Wall clock time and date at job start Sat Apr 11 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00369 * 2 1 4 4 H 1.48495 * 109.47444 * 270.00100 * 3 2 1 5 5 H 1.48505 * 109.46953 * 30.00163 * 3 2 1 6 6 H 1.48503 * 109.47094 * 149.99968 * 3 2 1 7 7 C 1.38817 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99963 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00019 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.06435 * 324.57353 * 10 9 7 12 12 C 1.54733 * 111.52950 * 203.74628 * 10 9 7 13 13 C 1.54116 * 106.76060 * 242.34176 * 12 10 9 14 14 C 1.54452 * 104.73125 * 335.69103 * 13 12 10 15 15 H 1.08990 * 113.74246 * 272.41065 * 14 13 12 16 16 C 1.54895 * 109.70501 * 143.79820 * 14 13 12 17 17 N 1.47354 * 105.01229 * 288.54128 * 16 14 13 18 18 C 1.34777 * 125.70042 * 155.08365 * 17 16 14 19 19 O 1.21527 * 120.00162 * 179.69174 * 18 17 16 20 20 C 1.48062 * 120.00179 * 359.97419 * 18 17 16 21 21 C 1.39760 * 119.47221 * 179.44426 * 20 18 17 22 22 C 1.38140 * 119.57445 * 179.76426 * 21 20 18 23 23 C 1.39254 * 118.37615 * 0.50415 * 22 21 20 24 24 N 1.37351 * 133.61311 * 179.74641 * 23 22 21 25 25 H 0.96997 * 125.05037 * 0.02562 * 24 23 22 26 26 C 1.36713 * 109.89661 * 179.97438 * 24 23 22 27 27 C 1.34293 * 110.02353 * 0.02562 * 26 24 23 28 28 C 1.41191 * 119.09839 * 359.74559 * 23 22 21 29 29 N 1.32445 * 119.46658 * 359.72126 * 20 18 17 30 30 C 1.47029 * 108.59923 * 334.82907 * 17 16 14 31 31 C 1.53913 * 109.91396 * 85.77091 * 10 9 7 32 32 H 1.09000 * 112.92035 * 265.08412 * 31 10 9 33 33 H 0.96997 * 120.00126 * 0.02562 * 1 2 3 34 34 H 0.97005 * 119.99509 * 359.97438 * 9 7 2 35 35 H 1.08995 * 110.72302 * 122.59664 * 12 10 9 36 36 H 1.08997 * 109.25870 * 1.28259 * 12 10 9 37 37 H 1.09000 * 110.38270 * 216.87552 * 13 12 10 38 38 H 1.09004 * 110.47867 * 94.55275 * 13 12 10 39 39 H 1.09005 * 110.44656 * 169.62872 * 16 14 13 40 40 H 1.09002 * 110.28873 * 47.37944 * 16 14 13 41 41 H 1.07998 * 120.21904 * 0.02562 * 21 20 18 42 42 H 1.08000 * 120.81293 * 180.24857 * 22 21 20 43 43 H 1.08006 * 124.98946 * 180.02562 * 26 24 23 44 44 H 1.07996 * 126.48390 * 179.97438 * 27 26 24 45 45 H 1.08990 * 109.83313 * 122.04418 * 30 17 16 46 46 H 1.09004 * 109.82721 * 242.92743 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 2.9674 -3.5630 -0.5961 12 6 1.2008 -4.8068 -0.5834 13 6 1.0166 -5.8382 0.5469 14 6 2.2196 -5.6085 1.4880 15 1 3.1078 -6.1763 1.2114 16 6 1.7797 -5.8176 2.9584 17 7 0.9306 -4.6548 3.2718 18 6 -0.0324 -4.6153 4.2139 19 8 -0.6692 -3.5953 4.3895 20 6 -0.3103 -5.8128 5.0393 21 6 -1.3034 -5.7559 6.0210 22 6 -1.5678 -6.8734 6.7889 23 6 -0.8191 -8.0252 6.5610 24 7 -0.8119 -9.2775 7.1251 25 1 -1.3948 -9.5681 7.8439 26 6 0.1383 -10.0539 6.5223 27 6 0.7685 -9.3508 5.5673 28 6 0.1729 -8.0118 5.5564 29 7 0.3901 -6.9189 4.8390 30 6 1.3135 -3.5430 2.3893 31 6 2.4124 -4.0588 1.4401 32 1 3.4127 -3.7419 1.7354 33 1 -0.4850 0.8400 -0.0004 34 1 0.3554 -2.3880 -0.0016 35 1 1.7019 -5.2701 -1.4332 36 1 0.2320 -4.4132 -0.8908 37 1 1.0377 -6.8508 0.1439 38 1 0.0807 -5.6605 1.0766 39 1 2.6485 -5.8400 3.6163 40 1 1.2078 -6.7406 3.0542 41 1 -1.8635 -4.8455 6.1755 42 1 -2.3335 -6.8529 7.5503 43 1 0.3508 -11.0818 6.7766 44 1 1.5639 -9.7050 4.9285 45 1 0.4496 -3.2153 1.8112 46 1 1.6965 -2.7138 2.9842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026311821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:25 Heat of formation + Delta-G solvation = 70.828316 kcal Electronic energy + Delta-G solvation = -29657.415665 eV Core-core repulsion = 25741.293329 eV Total energy + Delta-G solvation = -3916.122336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.83050 -40.16943 -38.62712 -37.26310 -34.90458 -33.28901 -32.92516 -30.76012 -30.60674 -29.71942 -28.81570 -28.11730 -25.43216 -24.77325 -23.39392 -22.93281 -22.40890 -21.19063 -19.65626 -19.46566 -18.57636 -18.54258 -17.31481 -16.98714 -16.97101 -15.75427 -15.42132 -15.24108 -14.90890 -14.66761 -14.46808 -13.98599 -13.74860 -13.53284 -13.31402 -13.22931 -12.99271 -12.91144 -12.88988 -12.68726 -12.23661 -12.12273 -11.79998 -11.30951 -10.94028 -10.67186 -10.63555 -10.61707 -10.42907 -10.23580 -10.17405 -10.02991 -9.87797 -9.73997 -9.54374 -9.18562 -8.79174 -8.69790 -8.44383 -8.02815 -6.87498 -5.68868 -2.98093 0.65532 0.85812 2.29111 2.62381 3.00089 3.32498 3.49481 3.54606 3.56701 3.87127 3.95251 4.35142 4.60818 4.65662 4.65982 4.78426 4.84553 4.97577 5.11931 5.21049 5.29977 5.46654 5.60885 5.65385 5.71278 5.77080 5.79648 5.88846 5.90773 5.97961 6.05519 6.11024 6.15877 6.24016 6.32573 6.34528 6.44468 6.47808 6.59660 6.74387 6.75971 6.85431 6.95292 6.99559 7.01199 7.11964 7.68903 7.78459 7.99127 8.49227 8.53876 9.60099 10.17396 10.51034 11.53357 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.002895 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.549174 B = 9670.460700 C =10629.722098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.717 5.717 10 C 0.181 3.819 11 H 0.050 0.950 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.110 4.110 15 H 0.096 0.904 16 C 0.109 3.891 17 N -0.593 5.593 18 C 0.576 3.424 19 O -0.534 6.534 20 C 0.085 3.915 21 C -0.097 4.097 22 C -0.094 4.094 23 C 0.060 3.940 24 N -0.591 5.591 25 H 0.418 0.582 26 C 0.064 3.936 27 C -0.182 4.182 28 C 0.085 3.915 29 N -0.412 5.412 30 C 0.128 3.872 31 C -0.118 4.118 32 H 0.080 0.920 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.153 0.847 42 H 0.138 0.862 43 H 0.179 0.821 44 H 0.157 0.843 45 H 0.091 0.909 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 -24.918 13.981 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.070 3.930 11 H 0.068 0.932 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.130 4.130 15 H 0.114 0.886 16 C -0.014 4.014 17 N -0.324 5.324 18 C 0.362 3.638 19 O -0.411 6.411 20 C -0.063 4.063 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.050 4.050 24 N -0.195 5.195 25 H 0.256 0.744 26 C -0.064 4.064 27 C -0.208 4.208 28 C -0.050 4.050 29 N -0.123 5.123 30 C 0.007 3.993 31 C -0.140 4.140 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.219 0.781 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.171 0.829 42 H 0.156 0.844 43 H 0.196 0.804 44 H 0.175 0.825 45 H 0.109 0.891 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.193 -24.265 13.526 27.781 hybrid contribution -0.679 0.782 1.120 1.526 sum -0.486 -23.483 14.646 27.680 Atomic orbital electron populations 1.69656 1.05063 1.25666 1.57246 1.24736 0.95450 0.97632 1.02859 0.86231 0.78702 0.84131 0.77358 1.21849 1.21846 1.20793 1.19198 0.90929 0.84010 1.43056 0.91192 1.42556 1.05690 0.99699 1.87862 1.20810 0.94492 0.86237 0.91461 0.93165 1.22546 1.01002 0.95983 0.97266 1.22163 0.97891 0.98265 0.96448 1.23278 0.98342 0.97131 0.94209 0.88618 1.22585 0.94251 0.90106 0.94427 1.48421 1.33937 1.15408 1.34681 1.17384 0.80124 0.86343 0.79915 1.90826 1.49880 1.31593 1.68807 1.21073 0.95521 0.92438 0.97221 1.21777 0.97124 0.99007 0.93991 1.20427 1.00193 0.90153 1.01458 1.19279 1.00290 0.87509 0.97929 1.41605 1.34184 1.09537 1.34129 0.74438 1.21945 0.91518 0.97256 0.95663 1.21603 1.05042 0.90708 1.03450 1.20171 0.96417 0.93977 0.94482 1.67276 1.24019 0.97850 1.23168 1.21984 0.99337 0.87269 0.90702 1.23562 0.97907 0.93203 0.99334 0.90208 0.93489 0.78073 0.92107 0.91621 0.92443 0.91816 0.92283 0.88019 0.82900 0.84444 0.80401 0.82530 0.89116 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.66 9.95 -15.06 -0.15 -6.81 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.84 3.61 -52.09 -0.19 -18.03 16 10 C 0.18 3.57 3.24 -66.55 -0.22 3.35 16 11 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 12 C -0.13 -2.17 6.64 -25.24 -0.17 -2.34 16 13 C -0.11 -1.63 5.90 -25.39 -0.15 -1.78 16 14 C -0.11 -1.58 4.22 -87.12 -0.37 -1.95 16 15 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 16 C 0.11 1.62 5.26 -2.58 -0.01 1.61 16 17 N -0.59 -10.80 2.88 -171.75 -0.50 -11.30 16 18 C 0.58 10.95 7.84 -12.23 -0.10 10.86 16 19 O -0.53 -11.99 16.63 5.34 0.09 -11.90 16 20 C 0.09 1.32 6.72 -83.00 -0.56 0.76 16 21 C -0.10 -1.25 9.60 -39.05 -0.37 -1.63 16 22 C -0.09 -0.92 10.18 -39.24 -0.40 -1.32 16 23 C 0.06 0.59 7.29 -83.89 -0.61 -0.02 16 24 N -0.59 -3.56 6.05 -10.58 -0.06 -3.63 16 25 H 0.42 1.12 8.96 -40.82 -0.37 0.76 16 26 C 0.06 0.35 11.81 -16.77 -0.20 0.15 16 27 C -0.18 -1.53 11.08 -37.62 -0.42 -1.95 16 28 C 0.09 1.01 7.52 -83.10 -0.62 0.39 16 29 N -0.41 -5.84 6.60 -6.43 -0.04 -5.89 16 30 C 0.13 2.65 5.42 -3.18 -0.02 2.63 16 31 C -0.12 -2.11 3.92 -87.83 -0.34 -2.45 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.38 10.38 6.93 -40.82 -0.28 10.10 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.07 7.39 -51.93 -0.38 0.68 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.10 1.47 5.79 -51.93 -0.30 1.16 16 41 H 0.15 1.91 7.61 -52.49 -0.40 1.51 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.18 0.24 8.06 -52.48 -0.42 -0.18 16 44 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.09 2.17 6.16 -51.93 -0.32 1.85 16 46 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -35.12 369.59 -10.45 -45.57 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.22 Total: 10.50 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -4.80 Total: -0.88 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -0.07 Total: -66.73 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.12 -10.45 -45.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026311821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.402 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds