Wall clock time and date at job start Sat Apr 11 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48502 * 109.46791 * 269.99892 * 3 2 1 5 5 H 1.48497 * 109.47301 * 29.99335 * 3 2 1 6 6 H 1.48496 * 109.47054 * 149.99854 * 3 2 1 7 7 C 1.38815 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99723 * 0.02562 * 7 2 1 9 9 N 1.36929 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00402 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.40722 * 32.52838 * 10 9 7 12 12 C 1.54839 * 110.45611 * 269.92813 * 10 9 7 13 13 C 1.54841 * 102.73093 * 203.05184 * 12 10 9 14 14 C 1.54147 * 104.34782 * 38.22809 * 13 12 10 15 15 H 1.09003 * 111.89936 * 98.85055 * 14 13 12 16 16 C 1.54461 * 108.79696 * 224.04300 * 14 13 12 17 17 N 1.48658 * 104.34829 * 138.54165 * 16 14 13 18 18 C 1.34776 * 128.35116 * 138.18685 * 17 16 14 19 19 O 1.21567 * 120.00005 * 180.09983 * 18 17 16 20 20 C 1.47761 * 120.00137 * 0.10137 * 18 17 16 21 21 N 1.32743 * 120.05933 * 359.72478 * 20 18 17 22 22 C 1.31721 * 122.13635 * 179.67436 * 21 20 18 23 23 C 1.38311 * 121.68612 * 0.62598 * 22 21 20 24 24 C 1.39022 * 119.08793 * 359.68541 * 23 22 21 25 25 N 1.37192 * 134.64225 * 180.02562 * 24 23 22 26 26 H 0.97002 * 125.06770 * 359.96113 * 25 24 23 27 27 C 1.36719 * 109.87519 * 179.97438 * 25 24 23 28 28 C 1.34575 * 109.95773 * 359.97438 * 27 25 24 29 29 C 1.40407 * 120.05752 * 180.02562 * 20 18 17 30 30 C 1.48338 * 103.45022 * 318.26548 * 17 16 14 31 31 C 1.54140 * 110.46159 * 154.99995 * 10 9 7 32 32 H 1.09001 * 111.89434 * 18.86235 * 31 10 9 33 33 H 0.96992 * 120.00436 * 0.02562 * 1 2 3 34 34 H 0.97006 * 119.99746 * 0.02562 * 9 7 2 35 35 H 1.08996 * 110.75567 * 321.36038 * 12 10 9 36 36 H 1.09000 * 110.76023 * 84.74592 * 12 10 9 37 37 H 1.09003 * 110.45531 * 156.94364 * 13 12 10 38 38 H 1.08995 * 110.45991 * 279.51435 * 13 12 10 39 39 H 1.09002 * 110.46248 * 257.24714 * 16 14 13 40 40 H 1.08998 * 110.46883 * 19.83537 * 16 14 13 41 41 H 1.07997 * 119.16167 * 180.29329 * 22 21 20 42 42 H 1.08002 * 120.45389 * 179.71513 * 23 22 21 43 43 H 1.07998 * 125.02865 * 180.02562 * 27 25 24 44 44 H 1.07994 * 126.50429 * 179.97438 * 28 27 25 45 45 H 1.09002 * 110.46861 * 282.97910 * 30 17 16 46 46 H 1.08997 * 110.46444 * 160.51876 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5565 -3.2306 -0.5486 12 6 4.3837 -2.9389 1.4518 13 6 5.6065 -3.8741 1.2854 14 6 6.4734 -3.1825 0.2147 15 1 7.2890 -2.6116 0.6586 16 6 6.9681 -4.2472 -0.7891 17 7 6.8337 -3.5923 -2.1168 18 6 7.6928 -3.6224 -3.1549 19 8 7.4288 -3.0245 -4.1799 20 6 8.9555 -4.3822 -3.0471 21 7 9.2476 -5.0310 -1.9265 22 6 10.3581 -5.7258 -1.7882 23 6 11.2941 -5.8091 -2.8031 24 6 11.0522 -5.1474 -4.0015 25 7 11.7347 -5.0146 -5.1842 26 1 12.5964 -5.4155 -5.3784 27 6 11.0197 -4.2328 -6.0483 28 6 9.8709 -3.8393 -5.4683 29 6 9.8516 -4.4139 -4.1276 30 6 5.5277 -2.8948 -2.0269 31 6 5.5153 -2.2829 -0.6087 32 1 5.8191 -1.2361 -0.6143 33 1 -0.4850 0.8399 -0.0004 34 1 3.8646 -0.3621 0.0014 35 1 4.6298 -2.0914 2.0914 36 1 3.5289 -3.4875 1.8473 37 1 6.1541 -3.9561 2.2243 38 1 5.2893 -4.8584 0.9411 39 1 8.0100 -4.5007 -0.5932 40 1 6.3423 -5.1382 -0.7389 41 1 10.5450 -6.2392 -0.8567 42 1 12.2001 -6.3808 -2.6665 43 1 11.3303 -3.9705 -7.0488 44 1 9.1087 -3.2151 -5.9108 45 1 4.7080 -3.6039 -2.1433 46 1 5.4618 -2.1105 -2.7810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026363275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:43 Heat of formation + Delta-G solvation = 45.572569 kcal Electronic energy + Delta-G solvation = -29167.150127 eV Core-core repulsion = 25249.932619 eV Total energy + Delta-G solvation = -3917.217507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.63246 -41.31946 -39.73333 -38.80915 -36.73725 -34.98910 -33.30199 -33.07228 -31.77217 -30.97729 -30.19271 -29.65093 -26.78531 -26.00385 -24.41893 -24.10376 -23.53123 -22.10500 -21.60088 -20.78937 -20.51142 -19.42438 -19.00675 -18.43444 -17.35878 -17.05162 -16.74929 -16.69072 -16.14029 -16.07404 -15.71936 -15.55571 -15.25970 -15.09992 -14.70485 -14.66024 -14.20084 -13.97651 -13.90296 -13.87009 -13.59515 -13.46503 -13.08210 -12.94697 -12.75139 -12.61107 -12.21359 -12.09296 -11.91894 -11.80252 -11.55891 -11.46167 -11.42917 -11.20964 -10.97139 -10.92081 -10.25392 -9.89866 -9.76560 -9.25722 -8.87988 -8.00848 -5.32791 -0.56032 0.45924 1.37150 1.40372 1.46879 1.55804 1.80405 1.83781 2.07986 2.48994 2.94003 3.09248 3.29910 3.45212 3.54338 3.65908 3.69943 3.84007 3.94354 4.04279 4.13684 4.26143 4.36515 4.42425 4.47482 4.51239 4.56563 4.58934 4.65734 4.65865 4.76713 4.88512 4.90594 5.00620 5.03805 5.09662 5.13814 5.26573 5.29714 5.43120 5.48199 5.52212 5.58735 5.64032 5.80271 5.87786 6.24176 6.52190 6.57641 6.78838 7.09707 7.11913 7.87312 8.05224 9.20894 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.002628 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.304537 B =10653.585983 C =11655.204982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.951 3.049 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.222 4.222 8 H 0.059 0.941 9 N -0.750 5.750 10 C 0.178 3.822 11 H 0.053 0.947 12 C -0.137 4.137 13 C -0.100 4.100 14 C -0.091 4.091 15 H 0.098 0.902 16 C 0.098 3.902 17 N -0.605 5.605 18 C 0.577 3.423 19 O -0.576 6.576 20 C 0.104 3.896 21 N -0.473 5.473 22 C 0.084 3.916 23 C -0.135 4.135 24 C 0.108 3.892 25 N -0.572 5.572 26 H 0.441 0.559 27 C 0.089 3.911 28 C -0.227 4.227 29 C -0.135 4.135 30 C 0.113 3.887 31 C -0.105 4.105 32 H 0.076 0.924 33 H 0.256 0.744 34 H 0.363 0.637 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.203 0.797 42 H 0.179 0.821 43 H 0.221 0.779 44 H 0.137 0.863 45 H 0.075 0.925 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.980 -16.640 -5.755 38.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.779 3.221 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.177 1.177 7 C -0.354 4.354 8 H 0.077 0.923 9 N -0.392 5.392 10 C 0.070 3.930 11 H 0.071 0.929 12 C -0.177 4.177 13 C -0.138 4.138 14 C -0.111 4.111 15 H 0.116 0.884 16 C -0.023 4.023 17 N -0.336 5.336 18 C 0.367 3.633 19 O -0.456 6.456 20 C -0.039 4.039 21 N -0.186 5.186 22 C -0.070 4.070 23 C -0.157 4.157 24 C -0.007 4.007 25 N -0.177 5.177 26 H 0.283 0.717 27 C -0.038 4.038 28 C -0.252 4.252 29 C -0.144 4.144 30 C -0.010 4.010 31 C -0.125 4.125 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.196 0.804 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.152 0.848 40 H 0.097 0.903 41 H 0.220 0.780 42 H 0.197 0.803 43 H 0.237 0.763 44 H 0.154 0.846 45 H 0.093 0.907 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 33.253 -16.452 -5.760 37.545 hybrid contribution 0.064 1.430 -1.025 1.760 sum 33.317 -15.022 -6.785 37.171 Atomic orbital electron populations 1.69873 1.07016 1.26479 1.60216 1.25446 0.96062 1.01013 1.03138 0.85464 0.78740 0.80113 0.77809 1.21071 1.22238 1.17661 1.19041 0.82598 0.93365 1.40356 0.92321 1.42850 1.02494 1.03858 1.90027 1.21389 0.89652 0.86999 0.94958 0.92891 1.23023 0.97975 0.99049 0.97701 1.22340 0.94657 0.98053 0.98777 1.22740 0.97354 0.95660 0.95317 0.88421 1.23434 1.06197 0.94264 0.78380 1.49142 1.19146 1.49968 1.15379 1.17912 0.82966 0.80501 0.81956 1.90729 1.77073 1.47247 1.30505 1.20228 0.93894 0.98945 0.90839 1.67504 1.21185 1.08194 1.21723 1.23150 0.87977 0.95704 1.00186 1.21676 1.03092 1.00924 0.90030 1.18509 0.92330 0.99657 0.90228 1.41671 1.21112 1.44763 1.10185 0.71742 1.22637 0.91020 0.93082 0.97026 1.21937 1.01105 1.08477 0.93722 1.20132 0.95834 1.02128 0.96285 1.22522 0.84860 0.96184 0.97393 1.22957 0.96109 0.99582 0.93848 0.90586 0.93477 0.80355 0.92416 0.92913 0.89317 0.90231 0.84790 0.90281 0.78032 0.80331 0.76255 0.84559 0.90670 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.69 13.97 21.65 0.30 -64.38 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.95 47.35 27.74 68.60 1.90 49.26 16 4 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 5 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 6 H -0.25 -11.36 6.52 99.48 0.65 -10.71 16 7 C -0.22 -12.92 10.44 84.04 0.88 -12.05 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.75 -35.83 5.01 -318.16 -1.59 -37.42 16 10 C 0.18 6.79 3.06 46.01 0.14 6.93 16 11 H 0.05 2.15 7.12 -2.39 -0.02 2.13 16 12 C -0.14 -4.44 6.57 31.85 0.21 -4.23 16 13 C -0.10 -2.27 6.36 31.61 0.20 -2.07 16 14 C -0.09 -2.22 3.95 -9.19 -0.04 -2.25 16 15 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 16 C 0.10 2.33 6.13 86.46 0.53 2.87 16 17 N -0.61 -18.83 3.32 -809.30 -2.69 -21.52 16 18 C 0.58 19.72 7.91 86.76 0.69 20.40 16 19 O -0.58 -23.33 15.43 -3.93 -0.06 -23.39 16 20 C 0.10 2.87 6.77 42.05 0.28 3.15 16 21 N -0.47 -10.07 6.66 -184.49 -1.23 -11.30 16 22 C 0.08 1.07 11.13 84.73 0.94 2.02 16 23 C -0.13 -1.37 10.14 22.48 0.23 -1.14 16 24 C 0.11 1.67 7.34 39.24 0.29 1.96 16 25 N -0.57 -5.02 6.05 -187.42 -1.13 -6.16 16 26 H 0.44 0.12 8.96 -92.71 -0.83 -0.71 16 27 C 0.09 1.03 11.82 83.09 0.98 2.01 16 28 C -0.23 -5.12 10.26 23.41 0.24 -4.88 16 29 C -0.14 -3.32 6.15 -20.03 -0.12 -3.44 16 30 C 0.11 3.85 6.57 86.52 0.57 4.42 16 31 C -0.10 -3.37 3.65 -9.19 -0.03 -3.40 16 32 H 0.08 2.59 7.79 -2.39 -0.02 2.58 16 33 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 34 H 0.36 16.93 5.46 -92.70 -0.51 16.42 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.64 7.18 -2.39 -0.02 1.62 16 39 H 0.13 2.85 5.12 -2.39 -0.01 2.84 16 40 H 0.08 1.75 7.20 -2.39 -0.02 1.73 16 41 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 42 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 43 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 44 H 0.14 3.68 7.23 -2.91 -0.02 3.66 16 45 H 0.08 2.57 7.20 -2.39 -0.02 2.55 16 46 H 0.06 2.18 7.88 -2.39 -0.02 2.17 16 Total: -1.00 -84.88 366.90 1.60 -83.29 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.36 Total: 24.83 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.45 Total: 6.80 kcal Atomic # 7 Polarization: -134.44 SS G_CDS: -6.34 Total: -140.79 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.90 Total: 49.26 kcal Total: -84.88 1.60 -83.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026363275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.858 kcal (2) G-P(sol) polarization free energy of solvation -84.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds