.01991 * 122.46948 * 12 10 9 36 36 H 1.09008 * 111.17423 * 218.84227 * 13 12 10 37 37 H 1.08993 * 110.15442 * 96.11918 * 13 12 10 38 38 H 1.08996 * 109.84181 * 152.04897 * 16 14 13 39 39 H 1.09004 * 109.92377 * 31.09186 * 16 14 13 40 40 H 1.07998 * 119.92807 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.52268 * 179.97438 * 22 21 20 42 42 H 1.07999 * 126.39029 * 359.97438 * 24 23 22 43 43 H 1.08001 * 125.68615 * 179.69826 * 25 24 23 44 44 H 1.08007 * 120.45473 * 0.02562 * 28 20 18 45 45 H 1.08998 * 110.32923 * 93.72452 * 29 17 16 46 46 H 1.08997 * 110.32479 * 215.94365 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9816 -3.5549 0.5697 12 6 2.3783 -4.0761 -1.4441 13 6 1.6738 -5.4387 -1.6899 14 6 1.4702 -6.0215 -0.2737 15 1 2.3134 -6.6185 0.0737 16 6 0.1286 -6.7791 -0.2385 17 7 -0.9172 -5.8113 0.1256 18 6 -2.2240 -6.0927 0.2974 19 8 -3.0159 -5.1956 0.5129 20 6 -2.6941 -7.4906 0.2240 21 6 -1.8150 -8.5214 -0.1937 22 6 -2.2479 -9.7937 -0.2584 23 7 -3.5339 -10.1167 0.0749 24 6 -4.2061 -11.3038 0.0948 25 6 -5.4703 -11.0419 0.5046 26 7 -5.5786 -9.7358 0.7415 27 6 -4.4166 -9.1497 0.4845 28 6 -3.9979 -7.8093 0.5627 29 6 -0.2981 -4.4810 0.2649 30 6 1.1850 -4.7654 0.6107 31 1 1.3742 -4.9270 1.6719 32 1 -0.4851 0.8401 0.0004 33 1 0.3557 -2.3880 -0.0005 34 1 2.0061 -3.3258 -2.1418 35 1 3.4544 -4.1984 -1.5673 36 1 2.2985 -6.1029 -2.2873 37 1 0.7116 -5.2814 -2.1773 38 1 0.1722 -7.5742 0.5058 39 1 -0.0847 -7.2026 -1.2200 40 1 -0.7955 -8.2850 -0.4604 41 1 -1.5697 -10.5710 -0.5783 42 1 -3.8062 -12.2711 -0.1712 43 1 -6.2583 -11.7710 0.6220 44 1 -4.6841 -7.0392 0.8834 45 1 -0.3717 -3.9291 -0.6721 46 1 -0.7747 -3.9242 1.0717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026311164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:06 Heat of formation + Delta-G solvation = 84.382217 kcal Electronic energy + Delta-G solvation = -29290.422763 eV Core-core repulsion = 25374.888168 eV Total energy + Delta-G solvation = -3915.534595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -43.83933 -41.85833 -39.95784 -38.04632 -36.74021 -34.99490 -34.64802 -32.74624 -31.81258 -30.55733 -29.95914 -29.64818 -27.21439 -25.89917 -25.15093 -24.61367 -23.54516 -22.79622 -20.99273 -20.82953 -20.30251 -19.24938 -18.95028 -18.85487 -17.44381 -17.05823 -16.92521 -16.73520 -16.68657 -16.10397 -15.75202 -15.53582 -15.28044 -15.07967 -14.81221 -14.58487 -14.36701 -14.26530 -13.99027 -13.65601 -13.28264 -13.25749 -13.02029 -12.87335 -12.85214 -12.57295 -12.37916 -12.19680 -12.08926 -11.71950 -11.62175 -11.49502 -11.39648 -11.25925 -11.20129 -11.04516 -10.90312 -9.92066 -9.78867 -8.98006 -8.87823 -7.92820 -5.21472 -0.64300 0.06938 1.45376 1.48570 1.54806 1.55693 1.61020 1.75211 1.96299 2.52722 2.56386 3.08758 3.30164 3.39485 3.42925 3.45147 3.59894 3.75520 3.82203 4.00307 4.20907 4.22808 4.26844 4.34257 4.38371 4.42001 4.49452 4.52700 4.60011 4.65203 4.67972 4.74929 4.79822 4.86017 4.92346 4.95100 5.07898 5.16368 5.21021 5.30999 5.36081 5.38418 5.50838 5.57837 5.58906 5.69814 6.03064 6.29361 6.40567 6.80800 6.94885 7.34488 8.14596 8.33219 9.30546 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.002483 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.323224 B =11271.831114 C =12286.483384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.083 4.083 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.170 3.830 11 H 0.055 0.945 12 C -0.140 4.140 13 C -0.109 4.109 14 C -0.081 4.081 15 H 0.150 0.850 16 C 0.083 3.917 17 N -0.602 5.602 18 C 0.563 3.437 19 O -0.589 6.589 20 C -0.113 4.113 21 C -0.158 4.158 22 C 0.068 3.932 23 N -0.358 5.358 24 C -0.068 4.068 25 C 0.009 3.991 26 N -0.525 5.525 27 C 0.178 3.822 28 C -0.031 4.031 29 C 0.125 3.875 30 C -0.100 4.100 31 H 0.101 0.899 32 H 0.248 0.752 33 H 0.373 0.627 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.216 0.784 41 H 0.226 0.774 42 H 0.235 0.765 43 H 0.209 0.791 44 H 0.136 0.864 45 H 0.052 0.948 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -32.177 -2.860 32.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.274 4.274 3 Si 0.801 3.199 4 H -0.202 1.202 5 H -0.229 1.229 6 H -0.203 1.203 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.384 5.384 10 C 0.061 3.939 11 H 0.073 0.927 12 C -0.181 4.181 13 C -0.147 4.147 14 C -0.100 4.100 15 H 0.168 0.832 16 C -0.037 4.037 17 N -0.334 5.334 18 C 0.354 3.646 19 O -0.470 6.470 20 C -0.122 4.122 21 C -0.177 4.177 22 C -0.052 4.052 23 N -0.030 5.030 24 C -0.201 4.201 25 C -0.143 4.143 26 N -0.246 5.246 27 C -0.062 4.062 28 C -0.053 4.053 29 C 0.002 3.998 30 C -0.120 4.120 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.207 0.793 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.232 0.768 41 H 0.243 0.757 42 H 0.252 0.748 43 H 0.226 0.774 44 H 0.153 0.847 45 H 0.071 0.929 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.987 -31.233 -2.480 31.395 hybrid contribution -0.237 1.933 -0.065 1.948 sum 1.751 -29.301 -2.544 29.463 Atomic orbital electron populations 1.69844 1.06821 1.25903 1.60050 1.25590 0.96232 1.01281 1.04345 0.85230 0.77084 0.79321 0.78265 1.20236 1.22867 1.20255 1.19644 0.91517 0.85300 1.40162 0.90227 1.42995 1.05634 1.01188 1.88583 1.21003 0.93981 0.84332 0.94548 0.92674 1.22969 1.00496 0.96977 0.97609 1.22549 1.00234 0.95548 0.96329 1.23213 0.97525 0.94428 0.94801 0.83193 1.23029 0.85960 0.92040 1.02698 1.48427 1.06550 1.10973 1.67431 1.18183 0.81053 0.88573 0.76789 1.90823 1.54916 1.49535 1.51768 1.19707 0.94414 0.92935 1.05133 1.22553 1.03743 0.89957 1.01493 1.22453 0.83409 0.99309 0.99993 1.43231 1.10423 1.08985 1.40361 1.23606 0.93635 0.90411 1.12417 1.23282 0.97762 0.92078 1.01162 1.70632 1.21159 1.09357 1.23501 1.20568 0.87611 0.91203 1.06851 1.20523 0.95586 0.92280 0.96922 1.22002 0.93807 0.84108 0.99921 1.23282 0.91605 0.96474 1.00658 0.88068 0.94342 0.79315 0.94842 0.91061 0.87928 0.93545 0.86599 0.87289 0.76848 0.75723 0.74831 0.77388 0.84656 0.92934 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.43 13.06 21.65 0.28 -62.15 16 2 C -0.08 -4.86 5.50 84.86 0.47 -4.40 16 3 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.23 -12.95 9.96 84.03 0.84 -12.12 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -36.96 4.78 -320.55 -1.53 -38.49 16 10 C 0.17 6.06 3.22 45.50 0.15 6.21 16 11 H 0.06 1.95 8.09 -2.39 -0.02 1.93 16 12 C -0.14 -4.22 6.54 31.64 0.21 -4.01 16 13 C -0.11 -2.18 5.70 31.91 0.18 -1.99 16 14 C -0.08 -1.30 4.09 -8.78 -0.04 -1.34 16 15 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 16 C 0.08 1.18 4.15 86.65 0.36 1.54 16 17 N -0.60 -16.78 3.32 -820.90 -2.73 -19.51 16 18 C 0.56 18.58 7.81 86.73 0.68 19.25 16 19 O -0.59 -26.29 16.68 -3.99 -0.07 -26.35 16 20 C -0.11 -2.78 5.90 -19.87 -0.12 -2.89 16 21 C -0.16 -2.03 8.50 22.30 0.19 -1.84 16 22 C 0.07 0.61 10.91 83.08 0.91 1.52 16 23 N -0.36 -5.69 2.94 -352.44 -1.04 -6.73 16 24 C -0.07 -0.75 11.74 83.33 0.98 0.23 16 25 C 0.01 0.16 11.83 83.84 0.99 1.15 16 26 N -0.53 -13.96 11.31 -194.41 -2.20 -16.16 16 27 C 0.18 4.51 7.79 133.97 1.04 5.56 16 28 C -0.03 -0.89 9.70 22.91 0.22 -0.66 16 29 C 0.12 4.48 4.39 86.87 0.38 4.86 16 30 C -0.10 -2.82 4.14 -8.74 -0.04 -2.86 16 31 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.37 20.54 5.29 -92.71 -0.49 20.05 16 34 H 0.03 1.28 7.91 -2.39 -0.02 1.26 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.05 1.11 7.40 -2.39 -0.02 1.09 16 38 H 0.12 0.86 6.63 -2.39 -0.02 0.84 16 39 H 0.11 0.98 6.48 -2.38 -0.02 0.96 16 40 H 0.22 1.26 2.86 -4.90 -0.01 1.25 16 41 H 0.23 -0.59 8.06 -2.91 -0.02 -0.61 16 42 H 0.24 0.06 8.06 -2.91 -0.02 0.03 16 43 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.14 4.38 7.69 -2.91 -0.02 4.36 16 45 H 0.05 2.23 6.35 -2.39 -0.02 2.22 16 46 H 0.04 1.67 8.02 -2.39 -0.02 1.65 16 Total: -1.00 -90.37 364.42 2.68 -87.69 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.53 Total: 24.32 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 7.40 Total: 8.20 kcal Atomic # 7 Polarization: -135.82 SS G_CDS: -7.21 Total: -143.04 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.07 Total: -26.35 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -90.37 2.68 -87.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026311164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.077 kcal (2) G-P(sol) polarization free energy of solvation -90.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds