Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48502 * 109.46791 * 269.99892 * 3 2 1 5 5 H 1.48497 * 109.47301 * 29.99335 * 3 2 1 6 6 H 1.48496 * 109.47054 * 149.99854 * 3 2 1 7 7 C 1.38815 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99723 * 0.02562 * 7 2 1 9 9 N 1.36929 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00402 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.40722 * 32.52838 * 10 9 7 12 12 C 1.54839 * 110.45611 * 269.92813 * 10 9 7 13 13 C 1.54841 * 102.73093 * 203.05184 * 12 10 9 14 14 C 1.54147 * 104.34782 * 38.22809 * 13 12 10 15 15 H 1.09003 * 111.89936 * 98.85055 * 14 13 12 16 16 C 1.54461 * 108.79696 * 224.04300 * 14 13 12 17 17 N 1.48658 * 104.34829 * 138.54165 * 16 14 13 18 18 C 1.34776 * 128.35116 * 138.18685 * 17 16 14 19 19 O 1.21567 * 120.00005 * 180.09983 * 18 17 16 20 20 C 1.47761 * 120.00137 * 0.10137 * 18 17 16 21 21 N 1.32743 * 120.05933 * 359.72478 * 20 18 17 22 22 C 1.31721 * 122.13635 * 179.67436 * 21 20 18 23 23 C 1.38311 * 121.68612 * 0.62598 * 22 21 20 24 24 C 1.39022 * 119.08793 * 359.68541 * 23 22 21 25 25 N 1.37192 * 134.64225 * 180.02562 * 24 23 22 26 26 H 0.97002 * 125.06770 * 359.96113 * 25 24 23 27 27 C 1.36719 * 109.87519 * 179.97438 * 25 24 23 28 28 C 1.34575 * 109.95773 * 359.97438 * 27 25 24 29 29 C 1.40407 * 120.05752 * 180.02562 * 20 18 17 30 30 C 1.48338 * 103.45022 * 318.26548 * 17 16 14 31 31 C 1.54140 * 110.46159 * 154.99995 * 10 9 7 32 32 H 1.09001 * 111.89434 * 18.86235 * 31 10 9 33 33 H 0.96992 * 120.00436 * 0.02562 * 1 2 3 34 34 H 0.97006 * 119.99746 * 0.02562 * 9 7 2 35 35 H 1.08996 * 110.75567 * 321.36038 * 12 10 9 36 36 H 1.09000 * 110.76023 * 84.74592 * 12 10 9 37 37 H 1.09003 * 110.45531 * 156.94364 * 13 12 10 38 38 H 1.08995 * 110.45991 * 279.51435 * 13 12 10 39 39 H 1.09002 * 110.46248 * 257.24714 * 16 14 13 40 40 H 1.08998 * 110.46883 * 19.83537 * 16 14 13 41 41 H 1.07997 * 119.16167 * 180.29329 * 22 21 20 42 42 H 1.08002 * 120.45389 * 179.71513 * 23 22 21 43 43 H 1.07998 * 125.02865 * 180.02562 * 27 25 24 44 44 H 1.07994 * 126.50429 * 179.97438 * 28 27 25 45 45 H 1.09002 * 110.46861 * 282.97910 * 30 17 16 46 46 H 1.08997 * 110.46444 * 160.51876 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5565 -3.2306 -0.5486 12 6 4.3837 -2.9389 1.4518 13 6 5.6065 -3.8741 1.2854 14 6 6.4734 -3.1825 0.2147 15 1 7.2890 -2.6116 0.6586 16 6 6.9681 -4.2472 -0.7891 17 7 6.8337 -3.5923 -2.1168 18 6 7.6928 -3.6224 -3.1549 19 8 7.4288 -3.0245 -4.1799 20 6 8.9555 -4.3822 -3.0471 21 7 9.2476 -5.0310 -1.9265 22 6 10.3581 -5.7258 -1.7882 23 6 11.2941 -5.8091 -2.8031 24 6 11.0522 -5.1474 -4.0015 25 7 11.7347 -5.0146 -5.1842 26 1 12.5964 -5.4155 -5.3784 27 6 11.0197 -4.2328 -6.0483 28 6 9.8709 -3.8393 -5.4683 29 6 9.8516 -4.4139 -4.1276 30 6 5.5277 -2.8948 -2.0269 31 6 5.5153 -2.2829 -0.6087 32 1 5.8191 -1.2361 -0.6143 33 1 -0.4850 0.8399 -0.0004 34 1 3.8646 -0.3621 0.0014 35 1 4.6298 -2.0914 2.0914 36 1 3.5289 -3.4875 1.8473 37 1 6.1541 -3.9561 2.2243 38 1 5.2893 -4.8584 0.9411 39 1 8.0100 -4.5007 -0.5932 40 1 6.3423 -5.1382 -0.7389 41 1 10.5450 -6.2392 -0.8567 42 1 12.2001 -6.3808 -2.6665 43 1 11.3303 -3.9705 -7.0488 44 1 9.1087 -3.2151 -5.9108 45 1 4.7080 -3.6039 -2.1433 46 1 5.4618 -2.1105 -2.7810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026363275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = 70.121946 kcal Electronic energy + Delta-G solvation = -29166.085586 eV Core-core repulsion = 25249.932619 eV Total energy + Delta-G solvation = -3916.152967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94908 -40.14101 -38.65713 -37.90455 -35.15814 -33.31109 -32.57738 -31.13888 -31.04654 -29.94982 -29.04685 -28.44676 -25.41713 -24.85355 -23.26351 -22.89298 -22.39115 -21.30886 -20.36738 -19.69418 -19.10922 -18.34911 -17.57447 -17.26490 -16.37244 -15.97331 -15.64274 -15.41491 -15.32703 -14.94937 -14.77529 -14.24779 -13.99910 -13.81317 -13.49182 -13.30483 -13.18155 -13.02278 -12.61934 -12.48916 -12.43575 -12.13014 -11.91683 -11.68766 -11.28611 -10.83097 -10.76856 -10.62607 -10.36268 -10.29117 -10.27286 -10.24213 -10.07802 -9.87847 -9.53167 -9.35257 -9.21689 -8.84583 -8.58264 -8.21286 -7.19908 -5.72208 -3.07169 0.20895 1.13137 2.29501 2.56991 2.74624 2.97720 3.42603 3.45913 3.50241 3.77226 3.96791 4.21796 4.42648 4.60024 4.64157 4.66901 4.77711 4.89121 4.98824 5.02707 5.10626 5.20803 5.41040 5.50418 5.55822 5.61465 5.65167 5.66982 5.75635 5.80260 5.96408 5.97684 6.00554 6.10958 6.15835 6.20894 6.28365 6.30418 6.41075 6.44709 6.51323 6.58563 6.72409 6.81958 6.97769 7.00954 7.53868 7.70451 8.04636 8.23082 8.47340 9.25819 9.98683 10.18414 11.46227 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.002628 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.304537 B =10653.585983 C =11655.204982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.188 3.812 11 H 0.066 0.934 12 C -0.141 4.141 13 C -0.115 4.115 14 C -0.102 4.102 15 H 0.082 0.918 16 C 0.093 3.907 17 N -0.603 5.603 18 C 0.586 3.414 19 O -0.534 6.534 20 C 0.146 3.854 21 N -0.467 5.467 22 C 0.097 3.903 23 C -0.162 4.162 24 C 0.120 3.880 25 N -0.589 5.589 26 H 0.419 0.581 27 C 0.046 3.954 28 C -0.166 4.166 29 C -0.111 4.111 30 C 0.112 3.888 31 C -0.112 4.112 32 H 0.084 0.916 33 H 0.259 0.741 34 H 0.361 0.639 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.165 0.835 42 H 0.135 0.865 43 H 0.178 0.822 44 H 0.163 0.837 45 H 0.079 0.921 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.684 -14.690 -6.557 32.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.387 5.387 10 C 0.078 3.922 11 H 0.084 0.916 12 C -0.182 4.182 13 C -0.154 4.154 14 C -0.122 4.122 15 H 0.100 0.900 16 C -0.030 4.030 17 N -0.335 5.335 18 C 0.374 3.626 19 O -0.411 6.411 20 C 0.002 3.998 21 N -0.180 5.180 22 C -0.057 4.057 23 C -0.185 4.185 24 C 0.005 3.995 25 N -0.193 5.193 26 H 0.256 0.744 27 C -0.079 4.079 28 C -0.191 4.191 29 C -0.120 4.120 30 C -0.009 4.009 31 C -0.132 4.132 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.194 0.806 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.182 0.818 42 H 0.153 0.847 43 H 0.195 0.805 44 H 0.181 0.819 45 H 0.097 0.903 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 27.873 -14.440 -6.590 32.076 hybrid contribution 1.602 0.991 -0.681 2.003 sum 29.475 -13.449 -7.270 33.204 Atomic orbital electron populations 1.69698 1.05105 1.25763 1.57705 1.24665 0.95212 0.97171 1.02123 0.86569 0.79204 0.85074 0.77814 1.21073 1.21864 1.20318 1.19080 0.80602 0.94668 1.42749 0.89185 1.42822 1.04035 1.01933 1.89898 1.21136 0.88832 0.89223 0.93022 0.91613 1.23173 0.96337 0.98465 1.00223 1.22399 0.96682 0.98709 0.97599 1.22737 0.97743 0.96137 0.95553 0.89956 1.23307 1.05053 0.94532 0.80083 1.49065 1.19935 1.50004 1.14453 1.17289 0.82013 0.80806 0.82534 1.90774 1.75925 1.45375 1.28987 1.20659 0.94157 0.96113 0.88881 1.67681 1.19604 1.08190 1.22545 1.22458 0.88820 0.96024 0.98351 1.21178 1.02433 1.03157 0.91758 1.18273 0.93058 0.99546 0.88663 1.41659 1.20654 1.45639 1.11393 0.74359 1.22121 0.93206 0.96387 0.96223 1.21988 0.99024 1.05383 0.92735 1.19826 0.94611 1.01390 0.96144 1.22679 0.83749 0.96702 0.97805 1.23107 0.97142 0.99301 0.93682 0.89757 0.93123 0.80603 0.91790 0.91837 0.92207 0.91576 0.86300 0.91149 0.81782 0.84724 0.80470 0.81910 0.90289 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.58 13.97 55.49 0.78 -28.80 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.45 27.74 -169.99 -4.71 17.73 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 7 C -0.24 -6.77 10.44 -15.06 -0.16 -6.92 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.50 5.01 -51.91 -0.26 -17.76 16 10 C 0.19 3.53 3.06 -66.37 -0.20 3.33 16 11 H 0.07 1.28 7.12 -51.93 -0.37 0.91 16 12 C -0.14 -2.35 6.57 -24.79 -0.16 -2.51 16 13 C -0.12 -1.47 6.36 -25.16 -0.16 -1.63 16 14 C -0.10 -1.34 3.95 -88.15 -0.35 -1.69 16 15 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 16 C 0.09 1.17 6.13 -2.08 -0.01 1.15 16 17 N -0.60 -9.12 3.32 -169.77 -0.56 -9.69 16 18 C 0.59 9.45 7.91 -12.37 -0.10 9.36 16 19 O -0.53 -9.87 15.43 5.31 0.08 -9.79 16 20 C 0.15 2.00 6.77 -82.76 -0.56 1.44 16 21 N -0.47 -5.39 6.66 -9.66 -0.06 -5.46 16 22 C 0.10 0.80 11.13 -17.57 -0.20 0.61 16 23 C -0.16 -1.19 10.14 -39.26 -0.40 -1.58 16 24 C 0.12 1.10 7.34 -84.03 -0.62 0.48 16 25 N -0.59 -3.69 6.05 -10.59 -0.06 -3.75 16 26 H 0.42 1.10 8.96 -40.82 -0.37 0.73 16 27 C 0.05 0.32 11.82 -16.67 -0.20 0.12 16 28 C -0.17 -1.81 10.26 -37.82 -0.39 -2.20 16 29 C -0.11 -1.37 6.15 -104.88 -0.65 -2.02 16 30 C 0.11 1.82 6.57 -2.26 -0.01 1.80 16 31 C -0.11 -1.80 3.65 -88.15 -0.32 -2.12 16 32 H 0.08 1.43 7.79 -51.93 -0.40 1.03 16 33 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 34 H 0.36 8.44 5.46 -40.82 -0.22 8.22 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.78 7.18 -51.93 -0.37 0.41 16 39 H 0.12 1.41 5.12 -51.93 -0.27 1.14 16 40 H 0.07 0.85 7.20 -51.93 -0.37 0.47 16 41 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 43 H 0.18 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.16 1.93 7.23 -52.49 -0.38 1.55 16 45 H 0.08 1.26 7.20 -51.93 -0.37 0.89 16 46 H 0.08 1.44 7.88 -51.93 -0.41 1.03 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -35.63 366.90 -9.95 -45.57 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.09 Total: 8.80 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -4.58 Total: -2.38 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.18 Total: -65.46 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.73 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.63 -9.95 -45.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026363275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.696 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds